>input_sequence_80848
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------------------------------------------------------ATGTCTGGCAGGAGGTCGCGCGGCTC
CGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAGGCTCCAGACCCTGCTCCCCACCGCGCGCCGCCGCGGCAGCAGCA
GCAGCCAGGTACGACGACCGACACGACTAGTTTCATCAGTTTGCAGCTAGCACATGCGCTTGCATGTCAGCATGTGTGCA
GCCAAGCCACGG--------------------------------------TGC-AAGCTTAGTGTGTTTATGGGAGGTTT
ATGGAAGCTTGGTAATGAATCGGTG----GATGAATGCATGCAGGCGTCGACGACGAAAATGCTCAAGGAGACGTGCAGC
TACATCAAGAGCCTGCACAGGGAAGTGGACGACCTCAGCGACCGCCTCTCCGACCTCATGTCCACCATGGACAACAACAG
CCCCGCCGCCGAGATCATCCGCAGCCTCCTCCGCTAG-------------------------------------------
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>chr7D_1_TraesCS7D01G187000
TCCTGTCATTAAGCATCCACTGTTAACTGTTAAGCATGTGGTTATACTATGCGAGATCCACTGTTTTTTTTTTGTCGAAT
CTTAAGCATCCAAAGCGTACTCCTCCTACCACAC-------AGGACAAGCTAGCAATGAGATCGGTCCGCCGCTGCGTGC
AGGACCCGACCGGCCGCTAGGTCGAGGCGAGTTGTTT-GCTCCGGCACCGGGACATCGGGGGACAATGGCATCTTCCGGG
TCTGCTACTCGGGTCGCTCCGCGATGGGGACGTGCCCTGCCCTGCCTTGCCCTGGTAAAATATTG--TTCTCCCACCCAT
TGACCAGAGCTGCTG-----------------------------------------------------------------
-----------------------GATCGATCTGGCGGCATCTGCATGCTCTAGACTCCAGAGTTTCTCGAACACTTGCTA
CGCAAACCGTATATATTGATTGCGAGCAGTC----GA----GAGCATTTCCCGCGGTCGGAGGAGGACGACGTGAACAGC
ATCTCCTCTCCTGGCCATTTTGCTACGTTACCGGCCGGGAGACTGATGATACCAACACAAATCGACAGGGGGGCTGTGGG
CACGTGGCAAGTGGAGGGGGAAGGTTGGTGCGTGGCCGTAGCTCATAACTAGGC--------------GGACATCCACAG
TGAGG--GAGAGGGACACGCGGGCCCGGTACCCCTTAACC-TTTTCCTTTTGTTCATCTGTGTAAGAAACGGCACCATGC
ATGCAGATCGAGCTGG----------------------------------------------------------------
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----------------------------------------------------CTAATTAAGCTGGATGAAACGACCGCTA
ACTCCTTTCCTTAAGAGAGAGATCTCC-TTTTCCTAATCTGCATTTCTCTTGGCCTACGTACGTCATCGACCCTGTCTTG
TATGGAG--------------GCTCTCCCCGTCTTCTGGGCTTCTGGCCAACCGGCCGGCCGGTGCCTCCCTAGCTAGCT
ATAAAAGCCCCCAGTCGTCTCCCATCCTTCTTCCCCATCGCACTTCGCAGCTAGCCGCGCGCCCACTCTACTTCCGACCA
CACAGCCTCTCAGTCGACCGACCTTCGCTCGCCCTGCATTGTTCTGTGAAGACGATGTCTGGCAGGAGGTCGCGCGGCTC
CGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAGGCTCCAGACCCTGCTCCCCACCGCGCGCCGCCGCGGCAGCAGCA
GCAGCCAGGTACGACGACCGACACGACTAGTTTCATCAGTTTGCAGCTAGCACATGCGCTTGCATGTCAGCATGTGTGCA
GCCAAGCCACGG--------------------------------------TGC-AAGCTTAGTGTGTTTATGGGAGGTTT
ATGGAAGCTTGGTAATGAATCGGTG----GATGAATGCATGCAGGCGTCGACGACGAAAATGCTCAAGGAGACGTGCAGC
