>input_sequence_80827
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGGCGAACGCCGGGCTGCGCGCCTACCGGGAGGT
GCTGCGGCTGGTGCGGCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAATTTCGTCAACTACC
GCCACCTATCCGCCGACGACGACCTCGCCGGCCTCCTCCGCCGCGCCCATGCCCACTCCTCCTGGGTCCTCTCCAAGGTA
ACGTCACGTCAACCGAATGCGGTGCTCGTTCTCACTCTCCGCGTGTTCATCGCGCCATCCATTCCATTCGCGGCTCATGG
GAATGGAATGCCAATGGATCGACCTATTCCTGCTACCTATCTCACTGTTCCTGGCTGTGCAACGCGTGGCTTGCAGTACT
CCATCGACGCCGCGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGCGAGCGCGGTCCCGAGTGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr6A_1_TraesCS6A01G136800
CAGCCGGTGGCAGGGGTGATCCCGGTGCCTCCACTCCGGCTAGTAGTTTGGGTTAGGGTTTTTTAAATCCTTGCATGTGT
GGTTCTCGGGCGGATAACGACACTTCTTCTTTGAGTTTGCCTT-CGTTCTTCGATCCTCCCCGAATTCGTCTATCTAGTT
GTAATTACACAGCTCCAACATAGATTTTTGTCATCTCCTTCTGTCGGCGAGGTTATATGGTTTTTCGTCGTGCATGCACG
ATGGCAAGATTTGATGTCAGATATTTCAGATCTATTAAAAGGGTTTAACATCGACGATTGCGGCTCCCGTGTGTTGGTGC
TTAGGGGCATATGCATGAAGACTTTCCGGCTACCAGTGACAAGGTCAAACCGGCTCTGGTAGAGGAGTGGCGACAGTGGC
ACATCAATGGCTCGTTTTGGCGGCGACGGTGGTTGTTAGATGGTCTACAGACCTCAGTATTA---TTTTTATTATGTTTG
AAGTGCTTTATACCTTTTGTGAAATTTTCAGATCCTTTTTGAGAAAAAAAA-TAGTGACTAAGGCCTCTTTTGATTCATA
GGATAGGATTATCGTAGGAATATGAATTTTATAGGAAATGAGATGACATGTATCTCAAATCTCATGAGTAAAAATAGAAA
ACAAGATGTCATTTGGTTGACATCAAAAGAATTTTTTCATTGAATCTAGGCTCATTTTTATTTTCCTATGAAATGTGAAG
GATAGGAATCAATCTTATATAGGAATAGAAATCCATTCCTATGAACCAAAGGGCTCTAAAGGAAAAAATCCTATAAGAAT
TTTATCCTCTAGAATTCTTATGAAATTCCTTCAAACTAAAGGAGGCCTAAGAGGCTCTTGTATTACGGGGCGGAGGGAGT
AGTTAATTGGAGTTTTTCCTTCCACCGTGAGTTTAGCAGACTACTACAGTACCGTACAAGCGTGTAGTACTACTTCCTAG
TGCTTGTGCGCCTTGATCTACCAGGCCTGGATTCGATCGGAGGCGATGGCGAACGCCGGGCTGCGCGCCTACCGGGAGGT
GCTGCGGCTGGTGCGGCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAATTTCGTCAACTACC
GCCACCTATCCGCCGACGACGACCTCGCCGGCCTCCTCCGCCGCGCCCATGCCCACTCCTCCTGGGTCCTCTCCAAGGTA
ACGTCACGTCAACCGAATGCGGTGCTCGTTCTCACTCTCCGCGTGTTCATCGCGCCATCCATTCCATTCGCGGCTCATGG
GAATGGAATGCCAATGGATCGACCTATTCCTGCTACCTATCTCACTGTTCCTGGCTGTGCAACGCGTGGCTTGCAGTACT
CCATCGACGCCGCGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGCGAGCGCGGTCCCGAGTGA-GGGAAGACCGTGGC
AGCAGCCCGCGGCGCGGTGGTGCGTGCACGCAAGGTGTTCGGCTATATGCCTCTGTACT-GGTTTTTAAGTTCCCTGCCC
GAACAGGGTGATGTGCCCTGTTCTACCTCTACTGTGTTGTTTTAGAGCTGGGCGCTTCCATGTTTCCAAATGTTCTACAG
TAGTGGAAAACAAGATCAACATTCTGCTTCTGACTTGGTAATGTTCTGAGCTCGGATCGACTATTTAGAGGCTGTTCGGA
GTCCCTCCGCTCTG-----CAACTCCGCTGCGGAGCGGAGCGGC-------------------------TAAAAGGATGC
TCCGCACGCT-CGCTCTGTAGTGAAGGAGTGGAGGATTGCCGAACACAGCCTTACTACATTGCTCCGTGTTCCAGTGCAG
CCTTCGTGTTGCTCTGTTGACTGCCAACAACATGCATCGTATTCCTT-AACCGGAAATCTCAGGTGCATAACTTGGTAAT
TCAGTTAGAAGGGAAACACTGGAAGAAAGATTTTTTTTTCATTTTATCTTTTGCAAAAGTGAAGGGGAATTTGTTTGAAG
