>input_sequence_80835
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-----------------------------------------------------------------------ATGAGGGTT
TTTTTCTGGGG-AAATGCTGCCAATCGGCGTGAGATCGTGGTGGTCGCTCGCTTACAATGCTTCCCCTGCCCTC-GACCA
GCAGAGATACGAGTGGTGGTGTGCAGAGCTGCAACTGTTTGTGAGCGGAGCTGTGATCCTCAGCCATCGGAGCAGCGGTG
CGTGGTGCTATCAGCATGGGCATGCACTGCTACGAATTGCCTGAGGCAGCGGT---------------------------
-GGGGTGCGGTGAACAGAGGGCAGCTGTGCTGCAAGCGGCAGA-----CTGCTGGTGGTGCTGCGAA--------GCCTC
ATGCCGGAGTTGCA------------------------------------------------------------------
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----------------------------------------------------------------AACAGGGTGACAGGGT
CACACGACAGTGCTGCGAGGGCAAAGGGCCGTGTCAGGGCTATGACACGGCATGGTGGGAGGTGGAAGGTGGGAGATACA
AGGAGCCATGACACGGCGAGGTGA--------------------------------------------------------
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>chr7A_1_TraesCS7A01G124100
TCTAGTTATTGTTGGAAGATACTCCCTCTGTCCCAAAATAAGTGTCTCAACTTTAGTACAA-------------------
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----------------AGGGAGTATTACTTAAGGCTGATCTAACCAGTAAACTGTTATGAGTATTTCTTAGACAAGCTAG
TTTGGGCTGAAAAGGCAGTCAATCTTATCCTAGGCTAATGTTATATGGCCATTGCTTTGAGCAGTTAATCTTATCCTGGT
CAATGTTATATGGTCATTGCCTGGAGTGTGCTGACTTT-AAGGTGATGATTTTACTACTATGCAGGTCGCAAGCCAATGG
ATGGTACCTGCTTGCTTTGCTGTCACTACTTGTAAGTAACATATGCATAGTTTGATATGTATGAGGAAGGCGTGTGATTT
CTCATTCGATTCCTTGTTGAACACGCAGGCATTTTGGTGTACCTCAGTTGCAGAGCGCAACAAAGGCGCCGTCGACCAAG
GAAAGGGTCCGCAACCGGTCGTCTGTCAAGTTCGGTATAATATGGAAAGTGGTGTGGGGCCAAAGAAGGTTTTGGCTCCA
GCGTGTCTGGCCATCT----GCCATGGTATATGATATAACCGAAGCTACATCGGTCCACTGACTGGACAT---AA-----
--------------------------------AGCTCGCAATGGATGTCAATCGAGGTCCAAGTCGTGG-TGGCTCATGT
TTAGTCTGTGCGAAGAGAGCCCA--GTCAAACACCTCTGCAACTGCGTGGCTATGTTCCAACATTTCATGTCATG-----
-CGACATCGCCATCGCCACCCAGTTGTACAAAACT----GTCTATAATAATAAATAGACTGCTTTAGGACATAATAGGCG
AGAGCTAATTCAGTAGGAAGAGGCTAGGGTTGACGTCTTTCTGTCTCTTTCTTCTTCTTTTTCATCTCTTCTTATTCTTT
GTTTTTA----TCTTTTGCAAAAGGATGAGTTGCTTCTTGTAGGTCAG--------------CAAGCCTTTCGAGTTTTC
AGGGTCGCTATGCTTCAGCTTGTAAGTACTGGACGAGCTCATCTGAAAACAGAGGAAGTCCTCAACAGTTTATGAGGGTT
TTTTTCTGGGG-AAATGCTGCCAATCGGCGTGAGATCGTGGTGGTCGCTCGCTTACAATGCTTCCCCTGCCCTC-GACCA
GCAGAGATACGAGTGGTGGTGTGCAGAGCTGCAACTGTTTGTGAGCGGAGCTGTGATCCTCAGCCATCGGAGCAGCGGTG
CGTGGTGCTATCAGCATGGGCATGCACTGCTACGAATTGCCTGAGGCAGCGGT---------------------------
-GGGGTGCGGTGAACAGAGGGCAGCTGTGCTGCAAGCGGCAGA-----CTGCTGGTGGTGCTGCGAA--------GCCTC