TACATCAAGAGCCTGCACAGGGAAGTGGACGACCTCAGCGACCGCCTCTCCGACCTCATGTCCACCATGGACAACAACAG
CCCCGCCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTAG--------ATACCTGCTCATCATCATCATCATCATCATG
GATCACCTCCTGCTGATTGTCCTAAGCTAGCTCATCATCTACGTACAGCTCCTGCATGCCTAGCTAATTAAGCGCATATG
GTCTACACATACAGTACATGGTATATATGCCGTCCGTCGATCTCTGCAAGCATACATATGCAGATCGATCGATACCTAA-
------GGACTGCATGGTAA----GGCTGGTCTAATTTACT-TGGTAGGGCATCCATCAT----TAGCTAGGGCCGCCAC
CTAAGTTCTATAGCTGCTTAATTAGCTCACCCTTGCATGTGGTTTCCTCCCGGTTTCCATCCCTCCGATCCCCCTCTCTC
ATGTTCTCATCTGCCTGTGTAAACTTGGTTACTTATTTGCAGTCTGGATCGAGTTGTTTCCCCTAGAGACAACCGGCCGA
CCGCTAGCTACCCATCCGGTGGTGGTACTGCTAATA---TACTGCTCCTACTCGGTATCAATCACCCATGAATGTATGTA
CTATGTACTGTCGTGGCTTCGGCTGAATGACTATTATAATTAATCCAAACTGATTATGTTATCTGT--TAAAGCTCCACG
AGATCTGCTGTTGTACTGATTATGTTA-----------------------------------------------------
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-------------------------------------------------------------------TTATTAGCAATAC
GTACACTCTTGGTTCATGTGCTCGTTGATTACTCAAGACAGTAACGGACGCGCACACGATGGCGAACCCACCGGGCGGCC
GTCGATCGTCTCTATCTCGCGTAGTACTGTTGATACTTCAAGTCG-----CTGCTGGTAGGCACAGCACAGGATTACCGG
CCGCTCTTTCGTGGAAGCTTCGGCCTCTCTGCAGTTGCACTCATCTCCATCCACCGGTGGTCGCGGGTGTG---AGAAAG
GGATGCCAGACGGTTCATTGCTTACGCCGATCCGGGAGGAGGAATTGACAGGCCGCCGCTCGCTAGCCGACGA----CGG
ATCAACAGTGCGCCAGTCGGCCACTACTCT-------GGCAGCCCGTCTCCTCTCGTGCATGGCATGGAACGTACGTGCC
CGGCC
>chr7B_92
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-----------AAAGTGTACTCCTCCTACCACATAGCACATAGGACAAGCTAGCAATGGGATCGATCCGCCGCTGCCTGC
AGTACCCGACCGGCCGCTAGGTCGAGGCGAGTTGTTTTGCTCCGGCACCGGGACATCGGGGGACAATGGCATCTTCCGGG
TCTCGTACTC-GGTCGCTCCGTGATGGGGACGTGCCCTGCCCTGCC-----CTGGTAAAATATCG--TTCTGCCACCGAT
TGACTAGAGCTACGTACC--ACGTTGCATACAGTATCCAAGAAAGTTGGACTATTTTACTATCAGAAGAGGGAGTGCATG
GTAAACGAAAGGACCAGCTGCTCGATCGATCTGGCGGCATATGCACGCTCTAGACTCCAGAGTTTGTCAAACACTTGCTA
CGCAAACCGTATATATTGATTGCGAGCAGTCGATGGA----GAGCATTTCCCGCGGTCGGAGGAGGACGACGTGAACAGC
ATCTCCTCTCCTGGCCATTTCGCTACGTTACCGGACGAGAGACTGATGATACCAACACAAATCGACAAGGGGGCGG-GGG
CACGTGGCAAGTGGAGGGGGGAGGTTGGTGCGTGGCCGTAGCTCATAACTAGGCAGCGGAGGGCCCACGGACATCCACAG
TGAGG--GAGAGGGACACGCGGGCCCGGTACCCCTTAACC-TTTTCCTTTAGTTCATCTGTGTAAGAAACGGCACCCAGC
AGATCCAGCAGCTAAGGGCATCTCCAGCCGCGCCACCAACAGGCCCTCCCCAGGCGATTTTGCCGCGCCGGCGCCAAAAA
AAGGCCCCGGTCGCGTTCTCAAAAACCCGTTTTTCGCCGGCTCGGCCCAAAACTGGTGCCGGCGGACCCAGGCCGAACCC
GACGCCCCGGGGGGCGCTTGGGGAGCCGGCGGACCCAGGCCGAACCCGGCGCCCTGGGGGGCGCTTGGGGAGCCGGCACA