ATATGATTTGCATTAGGAATTAGTAGTACTCTGTTTTTTCAGGCAAGGAATTAGCTGTGTTCTATACATCTTGTATAGGC
AAACCTCACTACAAGACATTAAATTGTTATTTTTCGCACACAGGTGCTTCTACATCATCAAAATTGTTGCAACCGGCAAG
ATATGAGTGAAATCAAGAGACATAAAAAAACAGTCATCAAAGATGGCACTGGCTATTGAAGATGAATAGCCCTCCTTCAA
TGCAGCTATTACCTCCAAGTTATCCGAATTAATTTCAATTTTGTTGCAGCCTGCTATACGTGCCAAGTTCAAACCAAATC
TTATCGCAATGGCTTCTGCCGTGAAAGCATCATAGCAGATATTCAGTTTTTCATTTGCAGCCGCAATGAACTTGCCATTA
TGATCTTGAATGACAGCTCCCACAGAGCCTTCAAGTGTGTCCGCATCAAACCCCGCATC
>chr6D_1
CAGCTGGTGGCAGGGGTGATCCTGGTGCCTCCACTCCGGCTAGTAGTTTAGGTTAGGTTTTTTTTAATCCTCACAGGTGT
GTCTCTCGGGCTGACGTCCACACTTCTTCTTCAAGTTTGCCTTCCGTTCTCCAATCCTCTCTAAATTCGTCTATCTAGCT
GTAATTACAGAGCTCCAAGGTAGATTTTTGTCATCTCCTTCGGTCGGCGAGGTTAT--GGTTTCTCGTCCTGCGTGCACG
ATGGCAAGATTTGATGTCAGTTATTTCAGATCTATTAAAAGGGTTTAGCGTTGACGATTGTGGCTCCAGTGTGTTGGTGC
TTAGGGGCATATGCACGAAGACTTTCCGGCTACCGGTGACAAGGTCAAACCGGCTCTGATAGAGGAGTGGCGACAGTGGC
ACATCAATGGCTCGTTTTGGCAGCGATGGTGGTTGTTAGATGGTCTAGAGACCTCAATGTTA---TTTTTATTATGTTTG
AAGTGCTGTATACCTTTTGCGAAACTTTCAGATCCTTTTTGAGAAAAAAAAATAGTGACTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGAGGCTTTTGTATTACGGGACGGAGGGAGT
AGTTAATTGGAGTTTTTTCTTCCACTGTGAGTTTAGCAGACTACTACAGCACCGTACAAGCGTGTAGTACTACTTCCTAG
TGCTTGTGCGCCTTGCTCTACCAGACCTGGATTCGATCGGAGTCGATGGCGAACGCCGGGCTACGCGCCTACCGGGAGGT
GCTGCGGCTGGTGCGGCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAACTTCGTCAACTACC
GCCACCTTTCTGCCGACGACGACCTCGCCGGCCTCCTCCGCCGTGCACATGACCACTCCGCCTGGGTCCTCTCCAAGGTA
CAATAACGTCAACCGAATGCGGTGCTCCTTCCCACTCTCTGCGTGTTCATCGCACCATCCATTTCATTCGCGGCTCATGG
GAATGGAATGCCAATGGATCGACCTATTCCTGCCAGCTATCTCACTGTTCCTGGTTGTGTAACGCGTGGCTTGCAGTACT
CCATCGACGCGGCGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGTGAGGGCGGTGCCGAGTGAGGGGAAGATCGTGGC
AGCAGCCCGTGGCGCGGTGGTGCGTGCACGCAAGGTGTTCGGCTATATGACTCTGAGGT-GTTTTTCAAGTTCCATGCCC
GAACAGGGTGAATTGCCCAGTTCTACCTGTATTGTTTTGTTTTAGAGCTGGGCGCTTTCATGTTTCCAAATGTTCTACAG
TAGTGGGAAATAAGATCAACATTCTGCTTCTAACTTGGTAATGTTTTGAACTCGGGCCGACTATTTAGAGGCTGTACGTA
ATCCCTCCGCTCTGCAGCTCAACTCCGCTGCAGAGCGGAGCGGCATGCAGTTGTATTTTGGCGAGCGGCTAAAAGGGTGC
TCCACACGCTCCGCTCTGTAGTGAAGGAGTGGAGGATTGCCAAACACAGCCTTACTACATTGCTCCGTGTTCCAGTGCAG
CCTTCGTATTGCTCTGTTGACTGCCAACAACAGGCATCGTGGTCCTGCAACCTGAAATCTTAGCTGGATAACTTGGTAAT
TCAGT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>chr6B_309
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGTGTTGGTTC
TTAGGGGCATATGTAGACAGACTTTCCGGCTACCGGTTACAAAGTCAAACCGGCTCCGGTAGAGGAGTGGCGACAGTGGC
ACATCGACAGCTCATTTTGCCGGCGACGGTGGTTGTTAGATGGTCTACATACATCCACGTATTTTTTATTACTATGTTTG
AAGTGATTTATACCTTTTGTGAACCTTGG-GATGCTTTTCGAGAGAAAAAAGAAATGTTGCACTCTTGC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TAATTGGAGTTTTTT-TTCCGCTGTGAGTTTAGTAGACTACT-----ACCGTACAAGCGTGTAGTAT----------
TGCTTGTGCGCCTTGCCCTGCCAGACCTGGATTCGATCGGAGGCGATTACGAACGCCGGGCTGCGCGCCTACCGGGAGGT
