>input_sequence_80803
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------ATGCCTCAGAAGACACATTTTCCTTTCTTCACTTTGTTGCTCTTTCAGATTCAGATAGATCGACCGACCGGAGC
CATGCCTCTCCCCGCGAACCTTGTAATGGGGTCCGCCTTCGTCGCGCTCGGCGTCACGCTCCTCGCCGGCTTCCTCTACG
TCGCCGTCTGGTCCAAGGCCCTCGCGCCGTCCGACAACTGGTTCTTGCTCGCCGTTCAGAACGACAGGTGC--CATCAAT
GATATCTACTCACCTCACCTGGAGCACTAGTACTTCACTTTCGTTTTGAGATTGCCGCGTTATTGCTCCGCCTGATCTGT
TCATTGTTTTCCAGGTATTACTGCTTGCTTGTGCCCCTGACGGTTCCTGTCATAATCGTGGCTGTGTACCTGCATTGGCT
GAGCATGAAGATGTTCAAGCATGCGTGA----------------------------------------------------
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>chr1A_1_TraesCS1A01G235300
GCGTGGCACAGTTAGCCCAGTTCAACTATATTCTTGCCGTGGGCCCAACAGAGGTGGAATCTGAAATGGTTTGACTTCTT
CACACCCACTGTTGTCGATAAAAGCATTAGTCATGCCTTGTATGAAATTCTGAATTATATATGTGGATGGATGGCTCGTA
CTATTGCAGGTCAGCGTCAGGTTGAGAGATAAGCCAGAATTCTTCCCGATGAGCGTCGATGATCTCATCTCTCTGTTTAG
GGACGAAGTAGCGGCCTACAGATAGGGCTGTCAGTCAGACAAGCTCAAAGCTCGCGAGCCTTTGAACTATGAGGACCTTT
TAATTATGATGAAGTTTTAGATCCTTGTTGTATTGTAG---TGTGTCTTGAACGTCTGAGCCTTGACGTACTACATGACT
TGAGGATCATTTCTGTGGTGTGCTCCCCTATGTCTATGTGTGCAGTGTGTGATGTTTGGTGCCAGTTCTGTCAAAAAAAT
TAAAAATGTTTGGTGCCAGTGTCACCTATAGGTTCAGGTTCAGTCAAGATGAGCTGCGGTGTTTCTACATCGTTTGCTCA
ACGAGATGAGCATGGGCCGGGCAATGTTTACTGT-------------------------GTTGGCCTATGCACAGATGAT
TCGAGTATGAAAGAACAAATCGTGTCCTGTTTTTATACCAAGTCTATGAAAACTGGGCTACGTGCTTTGCTATGCTCGCT
TGTCCTAGGCATCGTTT----------ATAGCGCCCGCGTATGTATGCAGTATGCTGGTAGATGAGATAGGGGTTTTCAC
CTGAAATAGAAG---GCAGCAGACGACGGCCGGCGTGCGGCGTGGCCTCGGCGTTGGGGAGCGGCGGCCGCTGACGGTGA
TTCCCTTTTACT---TTTCTGGACTCGTGGCCGAGAGCGCCAGCGACAGACCGACGAGCTGCTGCCGCCGGTGCCCTCCG
ACCGCCCCCGCGCAGGTTTGTTGCTGCGTCAAGCCCGTCCGCCCCTCCCTCCTCTGTCTAAACGCACA--CAAGCTGTTC
GGCGCAATGCCTCAGAAGACACATTTTCCTTTCTTCACTTTGTTGCTCTTTCAGATTCAGATAGATCGACCGACCGGAGC
CATGCCTCTCCCCGCGAACCTTGTAATGGGGTCCGCCTTCGTCGCGCTCGGCGTCACGCTCCTCGCCGGCTTCCTCTACG
TCGCCGTCTGGTCCAAGGCCCTCGCGCCGTCCGACAACTGGTTCTTGCTCGCCGTTCAGAACGACAGGTGC--CATCAAT
GATATCTACTCACCTCACCTGGAGCACTAGTACTTCACTTTCGTTTTGAGATTGCCGCGTTATTGCTCCGCCTGATCTGT
TCATTGTTTTCCAGGTATTACTGCTTGCTTGTGCCCCTGACGGTTCCTGTCATAATCGTGGCTGTGTACCTGCATTGGCT
GAGCATGAAGATGTTCAAGCATGCGTGAGGAGTA-------GCCGTGCTAAACAAAATCCATGTTGATGAGAATCATCGT
AGGCATCATGAGTTCATCACGGTTTATTTTTTTGCGGGGGATGAGTTCAACACACTTGAGATTGCAATATTTTTCTT-TA
TATAAGACAAATTTCCTAGTGAC-TTTTTTCTTCTTTGGGGAAAACTACGGTGGATCTTTTTTACCGGAAAATGCACTTG
