>input_sequence_80809
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---------------------------------ATGGTCGACAAGGCCTGCGGGGGCACCGAGAAGGAGGCCAGCAGCGT
CGCCCACATCGAGCACTTGTTTGCCGAGCTCTCCTCGGTCGGTCAGAAGGTGCTTCAATTCAATATGCTGTCCACGTCTG
GTGGGCAGGATGCCCTCAAGGAATCCGTGGACAAGCATGGCGGCTGCCCCGGCAACAAGACGGTCTATCTATATTCTGCC
CAATGCAGCGCGGACTGCAACGAGGCATGCTCTAACCACTGCGACATGGACTGCCCCTACATAGCCGCAAGATTTGGCTA
CATCATGGCTACACCTGCCAATAAGAAAGCCATCGACCAAGACATGGAATGCTTCAAGCGTTGCTCAAAGGAAAAGGATG
CCACAAATGACAAATGCCGCGTTGCATGCAAGCTGGCTGCCTCGCTCCCTTGA---------------------------
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>chr2D_1_TraesCS2D01G011600
ATGTTATTTTTGAACACGTGATGAACGTTAAAAAATATGATAAACATTTTAAAAATACACCAAACATGTTTTCATTTCTT
ATTCATTTTTAGATGTTCGTTTCCTTTTAAATGTTTTGTTTTTATACACGCAAACTTGAACAATTTCTTAGGCAATGAAC
AATTTTAATGAAACTATGAAAACTGAAAAAATATGTGATGACCATTTCTTGGCTATACAATTGCCATACCTCAAGTAGGC
AATTCACATATTTT-GAATACGTGAAAATTATTTTAAAATTTTGACAGCAGTTCTTTAATACAGGATTGACATTTTTTCA
TATGGGTGAGAAACATTTTTCATATACACATAAAAGGGTGAGCGGCAAGGCACGGAATAGGATGTCTCATCCAAGAGAGG
AGGAGCG------TCACATGGGTTCATGACCGGGGGGCGGTCTCAGTCGGGAAAGAAGGGTGTGTTGATGTGGGAGAAAA
CTAGTGAGCTCAATATAATTAACAACGACACTGGTGCTTAGTTTCCGTCTATAGAAAATCACCCAAGTCTTTTTCTTATA
TAAAAGACATAAGTACGTAGAAGAAAATCCACACCTCACATATATATGCATGTCTTTAGTGCTAAAATTGGAGCTCGGTC
CCTAAAAGGAAATTTGGAGCTCGGTCGTCGTGTGGGTGGGCGTTTTGGCCGGTCATATCATATAGAAATGCATGCAAAAA
ATTTGGCATGCACGGAGCTCTAATGGCTCATGGCCTCACAATCACATCACCAGATCATGGCCATTGCCTTGGCCTATATA
TAATAATCACATAATGAAACGCTGGCATCTCGATCAACACCAGCATTCATCGATCGTCTGTCACAAATTAAAGAGAAATC
GACTACAAGATATGATGGCAGCCAAGCGAAAGGCTAGCGTTGTCAGGTCCCTGCTC------------------------
------------------------------------------CTCCCACTTGCCTCAGCGAGTACTCCAAGCTCTGTGGC
ACGGGCGAGAAGAAGGACGCCGCGTGCGCCACCATGGTCGACAAGGCCTGCGGGGGCACCGAGAAGGAGGCCAGCAGCGT
CGCCCACATCGAGCACTTGTTTGCCGAGCTCTCCTCGGTCGGTCAGAAGGTGCTTCAATTCAATATGCTGTCCACGTCTG
GTGGGCAGGATGCCCTCAAGGAATCCGTGGACAAGCATGGCGGCTGCCCCGGCAACAAGACGGTCTATCTATATTCTGCC
CAATGCAGCGCGGACTGCAACGAGGCATGCTCTAACCACTGCGACATGGACTGCCCCTACATAGCCGCAAGATTTGGCTA
CATCATGGCTACACCTGCCAATAAGAAAGCCATCGACCAAGACATGGAATGCTTCAAGCGTTGCTCAAAGGAAAAGGATG
CCACAAATGACAAATGCCGCGTTGCATGCAAGCTGGCTGCCTCGCTCCCTTGAAAATGCATACTCTCTCTTTTTTTAACC
CATGC-----TTCATTCATCTCTCTTTTTTTTTTTAAACGTGCCGTCTTATTCTCGTAAAATCTATCTATCTATCTATAA
ATAAAAGAGCAGCAAGTAAACCTTTTACTTTTCTCTCTGAGTCGTCTCAACTCACTTGTTTGAATTGCATCACAACATAT
ATCTCCCTGGCATGCTGAAATGAGAGGATATATCTCTACCTTCACATTACCGTATATATAGGGTAACGTCTTACGCGAC-
---ATATATTGGGTACATACAAGCAGTGACGTATCAAGAAAGAAAATGAAGGGTGGGCCCAAAGTTTACGCTCGGAAAAC
TGGACCCTCTTTTGAAGAAAAAATCCTTTTGTGCAGAAAAACTGATTTTTTTTTTCTAGATTACTACCGGAAACATGTAC
TCCCGCTGTTCCACAATCATTTCTGCAACCTAGTTTAGGTTGCTAAAACGTCTTACATTGTGGGACGGAGGGAGTGGTAT
TTACTAGGTTTTTTTTTGGATTTTGTGAAAAATATCAAATTATGAACAAAAGTTTGAATTATTTAGCAAAATATCCATTC
TCCTTTCATTAGGACACTCAAACTTCTTATGCCCCCTGCCACCACACCTGAACCACACAATATCACTCGTACGAGAGTTA
