>input_sequence_80824
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--------------------------------------------------------------------------ATGAGG
TCGAGCATGCAAGAAGGGATGACAAGCAGTTTAGCTCTTGGATCCTCTCGAG---------------CCGAGGCGTCCTT
CAGGGTGTACTACAGCCTCGGCGCCGGCGCCGTGCCGTTCGTCTGGGAGACCAAGCCCGGCACGCCCAGGCGCACCATCG
ACCCCGTCAT---CGCCGCCAGCGACGCGCTGCCGCCAATCACGCCGCCGCCACTGTACCAGTCCAAGACCATGAAGAAA
T------GCGCAAGGAAGTCATCTTCTTGCTGGCCTCCTCCGCTGATGATGAGCTGGCTAAACATCAGGAGGCGCCACCG
TCGTCGTGCAGTCGCGACAACAAGCCTGCACCAGACCGCGGCGTCGAAGATCAACGGCTACGGCGGCGGCGTGCCATCCT
TGGGTGCTTCTGAGCCTAGCAT------GGACCGTTGGAACTAG------------------------------------
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>chr5B_1_TraesCS5B01G041500
GGAGCAAAAGGTAGAGCATCAAGTGGGAGAACCCGATTTGGGCACTAGGGTGGACGAAGAGAAGTCCGGCCATGCAGACT
TGCTACAAATTATCGCCAGGCGATGGAACAAACTACTCTTTCCACGGGTTTGGTAAGAGCACGCCATCTCCTGCACATT-
---------------------------------TCCAACACTGTGTTGCAAAAGACAAACTTTACCA-------------
-------------------------------CCACTTACAGGTACTCCCTTCGTTTCTTTTTAGTCTGCATATAAAATTT
GATCAAAATCAAACTTTGTTAACTTTGACTAAGTTTATAGAAAAGAATATCAAGATTCAAAATATGAAATCAATATTGTT
AGATGCATCATGAAATTAATTTTCATACCGTATAGCTTTAGTATTGTGAATGTTGATATTTTTTATACAAAGTTTGACTT
TGACCAAATCTTATATGCAGACTAAAAAGAAACGGAAGGAGTACGTGGATAGATTGTTACAGGTTCAAC---TCATGTGT
TTGCACCTTCTCTAAGTTTTCCCACAAACAGATCCACCTACTGA-CCTACAGTTTTCACACGTATACGTGTCAGTGTATG
GACGGCTTCCCTATCCAAGGCAGATCATATAACGTAGATAATGG--------TTAAAGACAGACACCATGCACATTGCAA
GCT--TCCGCCGCGAGTCCGCCAACACATCTTCACCTTTAGCTTTCCATTTCATTTAGTATTAGAGAGTCTAATGACACA
TGACAACTCCATGCTAGGATAGCCAGTCCATGTTTTCGATAAAAGAATATTTTTATTGCAACGCACTATTGAGATGACAC
TGCATAACTATAGTTGATTGTCCTCCCTCACCAGAACACACGTAGGAGTAGTATTCTTCAACCTCAAGCCGACCCAGCCG
AAAAGAAGAAGCAGGCAGACTATATATGCATGCA------CTACTGCTCACTCACAAACCCCACCAATTGTGCC---CGT
GCGTGTTTTGCCACCCAAAC-------------TTTTGCAGTCTACTTGGCAGATCCTTGTCCTCCTTAATTTCATGAGG
TCGAGCATGCAAGAAGGGATGACAAGCAGTTTAGCTCTTGGATCCTCTCGAG---------------CCGAGGCGTCCTT
CAGGGTGTACTACAGCCTCGGCGCCGGCGCCGTGCCGTTCGTCTGGGAGACCAAGCCCGGCACGCCCAGGCGCACCATCG
ACCCCGTCAT---CGCCGCCAGCGACGCGCTGCCGCCAATCACGCCGCCGCCACTGTACCAGTCCAAGACCATGAAGAAA
T------GCGCAAGGAAGTCATCTTCTTGCTGGCCTCCTCCGCTGATGATGAGCTGGCTAAACATCAGGAGGCGCCACCG
TCGTCGTGCAGTCGCGACAACAAGCCTGCACCAGACCGCGGCGTCGAAGATCAACGGCTACGGCGGCGGCGTGCCATCCT
TGGGTGCTTCTGAGCCTAGCAT------GGACCGTTGGAACTAGTGTCTGTACGCCTAGTTAAAAGGTCGATTCACCGGC
TAGCTGCTGCACGGGCCCCTTTCCCGTGTTGTTTGACTATATTTTACTCCTCCATCCCAAAATAAGTGTCTTGAGCTTAG
TACAAATTTGTACTAGAGCTAATACAAAGTTAAGACACTTATTCTGGGATGGAGGGAGTATCTTTTACGGTTTTGTTTGA
GTATAGTTTGAGTGGTACATATATATTGTGGTGTGTGTGCTGGGCCTTTAATTTTCATTTCTGTGGTTAAATTC------
-----------------------------------------------------------------------TGTGTGATT
TTCTGATATACAGATTTTATTGAAGTATTTGGCTGTTTTGACTTTGGGGGATCAATAATTGGGCATACATA---------
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------------TATCCCTATTGCCTTTTTCCTGCATGATTGTGTTTA---ATCATACTCTGGGGAAGAAATGGGCTTAG