ATGCCGGAGTTGCA------------------------------------------------------------------
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----------------------------------------------------------------AACAGGGTGACAGGGT
CACACGACAGTGCTGCGAGGGCAAAGGGCCGTGTCAGGGCTATGACACGGCATGGTGGGAGGTGGAAGGTGGGAGATACA
AGGAGCCATGACACGGCGAGGTGAGAGGTGGGAGAGAGAAGCCTTT-TTTTAGGAGGAGAGAAGCCTTTTTTTGGTTGTG
ATACAATGGTGCCGAACAGGGGAGGTGGGAAAGAGAAGGGTTTTCTGGCTGCGATCCAATGGTGTTGAACAACCTGTCTT
T-TAAGTGATGAGCAACTTCATGTGCCATTCGTCGCACC---------CCACAGCGGCGCAAACAGAGACCTCCTGTAAG
CCAAACAACAACTTCTGAAATGTTTC-----------------------------------------------------A
TGGACAAATTCGCTGCCCGTCTGCCCTGAAATGCTTCTAAAATCAACTTTGAGGCCCCTGTTTCCATGGGCAAATTCGCT
CCCCGTCTGCCCTAAAATGCTTCAAATCCTCCACCCTGCTCCTACGCTAGCCTTTTTTTTCTTCTGAAACGGGTAATAAA
TTATTTTGAAAGGGGCTCCTACGCTAGTCAACAGCCTGCTCAATGCTATTTG---------------------TACGTAC
GAGTTTTACTCTAGGTACATATTCCTCC-TTTGACGGCACGCACGATTTAAGTAAAACTTTTTATGCACTCTCTTCATCC
TAAAATTCTTGTCTTACATTTGTCTAAATATGGATGTATCAAGTCACATGTTAGTATTAAATACATCCGTATTTAGATAA
ATTTAAGACAAAAGTTTTGGAACGGAAAGAGTAGTAACTAGGACATGTGCCCGTGCGTTGCAACGGGACAAAAAAAATAC
TATTTTTTTAAATAAAAATCGATGCTATTTTCCTCTAAATTATTATTCAAAAATTTATATATCAAATAAAGTTATGTTAT
CAAATTTAGCTGCCAATTTCTTAGAAGATTATTGAAAATAATGATTTCTCATGAATAGATTGAACCTCCGTAAGAAGATA
AGATAACGTAAGATTGGAGCCTTGTGGGCCACCCCCCTCCGCATATCTCTCTCCTCCCGTCCCTATCATCTTTCCTCCAG
AGATTGGGATCAGGAGCGAGCCACACACCACAACTTCCTTTCTTCCCGCCATGCGTGTTCTCCGGCGAGC
>chr7B_1
TCTAGTTATTGTTAGAAGATATTCTCTCCGTCCAAAAATAAGTGTCTCAACTTTAGTACAA-------------------
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----------------AGGGAGTATTACTTAAGGCTGATCTAACCAGTAAACTGTTATGAGTATTTCTTAGACAAGCTAG
TTTGGGCTGAAAAGGCAGTCAATCTTATCCTAGGCTAATGTTATATGGCCATTGCTTTGAGCAGTTAATCTTATCCTGGT
CAATGTTATATGGTCATTGCCTGGAGTGTGCTGACTTT-AAGGTGATGATTTTACTACTATGCAGGTCGCAAGCCAATGG
ATGGTACCTGCTTGCTTTGCTGTCACTACTTGTAAGTAACGTACGCATAGTTTCATATGTATGAGGAAGGCGTGTGATTT
CTCATTTGATTCCTTCTCGAACACACAGGCATTCTGGTGTACCTCAGTTGCAGAGCGCAACAAAGGCGCCGTCGACCAAG
GAAAGGGTCCGCAACCGGTCGTCTGTCAAGTTCGGTATAACATGGAAACTTGTGTGGGGCCAAAGAAGGTTTTGGCTCCA
GCGTGTCTGGCCATCT----GCCATGGTACATGATATAACTGAAGTTACATCGGTCCACTGACTGGACATAAAAA-----
--------------------------------AGCTCGCAATGGATGTCAATCGAGGTCCAAGTCGTGG-TGGCTCATGT
TTAGAATGTGCGAAGAGAGCCCA--GTCAAACACCTCTGCAACTGCGTGGCTATGTTCCAACATTTTGTGTCATGCGCCA
TCGCCATCGCCATCGCCATCCAGTTGTAACAAACTCTGTGTCTATAATAAT-AATAGACTGCTTTGGGACATAATAGGCG
