>input_sequence_80825
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--------------------------------------------------ATGGCAACCCAGCCACACCAATCGTCCAAG
AAATTCCTACAGCGCGAGGCCCCGCCGGCGAAGCGGAAGATGGGGCCGGAGCAGAAGACGAAGAAGGCCGGGGCGGCAGC
GCCGGCGGGGGCGGAGGCCTTCACGGCGCTCGAGCTCGACGTGGCCGAGCAGCTCATCCGCCTCAGCGA---CAGCGCGT
CCTCGGGCGGGTCCTTCTCCTGCCTGCGTTCCGTGGACACCCCTCCGGCGCCGCCGGCTAAGGGCGCCATAATTCCTGGC
GGTTGCGTGGACTGGGACGAAGATGAGGACGACGAGGTGGCCGGAAGGCAGCGCAGGGTGAAGCGCTACCGCCTGATAAG
CGAGATCTATGCCGCGACGGAGCCAATTGGAGAGCGCAGCGGCAGCAGCCGGAAGATCAAGAAGAAGGAATAG-------
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>chr5B_1_TraesCS5B01G333600
AGCAGAGTATTTGCCATGCGTTTTGGGGGATATTCCATGGTTGCAGCACGAAGAATTGCCAACCTAGAAAAGAAAATTAT
GAAAATTGCCATGCTGGCCGCAGGAAATTGCCATGCTATATCAACGAAAAACGGGTGAGAATTGCCATGCCCTAAAAG-A
AGAAATTGCCATCCCAGAATGTGCTCCGCTTAGATTGTGATCAGTTAACCAATTACTGTTGTCATCTCATAGTTCGCTCA
AAGGTTGCGTTCGCTACTGACACTTTAGAATTCGGGCTTGGAATCCGACGTGCATGAGGGCGTTTACTGAGAATCCTTAG
AAATTTAACATTATATTTCTAACATTTGGGTTAAGATATTGCTTGGAGTATTTG-TTCCTAAATAAATATTTTATGGGCT
GAAAAACCACACATTTAACCGGTAAACCAGCAAACCAATCAGTAAAAACCTGAATCGACGAACCTCATTGGTTTGATCAC
CGGTCCGAATTTTTAAATCCATGTCAACCTACTCGTGTGAATATCCAATGATAACAATGTGGATGAAACTAAGCAGAAAC
AAGTTAACCCTAGATCGTGATAAAATGTAATGATAATCACGAAATTTGTAGAGCTGCGTGTGAGGACCTCCAGCCGAGCG
TGCCGACAGTCGTCTGATCTGGCGGCGTGCTAGCCAGAGCTGATTGGACGCATTACACGTTGTATCCATCCAAAGCTCAC
AATGTGTCACGCGTGACGCGTCCACACGACCACGCGCACATTTACACTAGATTACACAAATGTCAAATCTTGGTCAGGCC
AAATCAATTCCAGGCTATACGAACATTTATGCA--------TAGCCACCAAAGGAAATAATTAAACATATCCAAAAAACC
AAGGGAGAAATAGAGAATAAAACCCAAGTCTTCCTCTCGAGAGCAAGAGGAAAGGACAAGGAATATTAACTAGCAACCAA
AGAAAGAGTAGACGGGAGAGAGGAGGCGAAATTAGCCAACGCGCGCGTCCATGGCAACCCAGCCACACCAATCGTCCAAG
AAATTCCTACAGCGCGAGGCCCCGCCGGCGAAGCGGAAGATGGGGCCGGAGCAGAAGACGAAGAAGGCCGGGGCGGCAGC
GCCGGCGGGGGCGGAGGCCTTCACGGCGCTCGAGCTCGACGTGGCCGAGCAGCTCATCCGCCTCAGCGA---CAGCGCGT
CCTCGGGCGGGTCCTTCTCCTGCCTGCGTTCCGTGGACACCCCTCCGGCGCCGCCGGCTAAGGGCGCCATAATTCCTGGC
GGTTGCGTGGACTGGGACGAAGATGAGGACGACGAGGTGGCCGGAAGGCAGCGCAGGGTGAAGCGCTACCGCCTGATAAG
CGAGATCTATGCCGCGACGGAGCCAATTGGAGAGCGCAGCGGCAGCAGCCGGAAGATCAAGAAGAAGGAATAGACGAAGA
GAGATGAGAGGGGAGAGGGGCCAACCTTGTTGTAATTCAAGTGATTGCTAGGGGGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCTTGCTGTAAAAGCTTC
ATCCTTGCAATAAGACTTG----TTGGCTGGAGCTGAATCCATCCATGGCGGCTTCCGAATTCTTAACTGAATTTATTTT
GTTCTACTGTTGCTAGCAGGCTTGGCTGGATCTCGGCCGATCGACCGATGGACGGCCTTTGCAAATGGATGGTCTCCGCG
GCGGAGAGGATCAGATCACCTCCGGCCAGGGATTCGGATTGGTAGCTCGCGACTCTGCGCCTGCGGTCGATCAATT----
--CCTGCCTGCATGCAATTTTTCAAATTAACTATTCCCTGTCGCATGGCGAGTTGCGATTCACTGAAGGATCGATCGATC