GAAGCACGAGACGATTCAACCTTGGATTGAGTTACTTCCTTCGTAGCCGACTTAGAATCTGATTTGAAACCACTATTACC
ACCACCTTCTCGCTGAT---------------------------------------------------------------
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----------AATTACGTCGCATCGAGTTTGATAAATTATCATGACCACCACGACGCTTTACTTGCTGCTCTGCTCGAAT
GGCATGGTCTAATAACCCCTATAATCCATTATATTCTAGCATATCGACACGATCTCGTATCTCTGATTTCAAACCATGCA
TGAATAGTGCCATTGTAGCCTCTTCTTGCTCCTCCACCCCTGTACGAATCAATAATATTTCCATCTTCTTATAATACTCC
TCAACACTAGAGTTA
>chr2B_172
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-----------AACTATGAAAACTGAAAAA-TATGTGATGACCATTTCTTGGCTATACAATTGCCATACCTCAAGTATCC
AATTCACATATTTTCGAATACGTGAAAATCATTTTAAAATTTTGACAGCAGTTCTTTAATACAGGATTGACATTTTTTCA
TATGGGTGAGAAACATTTTTCATATACACGTAAAAGGGTGAGCGCCAATGCACGGAATAGGATGTCTCATCCAAGAGAGG
AGGAGCTAGCGTCTCACATGGGTTCATGACCGGGGGGCGGTCTCAGTCGGGAAAGAAGGGTGTGTTGATGTGGGAGAAGA
CTAGTGAGCTCAATA----TAACAACGACACTGGTGCTTAATTTCCGTCTATAGAAAATCACCCAAGTCTTTTTCTTATA
TAAAAGACATAAGTACGTA---GAAAATCCACACCTCACATATATATGCATGTCTTTAGTGCTAAAATTGGAGCTCGGTC
CCTAAAAGGAAATTTGGAGCTCGGTCGTCGTGCGGGTGGGCGTTTTGGCGGGTCG-ATCTTATAGAAATGCATGCAAAAA
ATTTGGCATGTACGGAGCTCTAATGGCTCATGGCCTCACAACCACATCACCAGATCATGGCCATTGCCTTCGCCTATATA
TATATATATATATACACACACA---CATCTCGATTAACACCAGCATTCATCGATCGTCTGTCACA-----AAGAGAAATG
GACTACAAGATATGATGGCCGCCAAGCGAAAGGCTAGCGTTGTCAGCCCCCTGCTCATCGTCACACTCGTTGTGGCGGCG
GTGGCATCATCCGTGTCGGTGGCCGGGGGGGAGAGAAGGCTCCTCCCACTTGCCTCAGTGAGTACTCCAAGCTCTGTGGC
ACGGACGAGAAGAAGGACGCCGCGTGCGCCACCATGGTCGACAA------------------------------------
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---------------------------------------------------------------------------GGCCA
CACCATGGCCACACCTGCCGATAAGAAAGCCATCGACCAAGACATGGAATGCTTCAAGCGTTGCTCAAAGGAAAAGGACG
CCACAAATGACAAGTGCCGCGTTGCATGCAAGCTGGCTGCCTCGCTCCCTTGAAAATGCACA----CTCTTTTCTTAACC
CATGCGATGCTTCATTCATGCATGATTTCACATATCCTCA----------------------------------------
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----------CATTCTGAAATGAGAGGATATATCTCTACCTTCACATTACCGTATATATAGGGTAATGTCCTGCGCGCGC
GGTATATAGTGGGTACATAC------------------------------------------------------------
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>chr4D_1997
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------------------------------------------------------------------------------TC
TCCTCTCATTATGACACTCAAACTTCTTATGCCCCTTGCCACCACACTTAAAGCACACAATATTACTAGTACGAGAGTTC
GAAGCACGAGATGATTCAACCTTGGATGGAGATACTTCCTTGGTAGCCGACTTAGAATCAGATTTGAAACCACTATTACC
ACCACCCTCTCTCTGAAAATTACGTCGCATCGAGTTTGATGAATTATCATGACCGGCACGACGCTTTACTTGCTGCTCCG
CTCGAATGGCATGGTGTAATAATCCTTGTAATCCATTATATTCTACCATATCAACACGATCTCGTACCTCTGATTTCAGA
CCATGCATGAGTCGTGCCATTGTAGCCTCTTCTTGCTCCTCTACCCCTGTACGAATCAATAATATTTCCATCTCCTTATA
ATACTCCTCAACACTAGAGTTACCTTATTGAAGCTGCTGCAAGCGTGTGTACAAGGTCCTAGTGAAGTGCTCCGGAACGA
