>input_sequence_80833
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---------------------------------ATGGCGAACGCCGGGCTACGCGCCTACCGGGAGGTGCTGCGGCTGGT
GCGGCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAACTTCGTCAACTACCGCCACCTTTCTG
CCGACGACGACCTCGCCGGCCTCCTCCGCCGTGCACATGACCACTCCGCCTGGGTCCTCTCCAAGGTACAATAACGTCAA
CCGAATGCGGTGCTCCTTCCCACTCTCTGCGTGTTCATCGCACCATCCATTTCATTCGCGGCTCATGGGAATGGAATGCC
AATGGATCGACCTATTCCTGCCAGCTATCTCACTGTTCCTGGTTGTGTAACGCGTGGCTTGCAGTACTCCATCGACGCGG
CGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGTGAGGGCGGTGCCGAGTGA---------------------------
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>chr6D_1_TraesCS6D01G125700
TTATCTCATTCTTGTTCATTACATGGGATTGTGTGAAGATGACCCTTCTTGCGACAAAACCACAATGCGGTTATGCCTCT
AAGTCGTGCCTCGACACGTGGGAGATATAGCCGCATCGTGGGCGTTACAGGGGGTGTGCTTTTCGAGGGAGGGGTTTGTA
GTGTTGTGCTCTAGCACTATTGGACGCCTGGTCACTCTGTTAATGCAAGTGTTGCCTTCCCTTCATCACGATGGCTAGGG
AAAACTCGTTCCCTCCAAGCTTCGTCAGAGAGCCCATGGATTCACCTCTCCCCTATCTCCCGCTTCAGCAGCTGGTGGCA
GGGGTGA---TCCTGGTGCCTCCACTCCGGCTAGTAGTTTAGGTTAGGTTTTTTTTAATCCTCACAGGTGTGTCTCTCGG
GCTGACGTCCACACTTCTTCTTCAAGTTTGCCTTCCGTTCTCCAATCCTCTCTAAATTCGTCTATCTAGCTGTAATTACA
GAGCTCCAAG-GTAGATTTTTGTCATCTCCTTCGGTCGGCGAGGTTAT--GGTTTCTCGTCCTGCGTGCACGATGGCAAG
ATTTGATGTCAGTTATTTCAGATCTATTAAAAGGGTTTAGCGTTGACGATTGTGGCTCCAGTGTGTTGGTGCTTAGGGGC
ATATGCACGAAGACTTTCCGGCTACCGGTGACAAGGTCAAACCGGCTCTGATAGAGGAGTGGCGACAGTGGCACATCAAT
GGCTCGTTTTGGCAGCGATGGTGGTTGTTAGATGGTCTAGAGACCTCAATGTTATTTTTATTATGTTTGAAGTGCTGTAT
ACCTTTTGCGAAACTTTCAGATCCTTTTTGAGAAAAAAAAATAGTGA---------------------------------
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----------------------------------CTAAGAGGCTTTTGTATTACGGGACGGAGGGAGTAGTTAATTGGAG
TTTTTTCTTCCACTGTGAGTTTAGCAGACTACTACAGCACCGTACAAGCGTGTAGTACTACTTCCTAGTGCTTGTGCGCC
TTGCTCTACCAGACCTGGATTCGATCGGAGTCGATGGCGAACGCCGGGCTACGCGCCTACCGGGAGGTGCTGCGGCTGGT
GCGGCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAACTTCGTCAACTACCGCCACCTTTCTG
CCGACGACGACCTCGCCGGCCTCCTCCGCCGTGCACATGACCACTCCGCCTGGGTCCTCTCCAAGGTACAATAACGTCAA
CCGAATGCGGTGCTCCTTCCCACTCTCTGCGTGTTCATCGCACCATCCATTTCATTCGCGGCTCATGGGAATGGAATGCC
AATGGATCGACCTATTCCTGCCAGCTATCTCACTGTTCCTGGTTGTGTAACGCGTGGCTTGCAGTACTCCATCGACGCGG
CGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGTGAGGGCGGTGCCGAGTGAGGGGAAGATCGTGGCAGCAGCCCGTGG
CGCGGTGGTGCGTGCACGCAAGGTGTTCGGCTATATGACTCTGAGGT-GTTTTTCAAGTTCCATGCCCGAACAGGGTGAA
TTGCCCAGTTCTACCTGTATTGTTTTGTTTTAGAGCTGGGCGCTTTCATGTTTCCAAATGTTCTACAGTAGTGGGAAATA
AGATCAACATTCTGCTTCTAACTTGGTAATGTTTTGAACTCGGGCCGACTATTTAGAGGCTGTACGTAATCCCTCCGCTC