GCTGCGGCTGGTGCGCCGGCTGCCTGCCGACGCGCGGCCCTACTACGCGAAGTACGCCCGCGAGAACTTCGTCAACTACC
GCCACCTTTCCGCCGACGACGACCTCGCCGACCTCCTCCGCCGCGCGCATGCCCACTCCGCCTGGGTCCTCTCCAAGGTA
CCATCACGTCAATCAAATGCGGTGCTCCTTCTCACTCTTTGCGTGTTCATCGTACCATCCATTTCATTCGCGGCTCATGG
GAATGGAATGCCAATGGATCGACCTATTCCTGCTACCTATCTCACCGTTCCTAGTTATGTAACGCGTGGCTTGCAGTACT
CCATCGACGCCGCGGAGGCGGCAGGGCGGCTCAAGGAGATCTGCGGCGAGTGAGTGGATGGCCGAG--------------
-------CGCGGCGCGGTGGTGCGTGCACGCAAGGTGTTCGGCTGTATGCCTCTGTAGAGGTTTTTTAAGTTCCCTGCCC
GAACAGGGTGAACTGCCCTGTTCTGCCTCTGCTGTGTTGTTTTAGAGCTGGGCGCTTTCATGTTTCCAAATGTTCTACAG
TAGTGGGAAATAAGATCAGCATTGTGCTTCTGACTTGGTAATGTTCTGAACTCGGACCGACTATTT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>SNPs
----S-----------------S--------------------------S-------S------S------SS--S----
-SS--------S--SSS-S------------SS-----------------S-S------S-SS---------------S-
---------S--------SS---------------------S--------------SS-----S-----S---S------
--------------------S--------------------------S-S-S--------S------S------------
---------------S------------------S---------------------------------------------
--------------------------------------------------------S-S---------------------
------------------------S-------------------------------------SS-S-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------------S----------
-----------------S-------S-----------------------S------------------------------
---------------S--------S-------------------------------------------------------
------------------------------------------------------------------S-------------
-------S--------------------------------------S------------S--------------------
S-S------------------------S-----------S-------------S---------S----------------
------------------------------------------------------S----S--------------------
--------------------------------------------------S-----S----------------S------
---------------------------------------------------------S---S------------------
-----------SS--------------------------------------------S----------------------
------S---S--------------------------------------S------S------------------S--S-
S------------------------------S--------------------------------------------S---
---S-------------------------------------S--------------------------------------
-------S------------------------S-------SS----S-----S-------S--S--S-------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_985
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTGCGCCTTGATCTACCAGG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>reverse_2424
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AGAGCCTTCAAGTGTGTCCG----------------