ATCATATTA-TAACTGAGGTGTGAGAGCATCTCTAGCCGATTCCTTATAATTTAACTCCGAAGAGCATCTCTAACCGATC
TTGTATAATCCTTTCGTGGAGGATAATAGGTGGCTAATTGGAC-------------------------------------
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--------------------------------CCCTACTCGGCGCAACCACCACCGATGCCCACGATTCCTGTTGGGATG
AAGAGGCAAGACCCTTTCGCCACCCCGCCG---GCCATCGTCGTCAACGCATCGTTGTCAGAAACGACCACCAAGCCGCC
GCCTGCATTAAAAAAAGTTTGGGCACCAAAAAACCTCCTTGGAGCCACCTCACCGGCAACTACCGCTGACAGCAAGGTCG
CTGCATCTCCGGCGACGGCAGGCTGCCGTCCCGCTGCTCCAACCGTCGGTAAGCGGGCAAGGAAGCTGACGGCGGCCGCA
CCGGCGCTCGCCGAGGAGGTGGCGAATAAGAAGGACAAGAAGGTGGCTCCGGTGCCTCGTCCTCGTCCGGCGCCTCGGAC
CTCGTCTTCGACCACCCCTACGACCACTCCTCTGGCGTGTCCGTCCGCTGCTGCCGGCAATAAGGGCCGTGGCCACCAAG
TGGTCGATGAAATGCCATCAAGGTAAAAAAAATGTCTTTTCATTTTAGTCGGTGCATTGTTTGGCATTTCTTACAACCAT
AGGGTGATGAATA---TTGTTGTTGTTGTTCTTGTCGTGGTGCGTAGATGAACACGGCTGAAATTATTGTTGTCTTTGGA
GGAGTCGAATATGCTTGGGCTTGACAATCTCAACTATGACTCGATGTTCAATCATCAAGAGGGCGAAGTGGAG
>chr1B_1
GCGAGGCACAGTTAGCCAAGTTCAACTATATTCTTGGCGTGGGCCCAAAAGAGGTGGAATCTGAAATGGTTTGGCTTCTT
CACACCCACTGTTGTCGATAAAAGCATTAGTTACGCCTTGTACGAAATTCTGAAT----TATGTGGATGGATGGCTCCTA
CTATTGCAGGTAGACGTCAGGGTGAGAGATAAGCCGGAACGCTCCAAAATGAGCGTCGACGATCTCATCTCTCTGTTAAG
GGATGAAGTAGCGGCCTACAGATAGGGCTGTCAGTCAGACAAGTTCGAAGCTCGCGAGCCTTTGATCTATGAGGACCTTT
TGATTATGATGAAGTTCTAGATCCTTGTTGTATTGTACTACTGTGTCTTGAACGTCTGAGCCTTGACGTACTACATGACT
TGAGGACCATTTCTGTGGTGTGCTCCCCTATGTCTATGTGTGCAGTGCAGTGTGTG------------------------
-----ATGTTTGGTACCAGTGTCAGCTATAGGTTCAGGTTCAGTCAAGCTGAGCTGCGGTGTTTCTACATCGTTTGCTCA
ACGAGATGAGCATGGGCCGGGCAATGTTAACTGTGTTGGCCTTTTGGGAGTTTGATCGAGTTGGCCTATGCACAGATGAT
TCGAGTATGAGAGAACAAACCGTGTCCTG--TTTTTACCAAGTTTATGAAGGCTGGGCTACGTGCTTTGCT-----CGGT
TGTCCTAGGCATCGTTT----------ATAGCGCCCGCGCATGTATGGA--------GTAGATGAGATA-GGGGTTTCAC
CTGAAATAGAAGAACGCGGCAGACGACGGCCGGCGTGCGGCGTGACCTCGGCGTTGGGGAGCGGCGGCCGCTGACGGTGA
TTCCCTTTTACTACTTTTCTGGACCCGCGGCCGAGAGCGCCAGCGATAGACCGACGAGCTGCTGCCGCCGCTGCTCTCCG
GCCGCCCCCGCGCAGGTTTGTTGCCGCGTCAAGCTCGTCCTCCCCTCCCTCCCCTGTCTAAACG--CACGCAAGCTGTTC
GGCGCAATGCCTCAGAAGACACATTT-CCTTCCTTCACTTCATTGCTCTTTCAGATTCAGATAGATCGATCGACCGGAGC
CATGCCTCTCCCTGCGAACCTTGTAACGGGGTCCGCCTTCGTCGCGCTCGGCGTCGCGCTCCTCGCCGGCTTCCTCTACG
TCGCCGTCTGGTCCAAGGCCCTCGCGCCGTCCGACAACTGGTTCCTGCTCGCCGTTCAGAACGACAGGTACACCATCAGT