TGCAGCTCAACTCCGCTGCAGAGCGGAGCGGCATGCAGTTGTATTTTGGCGAGCGGCTAAAAGGGTGCTCCACACGCTCC
GCTCTGTAGTGAAGGAGTGGAGGATTGCCAAACACAGCCTTACTACATTGCTCCGTGTTCCAGTGCAGCCTTCGTATTG-
---CTCTGTTGACTGCCAACAACAGGCATCGTGGTCCTGCAACCTGAAATCTTAGCTGGATAACTTGGTAATTCAGTAAC
ATTGTGCATAGCCTCAAGTAGTCAAAACTTCTCTGGTTACATATTATAAATGTTTGTTTTGTTGTATGCTGGAATGAAAT
GTAGCTCGCATACTCATCCCAATCCTTAATGAAATGGAGCTCACGTATTCATCCCTATCCTTATTCAATCGGACCATCCA
AAATAAAAAATCCATGAAGTAGCTAAAGTGGGAAAAATTGATGCTCCAGAAGAGCCTCTAGTTTTTACTCAAATTTGTGC
TTAGCTGGTCAACAATGGAAAAGATGTTAGTATTGCCCTTCATCAACCTCACATGGCTCATAGTAGTAGTGACATGTTTC
CTTCTTTCTATGTTGGAGCACGCGTTCTGTTGTCCCTTTCTCCAGACAAATTGTGTAACTGAAACTGGAGTTCGGAGTCA
GGATGTAGATACTAATTAATTGAACTCCCACTGAACCATTGTGTCGGCATACAGCATAGATCAAGGTACGAAGTATATTT
AGTGCAATGGTTAATGTC
>chr6A_147
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------------------------------------------------------------------GGGAGGGGTTTGTA
ATGTTGCGATCTAGCACCATTGGACGCCTGGTCACTATGTTAATGCAAGTGTTGCATTCCCTTCATCACGACGGCTAGGG
GAAACTCGTTCCTTCCAAGCTTCGTCAGAGAGCCCATGGATTCACCTCCTCTCTATCTCCCGCTTCAGCAGCCGGTGGCA
GGGGTGA---TCCCGGTGCCTCCACTCCGGCTAGTAGTTTGGGTTAGGGTTTTTTAAATCCTTGCATGTGTGGTTCTCGG
GCGGATAACGACACTTCTTCTTTGAGTTTGCCTTC-GTTCTTCGATCCTCCCCGAATTCGTCTATCTAGTTGTAATTACA
CAGCTCCAA-CATAGATTTTTGTCATCTCCTTCTGTCGGCGAGGTTATATGGTTTTTCGTCGTGCATGCACGATGGCAAG
ATTTGATGTCAGATATTTCAGATCTATTAAAAGGGTTTAACATCGACGATTGCGGCTCCCGTGTGTTGGTGCTTAGGGGC
ATATGCATGAAGACTTTCCGGCTACCAGTGACAAGGTCAAACCGGCTCTGGTAGAGGAGTGGCGACAGTGGCACATCAAT
GGCTCGTTTTGGCGGCGACGGTGGTTGTTAGATGGTCTACAGACCTCAGTATTATTTTTATTATGTTTGAAGTGCTTTAT
ACCTTTTGTGAAATTTTCAGATCCTTTTTGAGAAAAAAAATAGTGACTAAGGCCTCTTTTGATTCATAGGATAGGATTAT
CGTAGGAATATGAATTTTATAGGAAATGAGATGACATGTATCTCAAATCTCATGAGTAAAAATAGAAAACAAGATGTCAT
TTGGTTGACATCAAAAGAATTTTTTCATTGAATCTAGGCTCATTTTTATTTTCCTATGAAATGTGAAGGATAGGAATCAA
TCTTATATAGGAATAGAAATCCATTCCTATGAACCAAAGGGCTCTAAAGGAAAAAATCCTATAAGAATTTTATCCTCTAG
AATTCTTATGAAATTCCTTCAAACTAAAGGAGGCCTAAGAGGCTCTTGTATTACGGGGCGGAGGGAGTAGTTAATTGGAG
TTTTTCCTTCCACCGTGAGTTTAGCAGACTACTACAGTACCGTACAAGCGTGTAGTACTACTTCCTAGTGCTTGTGCGCC
TTGATCTACCAGGCCTGGATTCGATCGGAGGCGATGGCGAACGCCGGGCTGCGCGCCTACCGGGAGGTGCTGCGGCTGGT
GCGGCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAATTTCGTCAACTACCGCCACCTATCCG
CCGACGACGACCTCGCCGGCCTCCTCCGCCGCGCCCATGCCCACTCCTCCTGGGTCCTCTCCAAGGTAACGTCACGTCAA
CCGAATGCGGTGCTCGTTCTCACTCTCCGCGTGTTCATCGCGCCATCCATTCCATTCGCGGCTCATGGGAATGGAATGCC
AATGGATCGACCTATTCCTGCTACCTATCTCACTGTTCCTGGCTGTGCAACGCGTGGCTTGCAGTACTCCATCGACGCCG
CGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGCGAGCGCGGTCCCGAGTGA-GGGAAGACCGTGGCAGCAGCCCGCGG
