>input_sequence_80862
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--------------------------------------------------------------ATGGCCGAGGCGGCGCAG
GGCGGGGGGCTACGCGGCCGCGGCGTGCTGCTGGGCGGCGTCCAGGACGCGCCGGCGGGGCGGGAGAACGACCTCGCGAC
CATCAAGCTCGCACGCTTCGCCGTCGCCGAGCACAACACCAAGGCCGTAAGATCATCCCCACCCGA-----T--CAAGCC
ATCTGGCGTCTGATACGCGTAACTGTAACTGACTGATTAACCTGA--------TGG------------------------
----------------------------------------------------------TGAATTTTGTTGTGCGCAGAAC
GCGCTGCTGGAGTTCGAGAGGCTGGTGAAGGTGAGGCAGCAGGTGGTGGCCGGGTGCATGCACTACTTCACCATCGAGGT
CAAGGAAGGCGGCGCCAAGAAGCTCTACGAGGCCAAGGTGTGGGAGAAGGCCTGGGAGAACTTCAAGCAGCTCCAGGAGT
TCAAGCCGGCCGCCTGA---------------------------------------------------------------
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>chr1B_1_TraesCS1B01G322100
GCGGGATGGTGGAAATGGCCTTCTGTTCGACCGCCTACAGTTAAAACAGGATCATGTTCACTGGGAGGGGTCTGGCGTAC
CGCAAAATGAAGGAAACACCCCGTTTCTCCTGTTGATCGGGAGGGGTGTGGCGTACCACAAAATGGAGGAAACGGACTTC
TCTTCGACCTCCTACGGTCGAAACAGGGATCATGTTCATCGGGAGGGGTGTGGCTCACCGTAAAACGGGACTTCACGGGC
TGCGCGGCGAGATGGCGACTCTACCATCGGAGAAACCGAATGGGCGGTGAGGCGAGAGGGGAGACAGTGCGTGCGAATTG
TCGAGTGTGGTGATTGCAAGGAGCAAGGAGAGTTAGAGACGTCATGTCGTCTCCCGCGCTTCCCACGCATGGCTCGAGCG
AGACAGACTCTTAAAAATTTGCCGATTCGGCCGTTCGTCCAGAGCTCTCAGCCAGCTCTGAGATTCATGCGGGCCAGATT
TTAGATGCAGCCCAGGCAACCAAATGGCCCAGGCCGAATTCTGCACGCCCGAGCCTGGCTGGGCCTAATACAGCCTACCA
AACGCATACATATTGTTTTCCAGGGATAGATAAACAACCGTTTCACCGGGTCTGCTGCTCTTTACTTCGCCAGCACTTGC
CTTCGGAGCTAAGCATTGCAAGTTTGCAACGCATCCATCGCCGTCGCCGTCGCCATCGCACAGC--CAGCGCTGCAGCGT
ACCGCGTCCGTCGCGTCGACACACAGCCCCACCGCTGCCGCGTACAGCGTCCGGCCCGTCCGTCGCCTATAGCTGTCGCG
CTCGAGCCCCCGCAGATCACACGTCG---------------CGCACAAAAACGGAATCCCTCTAC-CCCCACGTCGCTAT
AAAGTCCCGTCCCCAACTTCCCTCGATCAACATCGTTA-GACTCACGGAATAGATCTGTTCTCTCTCAGACTCTCAGCAG
CGGTTATCCGTCGTACGCTCCTCTCTCGGCTCAGCGCGCCCTCCGGACGCACGGCGGCG---ATGGCCGAGGCGGCGCAG
GGCGGGGGGCTACGCGGCCGCGGCGTGCTGCTGGGCGGCGTCCAGGACGCGCCGGCGGGGCGGGAGAACGACCTCGCGAC
CATCAAGCTCGCACGCTTCGCCGTCGCCGAGCACAACACCAAGGCCGTAAGATCATCCCCACCCGA-----T--CAAGCC
ATCTGGCGTCTGATACGCGTAACTGTAACTGACTGATTAACCTGA--------TGG------------------------
----------------------------------------------------------TGAATTTTGTTGTGCGCAGAAC
GCGCTGCTGGAGTTCGAGAGGCTGGTGAAGGTGAGGCAGCAGGTGGTGGCCGGGTGCATGCACTACTTCACCATCGAGGT
CAAGGAAGGCGGCGCCAAGAAGCTCTACGAGGCCAAGGTGTGGGAGAAGGCCTGGGAGAACTTCAAGCAGCTCCAGGAGT
TCAAGCCGGCCGCCTGAAAAGATGTAAATAAATATGTTATGTGAGCTGAACCGCTGAAGCTTGTAGCTGGAGCCTATCAA
AAAACATGCCAGCCTCACTGGATACTGGTGTAATATGATGAAATAAACCTGCTTCCTGCCTGATGTGTATGATTGATTCC
