>input_sequence_80796
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--------------------------------------------------------ATGGGAGGGCGCGGCAAGAAGCGT
GGTATGGAACAGGGAGCGCCCCCCTCGATTACGCATAGTTTTAC---------TAGTAGTTGTTCATGGCGGTTCTGATT
TGTTTCTGGTTTTGGTTTCAGGTGCTGCGAAGGAGGCCGGCCGTGAGGGCAACGGGGAGAAGCCGGCGTCCGACGGGGGC
AGCGCGCTGCCGACGGCCAACGTCGTGCCCCCGACGAGGCGGGTGCCGCCGTCGAACGTCAAGATCGCCGAGTCCGCGAA
GCAGCTCACCCACGACTGCGCGGCCGAGTTCGTTTTCAGCCGCAGGGCGCGCCCTCCTGCGCGGCCGGCGATGACGGCGG
CCGTGTCGCCTGGCGCGCCAGTGTTCACCGACGAGGAGCTGGAGTTCCTCCAGTCGGTAATTCCTCCGCCGCCGGGCGGA
TATTAG--------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G287500
CATTGATATTACGCTAATGTGCTAGATTTTTTT--AGTTCTTTAAAATGTTCTATAACATCCGATGCACCGATAGCATCA
CAATTACGGATGCAACGGATACATTCTCGTTGGGACGAGGCTCCCGTTGCAGTTGATAGAGAAGCGAGACACACAAGTCA
GCTACGCAAGCGGTTTCCGATCTCTTTAATTTCTACTAGGCGGCAACGGATGGGAGAACGCGAGCAACGGGACGCGCCGA
CGCCGAACGCGTACGCACCCTCATCGGCGCGTACCCAACCACCTCTGGCTCATTGACGTCGTACGTCGTCTTCCTCTCTT
CGCTCAGCAGGATAGTAATCACTTGCTAAAGAAGAAAAGATTCAATGCTAATCACCGCGCGTCTCGCCGGTACGGTGTAA
TCCCTTCACCCGCGAATAAGTGTATATTAGGCTTTAAAATTTATTCACAAAAAAGT--ATATTTCTATTTTTTCAATGTA
TTTTAAAATATT--AAAAATACTTCTCTCTCATCGCATGGTAATCAAGACCAATATCGTTCC-ACACATGATCTCCTTAA
TTTCTACATATCCTTAACTTATTAGAGATTGAATAATTGAAGAG--GAGAGATAGTGGTTTGCATCTTCCTAATGCATTT
TTCACTCTATACTTCATAATCTGTTTTAGTAAAAAAAAATATGTATATTTATTCGTGGAGGGAGGAAGCAGGTGACAAGC
GAACAAAGGAGCACACCGGTGCGAGGGTATCGACTTTAAAGCCGGCCCCTGCCCTGCCCCGTAACGCATGCATGGCTCGC
GGGAACTGCAATGTGGCAGCCTCACCTCGTTCTCCGCGCGACACGGCGGTACCATGCACCTTGGCATGGCACCGTGGACG
TGCGTCCAGACTGGCGCAGCCCAGCCCGCGGACACCTATAAATG--GGTGCCCAGGCCACAAGCCGTTCTCATCACAAGT
TCACAACGCACACACATTGAGTAAGTGTGTAAGTAA-----GTGACAGATTGAACAATGGGAGGGCGCGGCAAGAAGCGT
GGTATGGAACAGGGAGCGCCCCCCTCGATTACGCATAGTTTTAC---------TAGTAGTTGTTCATGGCGGTTCTGATT
TGTTTCTGGTTTTGGTTTCAGGTGCTGCGAAGGAGGCCGGCCGTGAGGGCAACGGGGAGAAGCCGGCGTCCGACGGGGGC
AGCGCGCTGCCGACGGCCAACGTCGTGCCCCCGACGAGGCGGGTGCCGCCGTCGAACGTCAAGATCGCCGAGTCCGCGAA
GCAGCTCACCCACGACTGCGCGGCCGAGTTCGTTTTCAGCCGCAGGGCGCGCCCTCCTGCGCGGCCGGCGATGACGGCGG
CCGTGTCGCCTGGCGCGCCAGTGTTCACCGACGAGGAGCTGGAGTTCCTCCAGTCGGTAATTCCTCCGCCGCCGGGCGGA
TATTAGCGGTGCGGCGGGCAAGCTGGTCGGCCACAGGCGGAGGCGCTGCCACCTGCGGGGCATGGCTATAAATGTTGTGT
TGTTTTGCTTGAAGAAAAATCCCGGTGTATCCAATAAGACAATAATATAT---ACACCGTCCGTTTCAAATTACTTGTCT
TAAATTTATTTAGATACAGA---------CACTAAAACTTGTCTACATATATCTGTATTTAAACAAATGTAAGACAAATA
ATTTGGAACGAAGGGAGGGAGTACTAATGACATATTCAGAGCTG-TCTCTCTATGTGAATGTCTTTGGATAGGAACTAGA
AACAGGACAAAAACAAATTAAA-AAATATGCTTAAGTTTCCAAAACTCCTGAAAAATAGAGTATATTTGGGAGGTCACGT