CGCGGTGGTGCGTGCACGCAAGGTGTTCGGCTATATGCCTCTGTACT-GGTTTTTAAGTTCCCTGCCCGAACAGGGTGAT
GTGCCCTGTTCTACCTCTACTGTGTTGTTTTAGAGCTGGGCGCTTCCATGTTTCCAAATGTTCTACAGTAGTGGAAAACA
AGATCAACATTCTGCTTCTGACTTGGTAATGTTCTGAGCTCGGATCGACTATTTAGAGGCTGTTCGGAGTCCCTCCGCTC
TG-----CAACTCCGCTGCGGAGCGGAGCGGC-------------------------TAAAAGGATGCTCCGCACGCT-C
GCTCTGTAGTGAAGGAGTGGAGGATTGCCGAACACAGCCTTACTACATTGCTCCGTGTTCCAGTGCAGCCTTCGTGTTG-
---CTCTGTTGACTGCCAACAACATGCATCGTATTCCTT-AACCGGAAATCTCAGGTGCATAACTTGGTAATTCAGT---
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>chr2B_230
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---------------------------------------------------------------------GACGGCTAGGG
TAAACTA-TTACCTCCAGACTTCACCGGCAAGCCTGTGGATCTACCTCCCCTCTATCTGCCGCTCCAGCGGCTGGTGGCG
GGGAGGAGAGTCCCAGTGCCTCCACTCCGGCTAGTAGTTTAGGTTAGGA-TATTTTAGTCCTCACAGGTGTGGCATTCGG
ACGGATGGAGCG-CTTCTTCTTCGAGTTTGTCTTCCGGGTTTCGATCCTCCTCAAGTTCGTCCATGTGGACATAGTCAAC
GGAGCTCCGGCGTATATTCCTGTCGTCTCTTTGGAGTGGTGAGGTTAG--GGTG-TTCGTCGTG---------TGGCGAG
ATTTGGTGTCAGATGTTTCAGATCTATTT-AAGGGTTCAACGACGATGATTGCAGCTCCAGAGCGCTGGTCTTTAGGGGC
ACGTGCACGAAGACTTTCCAGTTGTTATCGACAAGGTCAAGACAACTCCTATAGAGGAGCAAGATAGCACCGCATTAGC-
GGCTCGTTCTGGCAGCGATAGTGGTCGTTCGGTGGTCTTGGAATCTCGATGTAATTTTTATTATGTTTGAGGTGCT----
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>chr6B_879
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-----------------------------------------------------------------------TAATTGGAG
TTTTTT-TTCCGCTGTGAGTTTAGTAGACTAC-----TACCGTACAAGCGTGTAGTAT----------TGCTTGTGCGCC
TTGCCCTGCCAGACCTGGATTCGATCGGAGGCGATTACGAACGCCGGGCTGCGCGCCTACCGGGAGGTGCTGCGGCTGGT
GCGCCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAACTTCGTCAACTACCGCCACCTTTCCG
CCGACGACGACCTCGCCGACCTCCTCCGCCGCGCGCATGCCCACTCCGCCTGGGTCCTCTCCAAGGTACCATCACGTCAA
TCAAATGCGGTGCTCCTTCTCACTCTTTGCGTGTTCATCGTACCATCCATTTCATTCGCGGCTCATGGGAATGGAATGCC
AATGGATCGACCTATTCCTGCTACCTATCTCACCGTTCCTAGTTATGTAACGCGTGGCTTGCAGTACTCCATCGACGCCG
CGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGCGAGTGAGTGGATGGCCGAG---------------------CGCGG
CGCGGTGGTGCGTGCACGCAAGGTGTTCGGCTGTATGCCTCTGTAGAGGTTTTTTAAGTTCCCTGCCCGAACAGGGTGAA
CTGCCCTGTTCTGCCTCTGCTGTGTTGTTTTAGAGCTGGGCGCTTTCATGTTTCCAAATGTTCTACAGTAGTGGGAAATA
AGATCAGCATTGTGCTTCTGACTTGGTAATGTTCTGAACTCGGACCGACTAT----------------------------
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---------------------------------------TTGCTCCATTGCTCCGTGTGCCAGTGCAGCCTTCGTGTTGC
CCTCTCTGTTGACTGCCAACAACAGGCATCGCGGTCCTGCAACCTGAAATCT---GTGCATAACTAGGTAATTCAGT---