GATTCGTGAAATATGGTGCTTTGTTTATCGGATTTGAGCAGCGACGCGGTGCACTGTTGTCTGCGCTGGTTTGGGAGTCC
TATTTCTACCAGAAATGCTTGCTCTGCGTGTGGTAGAACTGTTGATCAGTAGATATGGCCCTGCAGACCGGACCGTCGGA
GCCGCCGGCAGTTGCAATCTCTTGTTCTCCGGTGGTTGTACAACTC-TAGTTCGAATGCTCGATATAACACCTGCCTCTT
CTCCTCATACTTGTTTGGTCCATTTAAGCGAGTCTAATTTCTTG
>chr5D_1
AGCAGAGTATTTGCCATGCGTTTTGGGGGATATTCCATGATTGCAGCACGAAGAATTGCCAACCTAGAAAAGAAAATTAT
GAAAATTGCCATGCTGGCCGCAGGAAATTGCCATGCTATATCAACGAAAAACGGGTGAGAATTGTCGTGCCCTAAAAATC
AGAAATTGCCATCCCAGAATGTGTT-CGCTTAGATTGTGATCAGTTAACCAATTACTGTTGTCATCTCATAGTTCGCTCA
AAGGTTGCGTTCGCTACTGACAATTTAGAATTCAGGCGTGGAATCCGACCTGCATGAGGGCGTTCACTGAGAATCCTTAC
AAATTTAACATCATATTTCTAACATTTGGGTTAAGATATTGCTTGGAGTATTTTTTTCCTAAATACATATTTTATGGGTT
GAAAAGCCACACATTGAACCGGTAAACCAGCAGACCAATCAGTAAAAACCTGAATCGACGAAACTCATTGGTTTGATCAC
CGGTTCAAATTTTTAAATCCATGTCAACCTACTCGTGTGAATATCCAACCATAACAATGTGTATGAAACTAAGCAGAAAC
AAGTTAACCCTAGATCATGACAAAATGTAATGATAATCACGAAATTTGTAGAGCTGCGCGTGAGGACCTCCAGCCGAGCG
TGCCGATAGTCGTCTGATCTGGTGACGTGCTAGACATAGCTGATTGGACGCACTACACGTTGTATCCACCCAAAGCTCAC
GATGTGTCACGCGTGACGCGTCCACACGACCACGCGCACATTTACACTAGATTACACAGATGTCAATTCTTGGTCAGGCC
AAATCAATTCCAGGCTATACGAGCATTTATGCA--------TAGCCACCAAAGGAAATAATTAAATATATCCAAAAAACC
AAGGGAGAAATAGAGAATAAAACCCAAGTCTTCCTCTCGAGAGCAAGAGGAAAGGACAAGGAATATTAACTAGCAACCAA
AGAAAGAGTAGACGAGGGAGAGGAGGCGAAATTAGCCAACGCGCGCGTCCATGGCTAGCCAGCCACACCAATCGTCCAAG
AAATTCCTACAACGCGAGGCCGCGCCGGCGAAGCGGAAGATGGGGCCGGAGCAGAAGACGAAGAAGGCCGGGGCGGCAGC
GCCGGCGGGGGCGGAGGCCTTCACGGCGCTCGAGCTCGACGTGGCCGAGCAGCTCATCCGCCTCAGCGAGAGCAGCGCGT
CCTCGGGCGGGTCCTTCTCCTGCCTGCGTTCCGTGGACACCCCGCCGGCGCCGCCGGCTAAGGGCGCCATAATTCCTGGC
GGTTGCGTGGACTGGGAGGAAGATGAGGACGACGAGGTGGCCGGAAGGCAGCGGAGGGTGAAGCGCTACCGCCTGATAAG
CGAGATCTACGCCGCGACGGAGCCAATTGGAGAGCGCAGCGGCAGCAGCCGGAAG---AACAAGAAGGAATAGATGAGGA
GAGATGAGAGGGGAGAGGGGCCAACCATCTTGTAATTCAAGTGATTGCTAGGGGGTAGCCTGTAGTTCG----AGCAGTC
CTCTCCTTGCTCTCGCCGGGAGGAATCGCTATCACTTT------------------------------------------
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-----------------------------------------------------------CGATCTAGCTGTAAAAGCTTC
ATCCTTGCAATAAGACTTGCTTGTTGGTTGGAGCTGAATCCATCCATGGCGGCTTGCAAATTCTTAACTGAATTTATTTT
GTTCCACAGTTGCTAGCTGGCTTGGCTGGATCTCGGCCGATCGACCGATGGACGGCCTTTGCAGATGGATGGTCTCCGCG
GCGGAGAGGATCAGATCAGGCTTCCTCCTTCGATTTCG-TGGTAGCTCGCGACTCGGCGCCTGCGGTCGATCAAGATCAA
TCCCTGCCTGCATGCAATTTTTGAAATTAACTATTCCCTGTCGCATGACGAGCTGCGATTCACTGAAAGATCGATCGATT
GATTCGTGAAATTTGGTGCTTTGTTTATCGGATTTGGGCGCCGACGAGGTGCACTGCTGTCTGCGCTGGTTTTGGAGTCC
TATTTCTAGTAGAAATGTTTACTCTGCTTGTGGTAGAACTGTTGATCAGTAGATATGGCTCTGCAGGGTGCAGGC-CGGA
GCAGCCGGCGGTTGCAATGCCTTGTTCTCCGGCGGTCGTGCAACTCATAGTTCGACTGTTCGGTATAACACCTGCCTCTT