TCACCAAAAATGCAAAATTTGAAGTTCAAACTAAAATACATTTGCAAGGTATAGAGAAACAAATCCAAGAAATGAATAGT
GACAAACGGTGCATCACTATTTCTGTATATTTTTTCCTGACCTTCCAAATGTATTTGTGTCTGAACCTCAATTTAACCAA
TTTAAGAACATGATATCTCCACTATATCATATTATTTGAGATATTT------AAGAAAACATGGTATGTTTGAAGTTTTC
ATTGCAACTGATTTCAACCAGATACTTTCTAGGAATACCTTACAACGTTAT--GTGGGAGAGGATGCACCCGTGCCGACA
TGTGTCACACGCGAAAGAGCGAGTGCTTTTCTGTTAGTTCTATG--ATTTTTTCTTT-CCTTTTCTTTTCATCTTTTCAC
TTAGTTGTTAGTAGATAGTTTTAGCATCTTACAAAATGAAACATAATTCTTTTTTTTCAAATATTTAATATTTATGTAAA
CCTGTTTCATAGTAGACTAAATTCTAGCACCAACATACTCTCAAATGTAGATGCTAGAATTTAGTCTACTTCGGGCCAGC
CCAATAGCAACCAGAGGGACATTTTAGTCTATGTTGGAATATAGATGCTGGAATTCAGCACCTACATACCC
>chr6B_1
CATTGATGTTGTGTTAATGTGTTAGATTTTTTTTTAATTTTCTAAAATGTCCTATGGCATTTGGTGCACCGGTAGCATCA
CAATTACGGGTGCAACGGATATACTCCCGTTGGGACGAGGCTCCCGTTCGAGTTGATAGAGAAGCGAGACACACAAGTCA
GCTACGGAAGCGGTTTCCGATCTCTTTAATTTCTACTAGGCGGTAACGGATGGGAGAACGCGAGCAACGGGACGCGCCGA
CGCCGAACGCCTACGCACCCTCATCGGCGCGTACCCAACCACCTCTGGCTCAGTGAAGTCGCACGTCGTCTTCCTCTCTT
CGCTCAGCAGGATAGTAATCACTTG-----GACGAAAAGATTCAATGCTAATCACCGCGCGTCTCGCCGGTACGGTGTAC
TCCCTCCGTCTGAGAATAAATGTACATTTAGCTTTAACATTTATTCTT--AAAAGA--GTATTTTTATCTTTTCAATGTA
TTTTAAAGTAGAAAAAAAATACTTTTCTCTTATCACACGGTAATCAAGACCAATAACATTCAGACATATAGTCTTTTTTA
TTTCTACATGCACTTAGCTCATTAGGGGTTGAGTAATTAAAGAGAAAAGAGACAGTGATTTGCATCTTCCTAATGCATTT
TTCACTTTATAATTCATAATGTGTTCTAAATAATTT--ATATGTACATTTATTCGTGGAGGGAGGGAGTAGGTGAGAAGT
GAA-----GAGCACACCGGTCCGAGGTTATCGACTTTAAAGCCGGCCCCTGCCCTGCCTCGTAACGCATGCATGGCTCGC
GGGAACTGCAATGTGGCAGCCTCACCTCGTTCTCCGCGCGACACGGCGGTACCAGGCACCTTGGCATGGCACCGTGGACG
TGCGTCCAGACTGGCGCAGCCCAGCCCGCGGACACCTATAAATG--GGTGCCCTGGCCACAAGCCACACTCATCACAAGT
TCACAACGCACACAC--TAAGTGTGT-AGTAAGTAA-----GTGACAGATTGAACAATGGGAGGGCGCGGCAAGAAGCGT
GGTATGGAACAGGGAGTGCTCCCCGAGATTACGCATAGTTTTAC---------TAGTAGTTGTTCATGGCGGTTCTGATT
TGTTTCTGGTTTTGATTTCAGGCGGTGCGAAGGGGGCTGGCCGTGAGGGCAACGGGGAGAAGCCGGCGTCGGACGGGAGC
AGCGCGTTGCCGACGGCCAACGTCGTGCCCCCGACGAGGCAGGTGCTCCCGTCGAACGTCAAGATCGCCGAGTCCGCGAA
GCAGCTCACCCACGACTGCGCGGCCGAGTTCGTTTTCAGCCGCAGGGCGCGCCCTGCTGCGCGGCCGGCGATGACGGCGG
CCGTGTCACCTGGCGTGCCAGTATTCACCGAAGAGGAGCTGGAGTTCCTCCAGTCGGTAATTCCTCCGCCGCCGGGCGGA
TATTAGCGGTGCGGCGTGCAAGCTCGTCAGCCACAGGCGCAGGCGCTGCCACCTGCGGGGCATGGCTATAAATGTAGTGC
TGCTTTGCTTGAAGAAAAATCCCGATGTATCCAATAAGACAATAATACATTCAACCTCAGCCC---TGAATTATTTGTCT
GAGATTTTTTTAAATACAGATGTATCTAACATTAAAATGTGTCTACATATATCTGTATCTAGACAAATATAAGACAATTA
ATTTGGGACGAATGGAGGGAGTACTAGTGACATATTCAGAACCTCTCTATG--TGTGAATGTCTTCGGGTAGGAACTAGA