GGTATCT-CTCGCCTCACCTGGAGCACTG---CTTCGCTTTCGTTTTGAGATTGCCGCGTTATTGCTCCGCCTGATCTGT
CCATTGTTTTCCAGGTATTACTGCTTGCTTGTGCCCCTGACGGTCCCCGTCATAGTCGTGGCTGTGTACCTGCATTGGCT
GAGCATGAAGATGTTCAAGCATGCGTGAGGACTGAGGAGTGGCCGTGCTAAACAAAATCCATGTTGATGAGAATCATCGT
AGGCATCATGAGTTCATCACACTTCATTTTTTGC---GGGATGAGTTCATCACATTTAAGATTGCAATATTTT--TT-TA
TATAAAACAAATTTCTTAGTGATTTTTTTTCTTCTTTGGAAGAAACTACGGTGAAT-TTTTTTACCGAAAAATTTGCTTG
GTCATATTAGTAACTGAGGTGCGAGAGCATCTCTAGCCGATCCCTTATAATTTAACTCCTAAGAGTATCTCTAACCGATC
TCCTATAATCCTTTAGTGGAGGATAATAAGCGGCTAATTGGACCTAACCCCAAACCGTTAGGGGAGGAAAAATTATCCTC
CTTGGCCCAAAACTTTGGCCAAGTCTCCCAAATATACTTGACCTTGGCCGTGCGAAGTAAATTTTCTTTCCCTCCTCTCG
CCCGAGCGGCCACCCCTTCCCGCCGGCGCCGCCCCTACTCGTCGCAGCCATCGCTGATGCCCCTGATTTTGGCTGGGATG
GAGAGACAAGACCCTTCCACCACCCCGTCAGCTGCCATCGTCGGCGGCGCATCGTTGCCAGAAACGACTACCGCGCCGCC
GCCCACGTC-ATAAAAGGTTGGGCACCA-AAAACCTTCTTCGGGCCACCTCACCGGCAACCACCACCGGTAGCAAGGTCA
CCACATCTCCGGCGATGGCAGGCTGCCATCTCGCTGGTCCAGCCACCGGCAAGCGAGCAAGGAAGCAGACGACCGCCGCG
TCGGCACTCGCCGAGGAGGTGGCGAAGAAGAAGGACAAGAAGGTGGCTCCGATGCCTCATCCTCGTCCGGCACCTTGGAC
CTCGTTTCCGATCACCCCTATGGGCACTCCTGTGGCGCATCTGGCCGCCGCTGCCGACAACAAGGGCCGTGGTTGCCAAG
TGGTCGATGAAATGCCATCAAGGTAAAAAAAATGTCTTTTCATCTCGGTCGGTGCATTTTTTGGTATTGCTTGCGGCCAT
AGGGTGATGAAGATTTTTGTTGTTGTTGTTGTTGTCGTGGTGCGGAGATGAATGCGGTTG-AATTCTTGTCGTCTTTGGA
GGAGTCGAATATGCTTGGGCTTGACAATCTCAACTATGACTAAGAGTTCGATCATCAAGAGGTCGAAGAGGAG
>chr1D_6
-----GCACAGTTAGCCCAGTTCAACTATATTCTTGCCGTGGGCCCAAAAGAGGTGGAATCTGAAATGGTTTGACTTCTT
CACACCCACTGTTGTCGATAAAAGCATTAGTTATGCCTTGTATGAGATTCTGAATTATATATGTGGATGGATGGCTCCTA
CTATTGCAGGTTACCGTCAGGGTGAGAGATAAGCGGGAACTCTCCACAATGAGCGTTGACGATCTCATCTCTCTGTTAAG
GGACGAAGTAGCGGCCTATAGATAGGGCTGGCAG----ACAAGCTCGAAGTTCGCGAGCCTTTGAACTATGAGGACCTTT
TAATTATGATGAAGTTTTAGATCCTTGTTGTATTGTACC---GTGTCTTGAACGTCTGAGCCTTGACGTACTACATGACT
TGAGGACCA-----------------------------------------------------------------------
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-----------------------------------------TTTTGGGAGTTTTATCGAGTTGGCCTATGCACAGATGAT
TCGAGTATGAAAGAACAAAGCGTGTCCTG--TTTTTACCAAGTCTATGAAGACTGGGCTACGTGCTTTGCT-----CGGT
TGTCCTAGGCATCGTTTATACTCCTTTATAGCGCCCGCGTATGTAC------------------------GGGGTTTCAC
CTGAAATAGAAGAACGCGGCAGACGACGGCCGGCGTGCGGCGTGACCTCGGCGTTGGGGAGCGGCGGCCGCTGACGGTGA
TTCCCTTTTACT---TTACTGGACCCGCGGCCGAGAGCTGCAGAGATAGACCGACGAGCTGCTGCCGCCGCTGCTCTCCG