CATAACAAGATATACTG-----AAGATAAATTTAAAAACCGGAAGGAGTATGACAGGAC-AAAGTCAGAAGGAGGATGGC
--AGAAAGCTACAGAAGCACCTACCTCTCATGTAGTTTTCCCATTGCGCTACCTAAGCCAAGATACTTTTGGAGTTTAAG
AAATGTGATAAAAACTCTCATTTGGTTCAGATGTTGGTTTTAAAGCCATA-AAGACACGTCTGGTTTTGGCTTAATTTCA
AGCCATAATCACAGTAGCATGCAGCTGAACGAAACAAAGTTGTTATTCTTGATATTGCAACATGTAGAATTACCCAAATT
ATTACTGCAGATCAGAT---GAATGAAATTTGGAAGCATATAATGGAGACTGC--GTTTGATAGCATTGTAAACTTTGAT
AGGTGTAAGTGTACTACCCTCGTTAGAGGGCCACGGTTTATATATTGATTGGACGGGGCTTATCCCGTAGACCGCCGGGA
TGATGAAGATGGACTCCGGTCATGATTTCCCCTCTCCGGCAGGGTGCCGAAATAGGCTCCAGATAGTATTTCAAAGGTAC
AGAGGCTTGCGGCGGCAAAGTTGATGTTCTAGGGTTATT
>chr1D_85
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----ACAAATTATCGCCGGGGGATGGAACAAACTACTCTTTCCACGGGTTTGGTAAGAGCACCCCATCTCCTGCACATAA
AGCAAACAAGCCAATGCTGATGGGTGATGGCTATCCAACACTGTGCTGCAGAAGAAAAACTTTACCAAAAAGGAGGCGTT
ACAGAAGATCAAAGTGATATAGTACGTACTTCCACTTACAGGTAT-----------------------------------
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--------------------------------------------GTGGATAGGTTGTTTCAGGTTCAACAAATCGTGTGT
TTGCACCTTCTCTAAGTTTTCGCACAAACAGACCCACCTACTGA-CCTACAGTTTTTACACGCATACGTGTCGATGTATA
GACGGCTTCCCTATCCAAGGCAGAGCATATAACGTAGATGATGGTTAAAGTCTTGAAGACAGACACCATGCAAATTGCAA
GCT--TCCAACGCAC--------------CTTCACCTTTAGCTTTCCATTTCATTTAGTATTACAGAGCCTAATGACACA
TGACAACTCCATGCTGGGATAGCCAATCCATGCTCTCGACAAAAGAATATTTTTATTGCAACGCACTGTTGAGATGACAC
TATGTAACTACAGTTGATTGTCCTCCCTCGCCAGAACACACGTAG---CAGTATTCTTCAACCTCAAGCCGACCCGGCCG
GCAAGAAGCGGA---CGGACTATATATGCATGCA------CTACTGCTCACTCACAAACCCCACCAATTGTGTC---CGT
GCGTGTTTTGCCACGCAAAC-------------TTTTGCAGTCTACTTGGCAGATCCTTGTCCTCCTTAATTTCATGAGC
TCGAGCATGCAAGAAGGGATGACAAGCAGTTTAGCTCAGGGATCCTCTCGAG---------------CCGAGGCGTCCTT
CAGGGTGTACTACAGCATCGGCGCCGGCACCGTGCCGTTCGTCTGGGAGACCAAGCCCGGCACGCCCAGGCGCACCATCG
ACCCCGTAGTCGCCGCGGCCAACGACGCGCCGCCGCCAATCACGCCGCCGCCATTGTACCAGTCCAAGACCATGAAGAGG
TGCACAAGCACAAGGAAGTCATCTTCTTGCTGGCCTCCCCG---GATGACGAGCTGGCTGAACATCAGGAC---CCGCCG
TCGTGGTCCAATCGCGACACCCGGCTTCCACCAGACCGCGGTGTCGATGATCAACGGCTACAGCGGCGGCGTGCCATCCT
TGGGAGCTTCTGAGCCCGGCATCGGCATGGACCGTTGGAACTAGTGTACGTAGGCCTCGTTAAAAGGTCGATTGACGGGC
T----GCTGCACCGGCCCATTTCTGGTGTTGTTTGAGTACAGTTTTT---------------------------------
--------------------------------------------------------------TTTTAGGGTTTTGTTTGA
GTATAGTTTGAGTGGTACATATATACTGTGGTGTTTGTGCTGGGCCTTTAATTTTAATTTCTGTGGTTAAATTC------
-----------------------------------------------------------------------TATGTTATT
TTCGGATATACAGATTTTATTGAAGTATTTGGCTGTTTTGACTTTGGGGGATCAATACTTGGGCATACATA---------
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------------TATCCCTATCGCCTTTTTCCTGCATGACTGTGTCTAATT---ATGCTCCGGGGAAGAAGTGGGTATAG
CATAACAAGATATGCTTTGTAAAAGATAAACTTAAAAACCGGAAGGACTGTGACAGGAC-AAAGTCAGAATGAGGATGGT
AGAGAAAGCTACTGAAGCACCTACCTCTGATGTAGTTTTCCCATTGCACTACCGAAGCCAAGATGATTTTGGAGTTTAAG