CACAAGTATTTTGCTTGTTTGCACTTCACCTCCCACATAACTCGAAAGCTTGATGTCTTAATA-----------------
--------------------------ACAAGATTGTTAATCACTAAAGCAAGTGAAAAATCCCACCTGGAAGAGAGAAAT
TCAGAAATAACACAAGATTGTT-A--------------------------------------------------------
-------ATCACTAAAGCAAGTAAAAAATTCCACCTGGAAGAGGAAA-AATCACAAATAACACAAGATTA----------
--------GAAAAATCCCACTTGGAAGAGAAAATTCACAAATAACACAAGATTATTAATAACTAAATCAAGAGAAAAAAT
CCACCTGGAAGAGT---GGAACCTCGTAAGAGCTAACATAAGCATTATGACATAGCATTTGATCTAAAAGCAACCATGAT
TTACAACCGGAGAACCTGTCTAGTTATATAGTTGCTACACTATATAGTTGCTACACAAAATACTAGCTACTACTGGCTAT
TGAGCAATCAACATATGTCACATCCTAAATTACTTCTGCAGCATCTGCCAGTACACATACTACAAGAGAATTGCTACTAC
ATTGTCAAGCTTGGCCTGCTAGGATGTACATCATGTCATGTCTACCTATCAGCTTCTCAAACTA-----------GAGTC
ACATCATTCTTCATTGTCATAGTCTTCGTCCTCCTCTAATCTATGGTTTGACGACAACGCAAACTGGACCGGGTCCATGG
CCATCTTGTTCATCTCAGGCATTTGCCAGCCCAGGAAATCCTTGGTCTCCACTTCTTCTTTCAACTGTGAAACCGATGGT
CCTGAAGTCTGGACTTGCGGTGCCACGGTCACCACAGGAGCT---------GAAGGCTGGACTTGCGGCGCCACTGTATC
CTCCTCGTAGTCAGCAAGATCTAAGTTCAAGTCAATGTTCCTTAAG
>chr1A_570
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---------ATATTGTTTTTCAGGGATAGATATACGACCGTTTCACCAGGTCTGCTGCTCTTTACTTCGCCAGCACTTGC
CTTCGGAGCTAAGCA--------TTGCAACGCATCCATCGCCATCGCCGTCGCCATCGCACAG-----------------
----------------------------CCAGCGCTGCTGCGTAGAGCGTCCGGCCCGTCCGTCGCCTATAGCTGTCGCG
CTCGAGCCCCCGCAGATCACACGTCG---------------CGCACAAAAACGGAATCCCTCTAT-CCCCACGTCGCTAT
AAAGTCCCGTCCCCCACTTCCCTCGATCAACATCGTCTCGGCTCACGGAACAGATCTGTTCTCTCTCAGACTCTCAGCAG
CGGCCATCCGTCGTACACTCCTCTCTCGTCTCAGCGCACCCTCCGGACGCA---CGGCG---ATGGCCGAGGCGGCGCAG
GGCGGGGGGCTGCGCGGCCGCGGCGTGCTGCTGGGCGGCGTCCAGGACGCGCCGGCGGGGCGGGAGAACGACCTCGCAAC
CATCGAGCTCGCCCGCTTCGCCGTCGCCGAGCACAACACCAAGGCCGTAAGATCATCCCCACCCGACCCGATCCCAAGCC
AATTGGCGTCCGATACGATTAACTGTAACTGA----TTAACCTGCTGGATCGGTGG------------------------
----------------------------------------------------------TGAATTTTGCTGGGCGCAGAAC
GCGCTGCTGGAGTTCGAGAGGCTGGTGAAGGTGAGGCAGCAGGTGGTGGCCGGGTGCATGCACTACTTCACCATCGAGGT
CAAGGAGGGCGGCGCCAAGAAGCTCTACGAGGCCAAGGTGTGGGAGAAGGCCTGGGAGAACTTCAAGCAGCTCCAGGACT
TCAAGCCGGCCGCCTGAAAAGATGTAAATAAATATGTTATGTGAGCTCAACTGCTGAAGCTTGTGGCTGGGGCCTATCC-
--AACATGTCAGCCTCACTGGATACTGGTGTAATATGATGAAATAAACCTGCTTCCTGCCTGATGTGTA----TGATTCC
CACAAGTATTTTGCTTGTTTGTACTTCACCTCCCACATATCTCCAAAGCTTGATGTCTTGCATCACAAATAACACAAGAT
TGTCCGTTTCAAAAAATAATAATAACACAAGATTGTTAATCACTAAAGCAAGAGAAAAATCCCACCTGGAAGAGCAAACT
TCACAAATAACA--AGATTGTTAA--------------------------------------------------------
-------ATCCCTAATGCAAGATAAAAATCCCACCTGGAAGAGAAAA-ATTCACAAATAACACA----------------