AGCGAAAAAGGCGCGTGGGCCCGCCCTGAGGCGACCCGAGGGCCTTTTCCCGCCGTTTCTTGACGCTTTTCCCTCGCATA
TCTCCCGCTCGCTCGCCTTCCTCCCGCCATTCTCTCCCTTTCTCCCGCCAAACCCCCTCTCGCTCGCCGCGAAGAAGTAC
GCCATGCCATCGAAGAAGTACGCCATGCCGCGCGCGGCGGCAACCGCGACTGGCGCCATGGCCCAGCCGAAGCAGAGGAA
GCCGAGGGCGCCACCATCGAAGCCACCGGGCCTGTCGAACGCCGAGTGGAGGGTGGAAGTTCAGCGGCGCGAAGCAGTCA
CCGCCGACAGGCGGAACAGGGCCATAGCCAAGAAGGCCCGCGACAACGCGGCGCGCGCAGCGGCGTCTTCCTCATCGGTC
GACCAGGCGGGGATGAATCCACCCGTCGCCAGCCACGCCCAGTACGCGCCCTGGGGACAGCAAGGCGCCGGATCTCCATG
GGGTTCATCTTCGCCCGGCTACGCCAACGGCGACGCGCACGGTGGGTTCAACCCAAACGTGACCTTCCCTCATGGTCACC
CCGCTACGCGCACGCCCTCGCCCGCCTTCGTCGGCGTGCAGTACCCTCCATACAACTACTCGCCGCCCGCCGCCTACGCG
TCCACACCGACGCCCCATCTCTACCGTGGACCGCTACCCTTCTCGCACCTCGGCGACGCCGACGACACGGGAGCCGACAT
GGACGACATCATCGCGACAGGATCGACCGCGGCCGCCGCGTCTCCCGGGTTCGCCACCCAGGACGAGGTAGTGGACCTCA
GCGGCGACATGGGGAAAAGCGCCGACGCGGCAACCGCGCGAGTGCAGGAGTCCATCGAGCATTGCCTCGCCGACGCCCAG
GCCCGGGCCGTCCTACGCGAAGAGAAGACCGACGACGACGCCGACGACGCCCACGACCACACGGACGCCAAGCCCGAACG
ACGCCTCTACATCGCCGCTCAGCAGTGCCGAAGCCGCGCCGACGCAGCCCAGCACCGAAGCAGCTCCGACACCGACGAGC
CCGCGCACGCCTACTCCGCCAACGCCTGGAGCCGACCCCGCCGAGTGAATCGTTGCGCACACGAACTTGCGGCGGCGGCG
CTCTGTTTTTTGTAACGCCAGACTACGTCCGATTGCCGGATTTGCGGCGTCTTTTGAGAGCGGGAACGACCAAGTTTAAA
TTTCCCGCATCCTGGGGCCGGCGCGTGGGGGCGTGACTGGGAGCTAGGTCGCCCCAGGGGCCGAACTAGCGCCGGCACGC
CCCCAGGCCGCTCTATTTAGACGCTCTGGGGGGCCGAACGGCTGGAGATGCCCTAATTAAGCGGGAAGAAACGACCGCTA
ACTCTTTTTCTTAAGAGAGATATCTCTTTTTTCCTAATCTGCATTTGGCTTGGCCTACGT----CTTCGCCCGTGTGTTG
TATCCATCTTAA-----TTTTGCTCTCCCCGTCTTCTGGGCTTCTGGCCAACCGGCCGGTGCCTCC--------CTAGCT
ATAAAAGCCCCC---CGTCTCCGTTGCTTCTTCCCCATCGCACTTCGCAGCTAGC----CGCCCACTCTACTTCCGATCA
CACAGCCTCTCCATCGACCGACCTTCGTTCGCCCTGCATTACTCTGTGAAGACGATGTCTGGCAGGAGGTCGCGCGGCTC
CGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAGGCTCCAGACCCTGCTCCCCACCGCGCGCCGCCGCGGCAGCAGCA
GCAGCCAGGTA---CGACCGACACGACTGGTTTCATCAGTTTGCAGCTAGCACACGCGCTTGCATGTCAGCATGTGTGCA
GTCAAGCCACGGACGCAGGCAGCTTGACTAGCTAGCTAGTTCAGCCAGAGTGC-AAGCTTAATGTGTTTATGGGAGGTTT
ATGGAAGTTTGGCACTGAATCGGTG----GATGAATGCATGCAGGCGTCGACGACGAAAATGCTCAAGGAGACGTGCAGC
TACATCAAGAGCCTGCACAGGGAAGTGGACGACCTCAGCGACCGCCTCTCCGACCTCATGTCCACCATGGACAACAACAG
CCCCGCCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTACCTAGCTGGCTGACTGCTCATCATCATCATC---------
GATCACCTCCTGCTGATTGTCCTAAGCTAGTTCATCATCTACGTACAGCTCGTGCAGTCCTAGCTAATTAAGCGCATATG
ATCTACACATACAGTACATGGTATATATGTCGTCCGTCGATCTATGCAAGCATATATATGCAGATCGATCGATATCTAAT
TAAGGAGGACTGCATGCTAAGGCCGGCTGGTCTAATTTACTTTGGTAGGGCATCCATCATTAGCTAGCTAGGGCCGCCAG