AGAGCTAATTCAGTAGGAAGAGGCTAGGGTTGACGTCTTTCTTTCTTTCT----TTCTTTTTCATCTCTTCTTCTTCTTC
CTTTTTTCTTTTCTTTTGTGAAAGGATGACTTGCTTCTTGTAGGTCAGT--------------AAGCCATTCTAGTTTTC
AGGGTGGCTATGCTTCAGCTTGTAAGTACTGGACGAGCTCATCTGAAAACAGAGGAAGGCCTCAGCAGTTTATGAGGGTT
TTTTTCTGGAGTAAATGCTGCCAAT-GGCGTGAGGTTCCGT--GTCGCTCGCTTACCATGCTTCCCCTGCCCTCAGACCA
GCAGAGCGACGGGTGGTGGTGTGTGGAGCTGCAACCGTTTGCGGGCAGAGCTGTCATCCTCACTGCCT------------
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----------------GAGGGCAGCTGTGCTGCAAGCGGCAACACAGCCTGCTGGTGGTGCTGCGAGGCTGCGAGGCCGC
ATGCCGGAGTTGCA------------------------------------------------------------------
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----------------------------------------------------------------AGCAGGGCGATGAGGC
CACACGAAGGCGCTGCAAGGGCTGTT-----TGTGGGGGCTATGACACGGTGTGGTGGGAGGTGGAAGGTGGGAGATACA
AGGCGCTATGCCGCGGCTAGGCTGGAAGCGGGAGGCAGAAGCTTTT-TTTGGC-----------------------AGCG
ATACAGTGGTGCCAAACAGGGGAGGTGGGAGAGAAAAGGGGTTTTTGGCCGCGATCCGATGGTGCCGAGCAGCCTGTCTT
GCTAAGCGATGAGCAATTTCATGTGCTGTTCGTGGCACC---------GCACAAGGGCGCAA--AGAGACCTCCTGGAGG
CCAAGCAACAACTCTTTTAATTCTTCCACTACGCCATCACTATGAGTTTCCAGGATCCAACATTTAGGCCCCGATCTCTA
TGGCCAAATTGGCTG-----------------------------------------------------------------
-CCCGTCTGCCCTGAAATGCTTCAAATCCTCCACCCGA------------------------------------------
----------------TCCTACGCTAG-----------------------------------------------------
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>chr7D_1
TCTAGTTATTGTTAGAAGATACTCCCTCCGTCCCAAAATAAGTGTCTCAACTTTAGTACAAAGGGAGTACTCCCTCCGTC
CGGAAATACTTGTCACAGAAATGGATGAATCTAGATGTATTTCAATTATAGATACATTCAATTTTATCCATTTCTCCGAC
AAGTATTTTGGGACGGAGGGAGTATTACTTAAGGCTGATCTAACCAGTAAACTGTTGTGAGTATTTCTTAGACAAGCTAG
TTTGGGCTGAAAAGGCAGTCAATCTTATCCTAGGCTAATGTTATATGGCCATTGCTTTGAGCAGTTAATCTTATCCTGGT
CAATGTTATATGGTCATTGCCTGGAGTGTGCTGACTTTTAAGGTGATGATTTTACTATTATGCAGGTCGCAAGCCAATGG
ATGGTACCTGCTTGCTTTGCTGTCACTACTTGTAAGTAACGGACACATAGTTTCATATGTATGAGGAAGGCGTGTGATTT
CTCATTTGATTCCTTCTCGAACACACAGGCATTCTGGTGTACCTCAGTTGCAGAGCGCAACAAAGGCGACGTCGACCAAG
GAAAGGGTCCGCAACCGGCCGTCTGTCAAGTTCGGTATAATATGGAAAGTTGTGTGGTGCCAAAGAAGGTTTTGGCTCCA
GCGTATCTGGCCATCT----GCCATGGTATATGATATAACCGAAGCTACATCGGTCCACTGACTGGACATAAAGA-----
--------------------------------AGCTCGCAATGGATGTCAATCGAGGTCCAAGTCGTGG-TGGCTCATGT
TTAGTCTGTGCGAAGAGAGCCCA--GTCAAACACCTCTGCAACTGCGTGGCTATGTTCCAGCATTTCATGTCATGCGACA
TCGCCATC------GCCATCCAGTTGTACAAAACTCTGTGTCTATAATAAT-AATGGACTGCTTTCGGACATAAGAGGCG