-----------------------------------------------------------------------AGAAAAAAT
CCACCTGGAAGAGT---GGAACCTCATAAGAGCTAACATAAGCATTATGACATAGCATTTGATCTAAAAGCAACCATGAT
TTACAACCGGCGAACATGTCTAGTTATATAGTCGCTACACTATATAGTTGCTACACAAGATACTAGCTACTACTGGCTAT
TGAGCAATCAACATATGTCACATCCTAAATTACTTCTGCAGCATCTGCGGGTACACATACTACAAGAGAATTGCTACTAC
ATTGTCAAGCTGGGCCTGCTAGGATGTACATCATGTCATGTCTACCTATCAGCTTCTCAAACTAAATCCACGCTAGAGTC
ACATCATTCTTCATTGTCATAGTCTTCGTCCTCCTCTAATCTATGGTTTGACGACAGCGCAAACTGCACCGGGTCCATGG
CCATCTTGTTCATCTCAGGCATTTGCCAGCCCAGGAAATCCTTGGTCGCCACTTCTTCTTTCAACTGTGAAACCGATGGT
CCTGAAGTCTGGACTTGCGGCGCCACGGTCACCACAGGAGCT---------GAAGGCTGGACTTGCGGCGCCACTGTATC
CTCCTCGTAGTCAGCAAGATCTAAGTTCAAGTCAATGTTCCTTAAG
>chr1D_615
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------------------------------------------------------CTGCTCTTTGCTTCGCCCGCACTTGC
CTTCGGAGCTAAGTATTACAACAACGCCAT----------CCGTCGCCGTCGCCGTCGCACAGCACCAGCGCTGCTGCGT
ACCGCGTCCGTCGCGTCGACGCACAGCGCCAGCGCGGCCGCGTACCGCGTCCGGTCCGTCCGTCGCCCATAGCTGTCGC-
-----GCCCCCGCAAATCACACGTCGTTTGACAGGGAACATCGCACAAAAACGGAATCCCTCTACCCCCCACCTCGCTAT
AAAGTCTCGTCCCCCACTTCCCTCGATCAACATCGTCTGGACTCACGGAACAGATCTGTTCTCTCTCAGACTCTCTGCAG
CGGCCATCCGTCGTACAATC----------------CACCCTCCGGACGCA---CGGCAGCCATGGCCGAGGCGGCGCAG
GGCGGGGGGCTACGCGGCCGCGGCGCTCTGCTGGGCGGCGTCCAGGACGCGCCGGCGGGGCGGGAGAACGACCTCGAGAC
CATCGAGCTCGCGCGCTTCGCCGTCGCCGAGCACAACACCAAGGCCGTAAGATCATCCCCGCCCGA-----TCCCAAGTC
ATCTGGCGTCTCATACGATTAACTGTAACTGACTGATTAACCTGA--------TGGATCGGTGGTGAATTTTCTTGATTA
ACCTGCCTGACGGATCGGTGGTGAATTTTCTTGATTAACCTGCCTGACGGATCGGTGGTGAATTTTGTTGGGCGCAGAAC
GCGCTGCTGGAGTTCGAGAGGCTGGTGAAGGTGAGGCAGCAGGTGGTGGCCGGGTGCATGCACTACTTCACCATCGAGGT
CAAGGAAGGCGGCGCCAAGAAGCTCTACGAGGCCAAGGTGTGGGAGAAGGCCTGGGAGAACTTCAAGCAGCTCCAGGACT
TCAAGCCGGCCGCCTGAAAAGATGTAAATAAATATGTTATGTGAGCTGAACCGCTCAAGCTTGTGGATGGGGCCTATCC-
--AACACGCCAGCCTCACTGGATACTGGTGTAATATGATGAAATAAACCTGCTTCCTGCC--ATGTCTA----TGATTCC
CACAAGTATTTTGCTTGTTTGCACTAAACCTCCCACATATCTCCAAAGCTTGATGTCTTGCATCACA-------------
--------------------AATAACACAAGATTGTTAATCACTAAAGCAAGAGAAAAATCCCACCTGGAAGAGAAAAAT
TCACACATAACACAAGATTGTTAATCACTTAGCAAGAGAAAAATATCACCTGTAAGAGAAATATTCACAAATAACACAAG
ATTGTTGATCACTAAAGCAAGTGAAAAATCCCACCAGGAAGAGAAAATAATCACAAATAACACAAGATTGTTGATCACCA
AAGCAAGTGAAAAATTCCACCTGGAAGAGAAAAATCACAAATAACACGAGATTGTTAATAACTAAAGCAAGAGAGAAAAT
CCACCTGGAAGAGTGGAGGAACCTCATAAGAGCTAACATAAGCATTATGACATAGCATTTGATCTAAAAGCAACCATGAT
TTACAACCGGCGAACCTGTCTAGTTATATAGTTGCTACACTATATAGTTGCTACACAAAATACTAGCTACTACTGGCTAT
TGAGCAATCAACATATGTCACATCCTAAATCACTTCTGCAGCATCTGCGGGTACACATACTACAAGAGAATTGCTACTAC