CTAAGTTCTATAGCTGCTTCATTAGCTCACCCTTGCATGCGGTTTCCTCACAGTTTCCATCCCCCC--TCCCCCTCTCTC
TTATTTTCATTTGCTTGTGTAAACTTGG----TTATTTGCAGTCTGGATCGAGTTGTTTCCCCTAGAGACAACCGGCCGA
CCGCTAGCTACCCATCCGGTGGTGGTACTGCTAATATACTACTACTGCTACTCAGTATCAATCACCCATGAATGTATGTA
CTATGTACTGTCGTGGCTTCGGCTGAATGACTAT--TAATTAATCCAAACTGATTATGTTATCTGTGCTAAAGCTCCATG
AGATCTGCTGTTGTGCCGATTATGTTA-----------------------------------------------------
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-------------------------------------------------------------------TTATCAGTAATAC
GTACACTCTTGGCTCGTGTGCTCGTTGATTACCCAAGAAAGTAACGGACGC--ACACGATGGCGAACCCACCG---GGCC
G----TCGTCTCTATCTTGCGTAGTACTGTTGATACTTCAAGTCG-----CTGCTAGTAG-----GCACAGGATTACCGG
CCGCTCTTTCGTGGAAGCTTCGGCCTCTC------TGCACTCATCTCCATCCACCGGTGGTCGCGGGTGT---AAGAAAG
GGATGCCAGACGGTTGATTGCTTACGCCGATCCGGGAGGGGCAATTGACAGGCCGCCGCTCGCTAGCCGACGAG----GG
GTCAGCAGTGCGCCAGTCGGCCACTACTCT-------GTCAGTCCGTCTCCTCTCGTGCATGGCAT--------------
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>chr7A_158
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----CCCGACCGGCCGCTAGGTCGAGGCGAGTTGTTT-GCTCCGGCAACGGGACATCGGGGGACAAAGGCATCTTCCGGG
TCTGCTACTCGGCTCGCTCCCTGATGGGGACGTGCCCTGCCCTGCC-----CTGGTAAAATACTTGTTTTTCCCACCCAT
TGACCACAGCTACATACTCTACGTTGCATGC-----CCAAGAAAGTTGGACTGCTGCACTACTGTCA----GAGTACATG
GTAAACCAAAGGACCGGCTGCTGGTCTGATCTGGCGGCATCTGCACGCTCTAGACTCCAGAGTTTCTCGAACACTTGGTA
CGCAAACCGTACATATTGATTGCGAGCAGTC----GACGGCGAGCATTTCCCGCGGTCGGAGGAGGACGACGTGAACAGC
ATTT----TCCTGGCCATTTCGCTACGTTACCGGCCGAGAGACTGACGATACCAACACAAATCGACAGGGGGGCCG-GTG
CACGTGGCAAGTGGAGGGGGGAGGCTGGTGCGTGGCCGTAGCTCATAACTAGCG-GCGGAGGGCCCACGGACATCCACAG
TGAGAGAGAGAGGGACACGCGGGCCC------------------------------------------------------
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>chr7A_628
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-----------------------------ACCCCTTAACTTTTTTCCTTTTGTTCATGTGTGTAAAAACAGTACGGCTGC
T-------------------------------------------------------------------------------
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------------------------------------------TGCAGAGCAGCTGATTAAGCTGGATGAAACGACCGCTA
ACTCCTTTTCTTAAGAGAGAGATCTCC-TTTTCCTATTCTGCATTTGTCTTGGCCTACGT----CATCGACCCTGTCTTG
TATGCATGCATCTTAATTTTTGCTCTCCCCGTCTTCT---CTTCTGGCTAACCGGCCGGCCGGATCCGTCT-------CT
ATAAAAGCCCCCAGTCGTCTCCCATCCTTCTTCCCCATCGCACCTCGCAGCTAGC----CGCCCACTCTACTCCCGATCA
CACAGGTTCTCAAT----CGACCTTCGCTCGCCCAGCATTATTCTGTGAAGACGATGTCTGGCAGGAGGTCGCGCGGCTC