AGCGTCTCTTCATGATACTCTTCATCTGATTCCAAGACTCTGGACGCCCTCCCGCGCGACATAGTTGGTTCCACCATATT
AAAGCATAGCCCGTGAACTCAATAGATGCAGCACGAACTTTTTTCTCCTCGGTGTACCGCTGTCCATCAAAAATCTGATC
CACGCGCATCTCCCACTCCAAATAATCATCCCGATTGTCTTTGCCGCTAAACGACGGTATGGAAATTTTTATTCTTCCAA
TACCATCATCTTCGTAGGCGCGTCGCGGACGTTCATGTCCTCCCCCATGGTGTAGGCCACCTCCATGATGGTTATAAGCA
CACCGCACGGGCTCGTAATAGCTACCAGCCCCCTCAGACTGATGGTCTTGATGTTCACCATTGTTGCGAACTTGTTCGCC
TACCCGCTGTCCAGATAATTGCCGATGACGACGCGGTGCAGCAGACCCATCACTAGGTGGTGAACGTGGTCTCAATCGAT
GAACGGCCTCAGTCAAATCAGCAATCTTTTTTCCTAGACTTTCCTCAACCTTGTCGATGCGCCTCCCCACTAGATTTAGC
ACATAGTCACGAGTTGCCTCCAATCCTAGCACGATAGCCGGCGCAACACTCGGATCATAAGTGGGCAAGGGCAGCTCGTC
TTCCGCATCTCCTTCATGTGCACCATGCACACTTGACTTTGATTTATGTGAATTCACCATTGTAGCAACTCAAGTAGATC
AACTGAAGAACCAGAGAGAGAAAAAATTGTACCGTGATCAACCTTGCTCTGAATACCACTTGATGGGACCCGACTAGACG
GCGAGTCGTTCATTGGCCCAATCTTTCACGGTACACGAAAAACAGCGACAAACCACGATGATTCTCGTAATAGCAGCAAA
CAGACGAAGAAATAGACGAACGGCTCTTTGGATCAAGCAGGACACCAGAAGACCAAAGTGCACAAAAACCAGTGTATAAT
CAATCACAGATCAATTCCACGCCAAGCAACTCTCAGATCCCTCGTAGATCAGCAAGCAAATATCTTTGGCGCAACCATAA
CGCTGCCTTTTCTGTATATTGTTCAACTCTGAAAAAACTCCCGTACAAAAGCTGAAACCTGCCCATTATATAGGCGACAC
TTACGCTGACCAAATACTTCTCCTAATTGGACTCGTACAGATCCAAACAAACCAGACAAAATCTAGCAACCTACCTATAC
TCCTTTTCCGATTTAAAAGCTCACGTACAGACTCCAAAGACTACGTACTAGGACTCTCTAATTGCAAGGAAACTAATTAA
ATATTCCAGCCACGTTGATCACATAGTATCTAATCAAAAGATAAATGAGATATTTCTTTGGCACGCTCTGGACTACCATC
TTGGAGGTGTTCTGAAATTTGGCATCACCGTATCTTTCTTTGGACTAGCTGGTGGCACCTCCACGCAAATAGAACCAACA
TAAAACGCAACTGGAGTTTGCGTATTTGCATGTACAGAGGCCTTCATGTAACATGCGTCTCTCTTCTCTCGACTAATGTG
TGGCATAGCTCCTATAACACATGTGAAATCCTTCATTACGCTAGTAAAGGTCACATCATCCCCTCCCTCTTCAAAGGAAA
CCGTCCTCGGTTTCGGATCAGCCTTTGCAATCTTCTTTAATGGAACATGTTCATCCACCTTGATTGTATTGCCAAACATT
GGGCGTAGCACACATCGCTTTCCAGCATCCCAAAACGAATATGTGTTGGTTGGACCTTCATGTGTTGCGTTATGGTCGTA
TTGCCATGGCCTTCCCAATAATAAGTGGCATGCTTCCATTGGTATGACATCACATATCACCATATCAGTATAATCACCAA
CAGAGAATTTGATGCGCACCTTATGAGTAACCTTCAACTTCCCAGTATAATACAACCACTCGACACGGTGGGGTTGCGGG
TGCTTCCATGCAGGCAACCCCAAAGCATCAACCAACCCTTTGCTGACTGCATTGGTGTAGCTTCCACCATCTATTATCAG
CTTGCAATTGGTGGTGTTGATCTTACATTCAGACTGGAAAATATTCCATCGCTGCCCCTTATCCTCAATTCGATCTTCTT
GCACTCGCTGCACCATTAATGATGGGTATGCTTCCGCAGCTTCAAAACTCCTCGCATTCACTTCTTCCTCATCTTCAGAT
TTCTCACTAGACGGGTCAGCATTTTTCTCTCCATCACTCGCAGACATGTATCCTTCTTCTGTGAGGAGAACTCTCCTCTC
ATTATGACACTCAAACTTCTTATGCCCCTTGCCACCACACTTAAAGCACACAATATTACTAGTACGAGAGTTCGAAGCAC
GAGATGATTCAACCTTGGATGGAGATACTTCCTTGGTAGCCGACTTAGAATCAGATTTAAAACCACTATTACCACCACCC
TCTCTCTAAAAATTACGTCGCATCGAGTTTGATGAATTATCATGACCGGCACGACGCTTTACTTGCTGCTCCGCTCGAAT
GGCATGGTGTAATAATCCTTGTAATCCATTATATTCTACCATATCAACACGATCTCGTATCTCTGATTTCAGACCATGCA
TGAATCGTGCCATTGTAGCCTCTTCTTGCTCCTCTACCCCTGTACGAATCAATAATATTTCCATCTCCTTATAATACTCC
TCAACACTAGAGTTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-------------------S----------------------------------------------SS-