ATCTTCATACTGGTTTGGTCGATTTAGGCGAGTCCAATTTGCTT
>chr5A_8
TAA-------TTGCCATGCGTTTTGGGGGATATTCCATGATTGCAGCATGAAGAATTGCCTACCTGGAAAAGAAAATGAT
GAAAATTGCCATGCTGGCCGCAGGAAATTGCCATGCTATATCAACGAAAAACTGGTGAGAATTGTGCTGCCCTAAAAA-C
AGAAATTGCCATCCCCAAATGTGTT-CGCTTAGATTGTGATCAGTTAACCAATTATTGTTGTCATCTCGCAGTTCGCTCA
AAGGTTGCATGCGCTACGAAGACATTAGAATTCGTGCGTCAAATTCGACGTGCATGAGGGCGTTCACTGAGAATCCTTAC
AAATTTAACATCAGATTTCTAACATTTGGGTTAAGATGTTGCTTGGAGTATTTG-TTGCTAAATACATATTTTAGGGGCT
AAAAAACCACACATTGAACTGGTAAACCAGCAGACCAATCAGTAAAAACCTGACTCGACAAACCTCATTGGTTTGATCAC
TAGTCCGAATTTTTAAATCCATGTCAACCTACTCGTGTGAATATCCAACGATAACAATGTGTATGAAACTAACCAGAAAC
AAGTTAATCCTAGATTATGACAAAATGTACTGATAATCACGGATTTTGTAGAGCCGTGTG---GGACCTCCAGCCGAGCG
TGCCGATAGTGGTCTGATCTGACGACGTGCTAG--ATAGCCGATTGGACGCGCTACACGCTGTATTCACCCAAAACTCAC
GACATGTCACACGTGACGCGTCCACACGAAAAAGCGCACATTTACACTAGATTACGCAGATGTCAAATCTTGGTCAGGCC
AAATCAATTCCAGGCTATAGGAACATTTATGCATAGCCAGTTAGCCACCCATGGAAATAATTAAACGTATCAAAAAAACA
AGGGAG--AATAGAGAATAAAACCCAAGTCTTCCTCTCAAGAGCAAGAGGAAAGGACAAGGAATATTAACTAGCAACCAA
AGAAAGAGTAGACGAGAGAGAGGAGGCGAAATTAGCCAACGCGCGCGTCCATGGCAACCCAGCCACACCAATCGTCCAAG
AAATTCCTACAGTGCGAGGCCCCCCCGGCGAAACGGAAGATGGGGCCGGAGCAGAAGACGAAGAAGGCCGGGGCGCCAGC
ACTGGCGGGGAAGGAGGCTTTCACGGCGCTCGAGCTCGACGTGGCCGAGCAGCTCATCCGCCTCAGCGAGAGCAGCGCGT
CCTCGGGCGGGTCCTTCTCCTACCTCCGTTCCGTGGACACCCCGACGGCGCCGCCGGCTAAGGGCGCCATAATTCCTGGC
GGTTGCGTGGACTGGGAGGAAGATGAGGACGACGAGGTGGCCGGAAGGCAACGGAGGGTGAAGCGCTACCGCCTGATAAG
CGAGATCTACGCCGCGACGGAGCCAATTGGAGAGCGCAGCGGCAGCAGCCGGAC---------GAAGGAATAGATGAGGA
GAAATGAGAGGGGAGAGGGACCAACCATCTTGTAATTCAAGTGATTGCTAGGGGGTAGCCTGTAGTTCGAGCTAGCAGTC
CTCTCCTTCCTCTCGCCGGGAGGAATCGCTATCACTAT------------------------------------------
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-----------------------------------------------------------CGATCTTGCTGTAAAAGTTTC
ATCCTTGCAATAAGAT----TTGTTGGCTGGAGCTGAATCCATCCACGTCGGCTTCCGAATTCTTAACTGAATTTATTTT
GTTCCACAGTTGCTAGCTGGCTTGGCTGGATCTCGGCCGATCGACCGATGGACGGCCTTTGCAGATGGATGATCTCCGCG
GCGGAGAGGATCCGATCAGGCTTCCTCCTTCGATTTCG-TGGTAGCTTGCGACTCGGCGCCTGCGGTCGAT------CAA
TCCCTGCCTGCATGCAATTTTTGAAATTAACTATTCCTTGTCCCATGAGGAGCTGCGGTTCACTGAAAGATCGATCGATT
GATTCGTGAAATTTGGTGCTTTGTTTATCGGATTTGGGCGGCGACGAGGTGCACTGCTGTCTGCGCTGGTTTGGGAGTCC
TATTTCTAGCAGAAATGTTTACTCTGCGTGTGGTAGAACTGTTGATCAGTAGATTTGGCTCTGCAGGGTGCAGGC-CGGA
GCAGCCGGCGGTTGCAATGTCTTGTTCTCCGGTGGTCGCGCAACTCATAGTTCGACTGTTCGGTATAACACCTGCCTCTT
ATCTTCATACTGGTTTGGTCGATTTAGGCGAGTCCAATTTC---
>SNPs
---------------------------------------S----------------------------------------
----------------------------------------------------------------S-S----------S-S