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>chr2A_1914
TTCACT--------------------------------------------------------------------------
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------------------------------------------------------------------------------AC
ATTGTGCATAGCCTCAAGTAGTCAAAACTTCTCTGGTTACATGTTATAAAGGTATTCTTTGTTGTATGCGGGAACGAAAT
GTAGCTCACATGCTCATCCCAATCCTTAATGAAATGGAGCTTGCATATTCATCCCAATCCTTATTCAAACAGACCTTCTA
AAATAAAAGATCCCTGAAGTAGTAAAGT--GGAAAAATTGATGCTCCAGAAGGGCCTCTAGTTTTGACTCAAATTTGTGC
TTAGCTG-TCAACAATGAAAAAGATGTGAGCATTGCCCTTCATCAACCTCGCATGGCTCATAATAGCAGTACCATGTTTC
TTTCTTTCTATGTTGGAGCATGTGTTTTGTTGTCCCTTCCTCCTGAAAAATTGTCTGATTCAAAATGGAGTTCGGAGTAA
GGATGTAGATACTAATTATC-GAACTCCCATTGAACCATTGCATCAGCATAAAACGTAGAGCAAGGTATGAAGTATATTT
AGTGCAATGATTAATGTC
>chr2A_1914
TTCACT--------------------------------------------------------------------------
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------------------------------------------------------------------------------AC
ATTGTGCATAGCCTCAAGTAGTCAAAACTTCTCTGGTTACATGTTATAAAGGTATTCTTTGTTGTATGCGGGAACGAAAT
GTAGCTCACATGCTCATCCCAATCCTTAATGAAATGGAGCTTGCATATTCATCCCAATCCTTATTCAAACAGACCTTCTA
AAATAAAAGATCCCTGAAGTAGTAAAGT--GGAAAAATTGATGCTCCAGAAGGGCCTCTAGTTTTGACTCAAATTTGTGC
TTAGCTG-TCAACAATGAAAAAGATGTGAGCATTGCCCTTCATCAACCTCGCATGGCTCATAATAGCAGTACCATGTTTC
TTTCTTTCTATGTTGGAGCATGTGTTTTGTTGTCCCTTCCTCCTGAAAAATTGTCTGATTCAAAATGGAGTTCGGAGTAA
GGATGTAGATACTAATTATC-GAACTCCCATTGAACCATTGCATCAGCATAAAACGTAGAGCAAGGTATGAAGTATATTT
AGTGCAATGATTAATGTC
>chr2A_1914
TTCACT--------------------------------------------------------------------------
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------------------------------------------------------------------------------AC
ATTGTGCATAGCCTCAAGTAGTCAAAACTTCTCTGGTTACATGTTATAAAGGTATTCTTGGTTGTATGCGGGAACGAAAT
GTAGCTCACATGCTCATCCCAATCCTTAATGAAATGGAGCTCGCATATTCATCCCAATCCTTATTCAAACAGACCTTCTA
AAATAAAAGATCCCTGAAGTAGTAAAGT--GGAAAAATTGATGCTCCAGAAGGGCCTCTAGTTTTGACTCAAATTTGCGC
TTAGCTG-TCAACAATGAAAAAGATGTGAGCATTGCCCTTCATCAACCTCGCATGGCTCATAATAGCAGTACCATGTTTC
TTTCTTTCTATGTTGGAGCATGTGTTTTGTTGTCCCTTCCTCCTGAAAAATTGTCTGATTCAAAATGGAGTTCGGAGTAA
GGATGTAGATACTAATTATC-GAACTCCCATTGAACCATTGCATCAGCATAAAACGTAGAGCAAGGTATGAAGTATATTT
AGTGCAATGATTAATGTC
>SNPs
--SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
S-----S-S--------S------------------S------------------S---------------S--------
S-----------------------------------------------S--S----------------------------
-------------S----------------------------------S-----------------------S-------