AACAGGGCAAAAACAAATTAAAAAAATATGCTTAAGTTTCCAAAACTCCTGAAAAATAGAGTATATTTGGGAGGTCACGT
TCAACAAAAATGCAAAATTTGAAATTCAAACTAAAATTCATTTGCAAGGTATAAAGAAACAAATCCAAGAAATGAATAGC
GACAAATGGTGCGTCACTATTTTTGTATTTTTC-TCCTTACCTTCCAAATGTATTTGTGTCTGAACCTCAATTTAACCAA
TTTAAGAACATGATATCTCCACTATATCGTATTTTTTGAGTGATTTCTTTGAAAGAAAACGTGGTATGTATGAAGTTTTC
ATTGCAACTGATTTCAACCAGACACTTTCTAGGAATACCTTACAACGTTATATGTGGGAGAGGATGCACCCGTGCCGACA
TGTGTCACACGCGAAAGAGCGAGTGTTTTTCTATTAGTTTTGTG--TTTTTTTCTTTCCCTTTTCCTTTCATGTTTTCAC
TTAGTTGTTAGTAGATAGTTTTAGCATCTTACAAAACGAAACATAATTCTTTTTTGTCAAATATTTAATATTTATGTAAA
CC------------------------------------------------------------------------------
-----------------------------------------------------------------------
>chr6D_15
--------------TAATGTGCTAGATTTTTTTTAGATTTTTTAAAATGTTTTA-GGCATCCGGTGCATCGGTAGCACCA
CAATTACGAGTGCAACGGATACATTCCCGTTGGGACGAGGCCCCCGTTCCAGTTGATAGAGAAGCGAGACACACAAGTCG
GCTACGCAAGCGGTTTCCGATCTCTTTAATTTGTACTAGGCGGCAACGGATGGGAGAACGCGAGCAACGGGACGCGCCGG
CGCCGAACGCCTACGCACCCTCATCGGCGCGTACCCAACCACCTCTGGCTCATTGACGTCGTACGTCGTCTTCCTCTCTT
CGCTCAGCAGGATAGTAATCACTTGCTAAAGAAGAAAAGATTC--TGTTAATCGCCGCGCGTCTCGCCGGTACGGT--AA
TCCCTTCATCCGCGAATAAGTGTATATTAGGCTTTAAAATTTATTCAT--AAAAGAGTGTACTTCTATCTTTTCAGTGCA
TTTCAAAGTAGAAAAAA--TACTTCTCTCTCATCATAAGGTAATCAAGAACAATACCATTCA-ACACATGATCTCCTTAA
TTTCTACATAC----AACTTATTAAAGATTGGATAATTAAAGAGAAGAGAGATAGTGGTTTGCATCTTCCTAATGCATTT
TTCACTCTATACTTCATAATTTGTTCTAGTAAAA-AAAATATGTACATTTATTCGTGGAGGGAGGGAGCAGGTGAGAAGC
GAACAAAGGAGCACACCGGTGCGAGGGTATCGACTTTAAAGCCGGCCCCTGCCCTGCCCCGTAACGCATGCATGGCTCGC
GGGAACTGCAATGTGGCAGCCTCACCTCGTTCTCTGCGCGACACGGCGGTACCATGCACCTTGGCATGGCACCGTGGACG
TGCGTCCAGACTGGCGCAGCCCAGCCCGCGGACACCTATAAATG--GGTGCCCAGGCCACAAGCCGCTCTCATCACAAGT
TCACAACGCACACAC--TGAGTAAGTGTGTAAGTAA-----GTGACAGATTGAACAATGGGAGGGCGCGGCAAGAAGCGT
GGTATGGAACAGGGAGTGCTCCCCGAGATTACGCATAGTTTTAC---------TAGTAGTTGTTCATGGCGGTTCTGATT
TGTTTCTGGTTTTGGTTTCAGGTGGTGCGAAGGGGGCCGGCCGTGAGGGCAACGGGGAGAAGCCGGCGTCGGACGGGAGC
AGCGCGGTGCCGACGGCCAACGTCGTGCCCGTGACAAGGCGGGTGCAGCCGTCGAACGTCAAGATCGCCGAGTCCGCGAA
GCAGCTCACCCACGACTGCGCGGCCGAGTTCGTTTTCAGCCGCAGGGCGCGCCCTCCTGCGCGGCCGGCGATGACGGCGG
CCGTGTCGCCTGGCGCACCAGTGTTCACCGACGAGGAGCTGGAGTTCCTCCAGTCGGTAATTCCTCCGCCGCCGGGCGGA
TATTAGCGGTGCGGCGGGCAAGCTGGTCGGCCACAGGCGCAGGCGCTACCACCTGCGGGGCATGGCTATAAATGTTGTGT
TGTTTTGCTTGAAGAAAAATCCCGATGTATCCAATAAGACAATAATACAT---ACATCGGTCC---CAAATTACTTGTCT
TAAATTTTTCTAGATACGGATGTATCGAACATTAAAACATGTCTATATATATCCGTATCTAGATAAATGTAAGACAACTA
ATTTAGGACGAAGTGAGGGAGTACTAATGACATATTCAGAACTG-TCTTTG--TGTGAATGTCTTCGGATAGGAACTAGA