AGAGCTAATTCAGTAGGAAGAGGCTAGAATTGACGTCTTTCTTTCTTTCT----T-CTTTTTCATCTCTTCTTATTCTTC
TTTGTTT-TTTCCTTTTGAAAAAGGATGAGTTGCTTCTTGTAGGTCAGCACTTGTAGGTGAGCAAGCCTTTCGAGTTTTC
AGGGTGGCTATGCTTCAGCTTGTAAGTACTGGACGAGCTCATCTGAAAACAGAGGAAGTCCTCAGCAGTTTATGA-GGGT
TTTTTCTAGGG-AAATGCTGCCAATCGGCGTGAGA---------------------------------------------
------------GTGGTGGTGTGCGAAGCTGCAACCGTTTGTGAGCGGAGCTGTGATCCTTGCCCATGCGA---------
--------------------CATGCACTGCTACGAATCGCCTGAGGCGGCGGTGCTGCGTGTGTCTGCGTGTGTTGACGG
TGGGGCGCGGTGAACAGAGAGCAGCTGTGCTGCAAGCGGCAACACAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAACAGGGTGACAAGGC
CACTCGACAGTGCTGCGAGGTCTAAGGGCCGTGTCGGGGCTACGACACGGCGTGGTGGGAGGTGGAAGGTGGGAGATACA
AGGGGCCACGACACGGCGAGGTG--AGGAGGGAGAGAGAAGCTTTTTTTTGGC-----------------------TGTG
ATACAATGGTGCCGAACAGGGGAGGTGGGAAAGAGAACGGTTTTCTGGCTGCAATCCAATGGTGTCGACGAGCCTGTCTT
GCTAAGCAATGAGTAACTAAATGTGCCACTCGTCGCGCCGCTGTTACCGCACAGCGGCGCAAACAGAGACCTCCTGTAAG
CCAAACAACAACTCCTGAAATGCTTC-----------------------------------------------------A
TGGGAAAATTCGCTT-----------------------------------------------------------------
-CCCGTCTGCCCTGAAATGCTTCAAATCCTCCACCCT-------------------------------------------
--------------GCTCCTACGCTAGTCAACAGCCTGCCCATATATTTATTCAACTAGAGCAACGCTATTCTTACGTAC
GAGTTTTACTCTAGGTAGTTATTCCTCCTTTTGACGGCACGCACGATTTAAGTAAAACTTTTTATG--------------
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>chr7B_81
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-----------------------------------TGATCTAACCAGTAAACTGTT------ATTTCTTAGACAAGATAG
TTTGGGCTGAAAAGGCAGTCAATCTTATCCTAGGCTAATGTTATATGGCCATTGTGTTGAGCAGTTAATCTTATCGTAGT
CAATGTTATATGTCCATTGCCTGGAGTATGCTGACTTT-AAGGTGATGACTTTACTATTATGCAGGTCGCAAGCCAATGG
ATGGTACCTGCTTGCTTTGATGTCACTACTTGTAAGTAATGTACACATAGTTTCAAATGTATGAGGAAGGCATATGATTT
CTCATCCGATTCCTTCTCCGACATAGAGGCATTATGGTCTACCTCAGTTGCAGAGCACAACAAAGGCGTCATCAACCAAG
GAAAGGGTTCACAGCCGGTCGTCTGTCTAGTTTGGTATAATATGAAAGTTGG-GTGGGGCCAAAGAAGGTTTTGGCTCCA
GCGTATCTGGCCATCAGCCAGCCATGGTATATG--ATAACCGGAGTTACATTGGTCCACTGACTGGACTTAAAAGAAGCT
CTGCTCTGCTAGAGACCCTTGATCATGCTTCTAGCTCGCAATGGATGTCAACCGAGGTCCAAGTCAGTAATGGCTCATGT
TTAGTCTGTGCGAAGAGAGCCAAGGGTCAAAAACCTCTGCAACTGCGTGGCTATGTTCCAACATTTCATGTCATGTGA--
----------CATCGCCATCTAGTTGTAAAAAACTCTGTGTCTATAATAAT-AATGGACTGCTTTGGGACATAATAGGCG
AGAGGTAATTCAGTAGGAAGAGGCTAGAGTTGATGT-TTTCTTTCTTTCT----TTCTTTCTCTTC--------------
-----TTCTTTTCTTCTGTGAAAGGATGAGTTGCTTCTTGTAGGTTAGTT--------------AGCCTTTCGAGTTTTC