-----------------------S-S------------------------------------------------------
-------------------------------------S--------------------------S--------------S
-----------S-----------------------------------------------------S--------------
---------------S----------------S-----------------------------------------------
------------------------------------------------S------------S------------------
----------------S---S-----------------------------------------------------------
------S-----------------S--------S--S---------------S---------------S-----------
S---------------------------------------------------------S---------------------
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--------------S-----------------------------------------------------------------
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-------------------------------------------S------------------------------------
-----------------S-----------------------------------S--------------------------
---------S---------------------------------------------SSS--S-------------S--S--
--------------------------S-S---------------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
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----S--S---------S---------------------------------------------S----------------
------------------SSSSSSSS-SSSSSS-SSSSS----------------S------------------SS----
----------------------S------------------------S----S--------------S-----------S
------------S-----------------------S--S------S---------S-----------------------
--------S--------S--S--------------------------------------S------SSS-S-SSSS----
--S------S--------S-----------------S--S---------------S--S---S-----------------
S--S-------S--------S-----S-------S------S-S
>forward_186
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------TGCCATCCCAGAATGTGCTC------------------------------------------------------
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>reverse_1298
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-----------------CGAAGATGAGGACGACGAGG-------------------------------------------
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>forward_693
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---------------------------------CCAGAGCTGATTGGACGCAT---------------------------
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>reverse_2261
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--------------------GCTCTGCGTGTGGTAGAACT----------------------------------------
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