AACAGAGCAAAAACAAATTAAAAA--TATGCTTAAG-TTCCAAAACTCCTGAAAAATAGAGTATATTTGGGAGGTCACGT
TCAACAAAAATGCAAAATTTGAAGTTCAAATTAAAATTCATTTGCAAGGTATAAAGAAACAAATCCAAGAAACGAATAGC
GACAAACGGTGCATCACTATTTCTGTATATTTTTTCCTTACCTTCCAAATGAATTTGTGTCTGAACCTCAATTTAACCAA
TTTAAGAACATGATATCTCCACTATATCGTATTTTCTGAGAGATTT------AAGAAAACGTGGTATGTTTGAAGTTTTC
ATTGCAACTGATTTCAACAAGATACTTTCTAGGAATACCTTACAACGTTAT--GTGGGAGAGGATGCACCCGTGCCGACA
TGTGTCACACGCGAAAGAGCGAGTGCTTTTTCGTTAGTTCTATGATTTTTTTTCTTTCCCTTTTCCTTTAATCTTTTCAC
TTAGTTGTTAGTAGATAGTTTTAGCATCTTACGAAATGAAATATAATTCTTTTTTTTCAAATATTTAATATTTATGTAAA
CC------------------------------------------------------------------------------
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>chr6A_699
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-------------------------------------------------------------------GCAGGTGAGAAGC
GAACAAAGGAGCACACCGGCGCGGGGGTGTCGAGTCTAAAGCCCGCCG------------GTAACGCCTGCATGGCTCGC
CGGAGCTGCAATGTGGCGGCCTCAACTCGTTCTCCTCGCGCCACGGCGGCACCATGCACCTTGGAATGGCAC-------G
TGCGTCCAGGCTGGCGCAGCCCAGCCCGCGGACGCCTATAAATGCAGGTGCCCAGGCCACAAGCCGCTTCCATCCCA---
TCACGACGCACACACACTGAGTAAGTGAGTAAGTAAAGTGAGTAACAGGTTGGACGATGGGAGGAAGCAGCAAGAAACGT
GGTATGGAAC------TGCTCCGGGAGATTACGT-CACGTTCAAAACCAGAGTTACTAGCTGTTCATGGTAGT-----TT
TGTCACTGGTTTGCGTTTCAGGTGGGCAGC---------GCGGCGAGGGCGACGCGGAGAACCCGGCGGCGGAGGGGGGC
AGCGCGCTGCCGATGGCCAACGTCGTGCGCCTGATGAGGCGGGTGCTGCCGTCGAACGTCAAGATCGCCGAGACCGCGAA
GCAGCTCACCCACGACTGCGCGGTCGAGTTCGT-----------------------------------------------
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>chr6D_701
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---------------------------------------------------------------------AGGTGAGAAGC
GAACAAAGGAGCACACCGGCGCGGGGGTGCCGAGTTTAAACCCCGCCG------------GTAACGCCTGCAGGGCTCGC
CGGAGCTGCAATGTGGCGGCCTCAACTCGTTCTCCGCGCGCCACGGCGGCAGCATGCACCTTGGCATGGCAC-------G
TCCGTCCAGGCTGGCGCAGCCCAGCCCGCGGACGCCTATAAATGCAGGTGCCCAGGCCACAAGCCGCTCCCACCACAACG
CA------CACACAC--TGAGTAAGTGAGTAAGTAAAGTGAGTAACAGGTTGGACGATGGGAGGGAGCAGCAAGAAACGT
GGTATGGAAC------TGCTCCGGGAGATTACGCCCACGTTTAAAACCAGAGTTACTAGTTGTTCATGGTAGC-----TT
TGTCACTGGTTTGCGTTTCAGGTGGGCAGC---------GCGGCGAGGGCGACGGGGAGAACCCGGCGGCGGAGGGGGGC
AGCGCGCTGCCGATGGCCAACGTCGTGCGCCTGATGAGGCGGGTGCTGCCGTCCAACGTCAAGATCGCCGAGACCGCGAA
GCAGCTCACCCACGACTGCGCGGTCGAGTTCGT-----------------------------------------------
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>SNPs
-------S--SS-S----------------------S--S---------------SS------S-------S--------
---------S----------------S---------------------S-------------------------------
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----------S---------------------------------------------------------------------
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--------S--------------------------------------SSS-----S--S---------S-----------
-------S--SS----------------------S--S-----------------S-S---S------------------
----------SS--------------------------S-----------------------------------------
--------------------S----S--------S----------S-------------------S---------S----
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------------------------------------------------------------------S-------------
----------------S---------------------------------------------------------------
----------------S--S----SS------------------------------------------------------
------------------------S--------S------------------------------------S---------
----------------------------------------------S---------------------------------
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---------------------------------------S----------------------------------------
------------------------S----------------------S--------S--S--SSSS--------------
-------S-----------------------S------S-------------------S--S---------------S--
------S---------------------------------S-------S-SSS------------S--------------
------S-------------------------------------------------------------------------
---S---------------------------------S---------------S-------------------------S
--------------------------------------S-----------------------------------------
----------------------------S----S-------S------------------S-------------------
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----------------------------------------------S------------------S--------------
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--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_977
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-----------------------------------------------------------------------------AGT
TCACAACGCACACACAT---------------------------------------------------------------
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>reverse_2396
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---------------------------------------------------------------------------CCAGC
CCAATAGCAACCAGA--------------------------------------------------------