GCCG-CCCCGCGCAGGTTTGTTGCCGCGTCAGGCCCGTCCGCCCCTCCCTCCCCTGTCTAAACG--CA--CAAGCTGTTC
GGCGCAATGCCTCAGAAGACACATTT-CCTTTCTTCACTTTATTGCTCTTTCAGATTCAGATAGATCGATCGACCGGAGC
CATGCCTCTCCCTGCGAACCTTGTAATGGGGTCCGCCTTCGTCGCGCTCGGCGTCGCGCTCCTCGCCGGCTTCCTCTACG
TCGCCGTCTGGTCCAAGGCCCTCGCGCCGAGCGACAACTGGTTCTTGCTCGCCGTTCAAAACGACAGGTAC--CATCAGT
GATATCT-CTCGCCTCACCTGGAGCACTG---CTTCGCTTTGGTTTTGAGATTGCCGCGTTATTGCTCCGCCTGATCCGT
TCATTGTTTTCCAGGTATTACTGCTTGCTTGTGCCCCTGACGGTCCCCGTCATAATCGTGGCTGTGTACCTGCATTGGCT
GAGCATGAAGATGTTTAAGCATGCGTGAGGAGTA-------GCCGTGCTAAACAAAATCCATGTTGTTGAGAATCATCGT
AGGCATCAC---------------------------------GAGTTCATCACACTTAAGATTGCAATATTTT--TTCTA
TATAAGACAAATTTCCTAGTGAC-TTTTTTCTTCTTTAGGGGAAACTACGTGCATT-TTTTTTACCAGAAAATGGGCTTG
ATCATATTA-TAACTAAGGTGTGAGAGCATCTCTAGCCGATCCCTTATAATTTAACTCCTAAGGGCATCTCTAACCGATC
TCCTATAATCCTTTAGTGGAGA------------------------------------TAGTGGAGGCAAAATTATTCTT
CTCAGCCCAAAAACTA----------------------------------------------------------------
--------------CCTCCCCACCGGCGCCGCCCCTACTCGTCACAGTCATCACCGATGCCCCTGATCCCCGCTGGTATG
GAGAAGCAAGACCATTCCACCACCCCGCCGGCTGCCATGGCCATCGACGCGTCGTTGCCAGAAACGACCACTGCACCGCT
GCCCACGCC-AAAAAATGTTGGGCACCA-AAAACCTTCTTCGGGCCACCTCACCGGCAACCAGCGCCAATAGTAAGGTCG
CTGCATCTCCGGTGACGGCAGGCCGCCATCCCGCTACTCCAACCGTCGGCAAGCGGGCAAGGAAGCCAATGGCGGCTGTG
TCGGCGCTCGCCGAGGAGGTGGCAAAGAAGAAGGACAAGAAGGTGGCTCCAGTGCCTCATCCTCGTCCGGCGCCTTGAAC
CTCGTCTCTGACCACCCCTACGGCCACTCCTGTGGCGCGTCCAGCCGCCGCTGTCGACAACAAGGGCCGTGGCCGCCAAG
TGGTCGATGAAATGCCATCAAGGTAAAAAAT-TGTCTTTTCATTTCGGTCAGTGCATTGTTTGGTATTGCTT--------
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>SNPs
---S--------------------------------------------S-------------------------------
-------------------------------S---------------------------------------------S--
-----------S-S-------S-------------S---S---S-S-S-----------S-----------------S--
----------------------------------------------S---------------------------------
-------------------------------------S------------------------------------------
------S----------------------------------------SSSSS---SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------S---------S-----------------------S-------------------------------
----------------------------S---------------------------------------------------
-------------------S---------SS---S---------------S--------------------SSSSS--S-