--S--S-S-S-------------S-----------------S-S------S-S----------------S----------
-------------------------------------------------------S-----S---S--------------
------------S--------------------------S---S--------S---------------------------
--------------------------S-----------------------------------------------------
----------------------------------------------------------------------------S---
--------S----S--------------------------SSSSSSS---------------------------------
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--------------------------------------------S------------S----------------------
-------------------------------------S------------------------------------------
------------------------------S-------------------S-----------------------------
------------------------------------------------------------------------------S-
-------------------------------S--S----S-----------------------------S--S-------
-------------------S------------------------------------------------------------
---------------------S-S------------------------------------------------------S-
----------------------------------S---S----------------------S---------------S--
-------------------------------------S-----SS---------S-------S-----------------
S-----S---------S--S---S--------------------------------------------------------
-------------------S-------------S---------S-------------------S--S-S-----------
--SSSSS------------S------------SSSSSSSSSSSSSSSSSSSSSSSSS-------S------S------S-
-----------------------------S---------------------------------------------S----
----------------------------------------------------S--S--S------------------S--
------------------------------------------S-------S--S-SS------------S----S-----
-------S---S------------------------------S-S----------S------------S-S----S--S-
--------S----S--------SS--SSSS----------------------S------------S--------------
-------S---------S---------S--S-------------------S-----------S---S---SS--------
S-------------------S-S---S-----------S----S--S-------S-S-S-S---S-------------S-
------------------SSS---------S----------SS--S-----S-S-S----S-------S-----------
---------S--------
>forward_71
---------------------------------------------------CGACAAAACCACAATGCGGT---------
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>reverse_2040
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---------------------------------------TGTATTTTGGCGAGCGGCTA---------------------
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