CGTGTCGGAGGAGGAGATCAACGAGCTCATCTCCAGGCTCCAGACCCTGCTCCCCACGACGCGCCGCCGCGGCAGCAGCA
GCAGCCAGGTA---CGACCGACACGACTAGTTTCATCAGTTTGCAGCTAGCACATGCGCTTGCATGTCAGCATGTGTGCA
GCTTGACTAAG----------------CTAGCTAGCTAGCTCAGCCAGAGTGCAAAGCTTAATGTGTTTATGGGAGGTTT
ATGGAAGCGTGCTAATGAACATATCGATCGATGAATGCATGCAGGCGTCGACGACGAAAATGCTCAAGGAGACATGCAGC
TACATCAAGAGCCTGCACAGGGAAGTGGACGACCTCAGCGACCGCCTCTCCGACCTCATGTCCACCATGGACAACAACAG
CCCCGCCGCCGAGATCATCCGCAGCCTCCTCCGCTAGCTAGCCAGCTACATGGCTACTCATCGTCGTCAACCACACACAT
CG---------GCTGATTGTCCTAAGCTAGTTCATCATCTGCGTACATCTCGTGCATGCCTAGCTA--------------
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---------CTGCATGCTGAGGCCGGCTGGTCTAATTCACTTTGGTAGGGCATCAATCAT----TAGCTAGGGCCTTCAC
CTGAGTTCTATAGCTGCTTAATTAGCTCACCCTTGCATGTGGTTTCCTCCCAGTTTCCATCCCTCCGATCCGCCTCTCTC
ATGTTCTCATCTGCCTGTGTAAACTTGGTTACTTATTTGCAGTCTGGATCGAGTTGTTTCCCCTAGAGACAACCGGCCGA
CCGCTAGCTACCCGTCCGGTGGTGGTACTGCTAATATACTACT---CCTACCCAGTATCAATCACCCATGATTGTATGTA
CTATGTACTGTCGTCGCTTCGGCTGAATGACTAT--TGATTAATCCAAACTGATTATGTTATCTGTGCTAAAGCTCCATG
AGATCTGCTGTTGTACTCCCTCCAGCCCTTTTTACTTCGTGTATTAGATTTGTCTCAAGTCAAATTTTACAAACTTTGAC
CAAATTCATATTAAAAATATCAATATTTGCAATAACAAATATATATATATATATATATATATATATATGTATACTATGAA
ACTACATTACATAATGAATGTGATAATATTGATTTGGCATTGTGAATGTTGATACTTTTTCCTGTAAATTTGGTCAAAGT
AGAGATATTTTGACCGGAGACAATACGTATATGCAGACAAAAAGGACCGGAGGGAGTACTGATTATGTTATTAGTAATAC
GTACACTCATGGTTCATGTGCTCGTTCATTACCCAAGACAGTAACAGACGC--AGACGATGGCGAAGCCACCGGACGGCC
G----TCGTCTCCATCTCGCGTAGTACTGTTGATACTTCAAGTCGAGTCGCTGCTGGTAGGCACAGCACAGGATTACCGG
CCGCTCTTTCGCGGAAGCTTCGGCCTCTCTGCAGTTGCACTCATCTCCATCCACCGGTGGTCGCGGGTATGAGAAGAAAG
GGATGCCAGACGGTTGATGGCTTACGCCGATCCGGCAGAGGAAATCGACCGGTCGCCGCTCGCTAGCCGACGACGTACGG
ATCAGCAGTGCGCCAGCCGGCCACTACTACTCTGTCAGTCAGTGCGTCTCCTCTCGTGCATGGCATGGAACGTACGTGC-
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS----S-----------------S------------------------S-----S-----------S---
--S-----------------------------------------------------------------------------
---------------------S------------------------SSSSS-----------------------------
-----------S-SS-----------------------------------------------------------------
---------------------------------------------S----------------------------------
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--------------------S----------------S------------------------------------S-S---
--------------------S-----------------------------------------------------------
----------------------------------------------------------------------------S---
-SSSSS-S-SSSSSS-----------------------------------------------------------------
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--------S-------------------------------------S-------------SSSS----------------
----S-S---------------------------------------------------------S--SS-SSSS------
-------------------------------------------------------SSSS------------------S--
------------S---------------------------S---------------------------------------
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-----------SSS------------------------------------------------------------------
-------------------------------------------------------------S------------------
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---------------------------------------------------SS------------------SS--SSSSS
------------------------------S--------------------S----------------------------
S----------------------------S-------------S----------S-------------------S-----
----------------S---------------------------------------------------------------
---------------------------------------------------S----------------------------
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-------------------------------------------S---------S--------------------------
----------------------------------SS------------------------------------------S-
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--------------------------------------------------------------------------S-----
--------------------------------S------------------SS---------------------S-----
-SSSS---------------------------------------------------------------------------
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---------------S-----------------------S-S--------------------------------------
----S---------------------------------S---S------------------------------------S
SSSSS
>forward_815
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---------------------------------------------------------------------------CATGC
ATGCAGATCGAGCTG-----------------------------------------------------------------
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>reverse_3492
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---------------------------------------------------GGTTTCCATCCCTCCGATCC---------
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