-----------------------------------------------S-SSSSSSSS------------S---S------
-----------------S--------------------------S-----------------------------------
------------------------S--S------------------S-----------------------S---S-----
S-----------------------S---------------------------S-----------SS--------------
--------------------------S--------------S---------------------------S----------
------------S------------------------------------------S------------------------
---------------------------------------------------------------------S--------S-
-------S---S----------------SSSS----S-------------------------------------------
--------------------------------------------S--S--------------------------------
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--------------------SS--S-------SSSSS------------S-------S---------------SS-----
-----------------------------------------S-----------S--S-----------------SS----
-----------------------------------------S-----------------S--------------------
-SS-----------S-------------S-S-------------------------------------------------
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-----------------------------------------S----S---S-----------SS------S-S-------
S---------------S-S--------------------------S-----------S--------------SS------
---SS-S-SS-------S----------S-------S---S-S-----------------S-----S--S----------
---------------------------S---------------------S----------------S------------S
S-------------------------S-------------------------------S----------------S----
-------S--------------S--------S-----S-----S----S-------S---S-------------S-----
---------------------------------------------SS-----------------S---S---S-SS----
-----------S------------------S-------------S-------SS---S--S----S----S---------
-----------------------------------------SSSS----S------------S-----S----
>forward_715
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-------------------------------------------------------GGCTACGTGCTTTGCTATGC-----
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>reverse_1555
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----------------------------------CGGGGGATGAGTTCAACACA--------------------------
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