ATTGTCAAGCTGGGCCTGCTAGGATGTACATCATGTCATGTCTACCTATCAGCTTCTCAAACTAAATCCACGCTAGAGTC
ACGTCATTCTTCATTGTCATAGTCTTCGTCCTCCTCTAATCTATGGTTTGACGACAGCGCAAACTGCACCGGGTCCATGG
CCATCTTGTTCATCTCAGGCATTTGCCAGCCCAGGAAATCCTTGGTCTCCACTTCTTCTTTCAACTGTGAAACCGACGGT
CCTGAAGTCTGGACTTGCGGTGCCACGGTCACCACAGGAGCTGAAGGAGCCGAAGGCTGGACTTGCGGCG------TATC
CTCCTCGTAGTCAGCAAGATCTAAGTTCAAGTCAATGTTCCTTAAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------S------------S--S-----------S--------------------------------
-----------------S---SS----------------------------------------------------S----
--------------------S------S---S------------------------------------------------
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--------------S---------------------SS------------S-----------------------------
---SS-----------S-----------S--------S-------------SSS--------------------------
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----S-------S-------------------------------------------------------------------
-----------------SS-------------------------------------------------------------
----------------------------------------------------------------------S---------
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------------------------------------------------------------------------------S-
----------------------------------------------------------------S-----S-------SS
SS-------------------------------------------------------------------SSSS-------
---------------------------------------S---S---------------SSSS-----------------
----------------------------------------------------S----------------------S----
---S----------------------------------------------------------------------------
----------------------S------S-------------S-------------------------S----------
---------------S----S------------S-------------S-----S------------S-------------
-------------------------S------------------------------------------------------
----------S---------------------------------------------------------------------
------------------------------------------------SS------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------S---------S-------------
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>forward_72
----------------------------------------------------CATGTTCACTGGGAGGGGTC--------
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>reverse_1601
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AAAACATGCCAGCCTCACTG------------------------------------------------------------
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