AAGCGTGAACGGAACTGCTATTTGGTTCAGATTTTGGTTTTTAAGCCATAAAAGACACGTCTGGTTTTGGCTTAATTTCA
AGCTGTAATCAGC--AGCATGCAGCTGAATGAAGCAA-GCTGTTATTCTTGAAACTGCAACTTGCAGAATTACCCAAATT
ATTAGTGCAGATCAGAT---GTATGAAATTCAGAAGCATGTAATGGACACTGCATGTTTGGTAGCAT-------------
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>chr1A_459
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--------------------------------------------------------TTACAAGTTCAAC---TCGTGTGT
TTGCACCTTCTCTAAGTTTTCGCACAAACAGACCCACCTACCGACCCTACAGTTTTCACACGCATACGTGTCGATGTACC
GACGGCTTCCCTACTCAAGGCAGATCATAG--CGTACAAAATGGTTAAAGAGTAG-AGACAGACACCATGCAGATTGCAA
GCTATTCCGCCGCGAGGACGCCAACGCATCTTCAACTTTAGCCTTCCATTTCATTTAGTATTACAGAG------------
--ACAACTCCATGCTAGGATAGCCAATCCATGCCCTCGAGAAAAGAATATTTCTATCGCAACGCACTGTTGAGATGACAC
TACATAACTACAGTTGATTGTCCTCCCTCACCAGAACACACGTACTACCAGTATTCTTCAACCTCAAGCCGACCCGGCCG
AGACAAGAA--A---CGGACTATATATTCATGCGCTAGCGCTACTGCTCACTCACAAACACCACCAATTGTGTAGTACGT
GCGTGTTTTGCCACGCAAACGCAGTACGTACACTTTTGCCGTCTACTTGGCAGATCTTCGCCCTCCTT----TCATGAGC
TCGAGTATGCAGGAAGGGATGACAAGCAGTTTAGCTCAAGGATCCTCTCGAGGGAGCGTCGTGGCCGCCGGGGCGTCCTT
CAGGGTGTACTACAGCCTCGGCGCCGGCACCGTGCCGTTCGTCTGGGAGACCAAGCCCGGCACGCCCAAGCGCCCCATCG
ACCATGTCGC---TGGCACCGACGACGCGCTACCGCCGATCACACCACCGCCGTTGTACCAGTCCAAGACCATGAGGAGG
TGCCCGAGCACAACGAAGTCATCTTCTTGCTGGCCTCCCCG---GATGACGAGCTGGCTAAACATCAGGAC---CCGACG
TCGTCGTCCAATCGCGACACCCGGCTTCCACCAGACCGCGGCGTCGATGATCAACGGCTACGGTAGCGGCGTGCCATCCT
TGGGTGCTTCTGAGCCCGGCAT------GGACAATTAGA-----TGTACGTACGCCTAGTTAAAAGGTCGATTGACTGGC
T----GCTGCACCGGCCCCTTTCCGGTGTTGTTTGAGTATAGTTTTT---------------------------------
--------------------------------------------------------------TTC-AGGGTTTTGTTTTA
GTATAGTTTGAGTGGTACATATGTATTGTGGTGTTTGTGCTGGGCCTTTAATTTTCATTTCTGTGGTTTAATTCTACTCG
CTCTGTCCCATAATATAAGAACGTTTTTACAATAGTGTCAAAAATGATTTTATATTATGGGACGGAGGAAGTATGTTATT
TTTCGATATACAGATTTTATTGAAGTACTT-GCTGTTTTGACTTTGGGGGATCAATACTTGGCATACATATATCCCTATG
GGGAAATTTTGTTTTTGCCACTCTAGATTTTGCCAATTTTCCTTCTGCCACTGGCTACTCTAGATTTTGACATTTCACTT
TTGCCACTCTTAGTTTTTGATTATTATCACAATTGCCATTCTGGTGGAAAAAGCAAAATTTTCAGAGTGGCAATTGTGAT
ACATTTCAAAAACTAAGAGTGGCAAAAATGAAATAAAATTATTTAGCTTTTGCCACAGAATGGTAATTGTGATAATTGTC
AAAAGCTATGTGTGGCAAAAGTGAAATGTCAAAATCTAGAATGGCATAAGGAAAATTGACAAAATCTAGAATGGCAAAAA
CAAAATTTTCCCTATCCCTATCGCCTTTTTCCTGCATGATTGTGTCCAGTCATCATGCTCCGGGGAAGAAGTGGGTATAG
CATAACAAGATACACTTTGTAAAATATAAATTTGAAAACTGGAAGGAGTATGACAGGACAAAAGTCAGGAGGAGGATGGT
--AGAAAGCTACTGAAGCACCTACCTCTGATGTAGTTTTCCAATTGCACTACCGAAGCCAAGATGCTTTTGGAGTTTAAG
AAGCGTGAACGAAACTGCTATTTGGTTCAGATTTTGGTTTCTAAGCCATAAAAGAAACGTCTGAATTTGGCCTAATTTCA
AGCCATAATCACAGTAGCATGCAGCTGAACGAAA-AAAGCTGTTATTCTTGATATTGCAACTTGCAGAATTACCCAAATT
ATTACTGCAGATCAGATGTAGTATGAAATTCAGAAGCATATAATGGACACTACATGTTGGATAGCAT-------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------------S--S-----------------------------------------S---------------S-