AAGGTGGCTATGCTTCATCTTGTTAGTACTGGACGAGCTCATATGAAAACAGACGAAGCCCTCAATAGTTTATGAGGGTT
TCTTTCTGGGATAAATGCTGCCAATCGGCGTGAGATCGCGTTGATCGCTCGCTTACCATGCTTCCCCTGCCCTT-GACCA
GCAGAGTTACGAGTGGTGGTGTGCGGAGCTGCAACCGTT-----------------------------------------
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>SNPs
-------------S--------------S---------------------------------------------------
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----------------------------------------S--S---------S--------------------------
---------------S-S------S--------S----------------------------------------------
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---S--------------S--------------------------------S-------------S--------------
------------------------------------------S---S-S-SSSS-------------------------S
S-----S-----------S-------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------S-S---------------S-----------------------
------S-----------------S----------S--------------------------S----SS--SSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-----------------S---------S--------------------------------
-----S-----------------------------------SS-----------------------S-----------S-
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----------------------------------------------------------------------------S--S
----------------------S------------S---------------S----------------------------
---S-------------------S----S-------------S-------SSSSSSSSSSSSSSSSSSSSSSSSSS----
-----------------------------------------------------------------S--S--S--------
S-----S-----------------------------------------S-------------------------------
-------------S--------S---------------------------------------------------------
---S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------------S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------------------------S--SSSS-S-S-S----------------------------
-----------------SS-----------------------------------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_514
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--------------TGTTGAACACGCAGGCATTT----------------------------------------------
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>reverse_2756
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-----------------------------------AACTAGGACATGTGCCCGTG-------------------------
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