-----------------------------S--------------------------------------------------
-----------------------------S--------------S---S-------------------------------
------S-----------------------------------------------------------------------S-
---------------SSSS---------------------S---------------------------------------
-------------------SSS----------------------------------------------------------
--------------------------------S----------------S----SS---S--------------------
----------S------------------------------S----------------------------S---------
--SSS--SSSSSS-SSS-SSSSSSS---------S------------------------------SSSSS---------S
-------------------S--------------------------SS--------------------------------
----------------------------------------------------------S---------------------
----S---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-
--S------S---------S----------------------------------------------------------S-
-------------S----------------------------------------------S-SSSS-------S------
-------------------SSS-SS---SSSS-S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---S----------------------------------------------------S---S-S----SS-
--------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----S------S-----------------------S-----------S-S--S----------S---S-----------S
-----------S---------------S---S---------S-----------------S--------------------
------S----S----S---------------------------------------------------------------
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---------------------------------S-------------SS----------------------S--------
--------S------S--S-S-----------------S------S-------------------------S--------
-----S----------------------------S-------------------------------S-------------
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>forward_407
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-------------------------------------------------------------------CATCCAAGAGAGG
AGGAGCG-------------------------------------------------------------------------
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>reverse_1296
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---------------TGCAACGAGGCATGCTCTAA---------------------------------------------
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>forward_1177
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-------------------------------------GTCGGTCAGAAGGTGCTTCA-----------------------
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>reverse_5009
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------------------------------------------------CCACGACGCTTTACTTGCTG------------
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