---------------------------------------------S----S----S------------------------
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------------S-----
---------------------S----------S-----------------------------S---------SS-----S
------------------------------------------------------S-----------------S-------
----------------SS-------S-------------------------------------S----S-----------
-------------------------S------S-S----S---------------------------S------------
-S--------S----------------------------------S-SS--------------------------S----
-S-------S-SSSS-S-------------------------------------------------------S-------
--------------S----------------------------------------------------------------S
-------------------------------------SS-----------------------------------------
----------------------------S---------------------------------------------------
--------S------------S-------------------------------S------------------------SS
---------S----------------------------S-SSSS-----S--------------------SSSS--S---
-------S--S--------S-SS--S-S-------------------S--------------------------------
----------------SS-----------------------------SS------------------------S--S---
-SSSS-------S-----------S-----------S----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------------
----------------------------------S---------------------------------------------
------------------------------------------------------------------------S---S---
---S-----------------------------------------------------S----------------------
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---------------------S-----------------------S----------S---S---------S----SS---
----------------S--------------------------------------------------------------S
------------S---------------S------------------S-----S----------S---------------
--SS----SSS-----SSS-------------S--------S--------------------------------------
---------------------------------------S---------------------S--S---------------
---------------------S--------SS---------------S-------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_61
-----------------------------------------GCACTAGGGTGGACGAAGAG-------------------
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>reverse_1401
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----------------------------------------CGCTGATGATGAGCTGGCTA--------------------
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>forward_1399
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-------------------CATCTTCTTGCTGGCCTCCT-----------------------------------------
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>reverse_2821
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--------------------CGTTAGAGGGCCACGGTTTA----------------------------------------
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