>input_sequence_80793
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-----CTCCATCACCAACAGCCAGAGCATTCGTCCACCATAACCCGAAAACAGAGAGCTCGGCCGACAAGCACAGATTCA
TCAAGCAGGAGA-----------------ACCATGGCGTTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCG
TGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGTGGCCTTCCTGGTCAC-CGGCGTCATCGAGTGGCCGGTGGGCG
CGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGCATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCC
AGGGCCATCCCCATCTAATCCTAAGCTCATCCTAATCTAATCCCTTCC--------TGTATGT----TGTAGCCTGGTCA
TTCCGCATGAGTTGTGTGCATGATTGATGAAGAAGATT-CAATAAAATGGGTG--TTGT-TTG-----------------
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>chr5B_1_TraesCS5B01G034100
GGATTTAATGGTGAAAACGAATTTTTAATTCACTTTTTTAATTAGGAGATAAAATATTTTAAGCCGAAAACCAAAAAGAT
TTTTACTGATGTCATCTGTTCATATGTGGCAAAATGAGTGGTGATGGAGGCGTGTGGGCGATGTGCAAACGACCACACGT
GTGGGCGTTAGTTTTTCTGTAAATTTACTATTGAACTGGTGTTACCTAATAGGACGGTTGACTGCATATTAAATTATCTA
TCTTGTTCGGCTCAGTTGGGCTTTATTAAGAGGGTGCTTGGATCCAAGGGACTATTTTTAGTCTGACTAAAAATAGTCTT
TTTTAGAGGCTAAAGTTTCAAGCATCCCTGACTAAAGAGAGGCTAGGACTAGTCTTGAGGCTAAAAATTTTTAGTCAGAG
GAAACCTACTAAAATATGGAATAGTCCTCTCTCTCCTCATTTAACTCCTCTCCTTTAACACATGCGAGTTCTGGATTGGA
GGCTTTGAAGGATAATAAATGTTCATTAACTTGATTTTAGTCTTTTTAGTATTTGGATCCAAGCATGGGTGAGGCTAGCA
AGTTTTAGTCTCATTACTTTTAGTCATGAGACTAAAACGTATCCAAGCACCCTCTAATTTATAAAGTAGGCTTTCCTCTT
TTTTAATCTGCGTCTAGAGTACAAGGCAGACCACATGTATTGTTAAGTGTGACTTAAAGTTTTCTTTCTGGCCAAATTTT
TCTGTAATATAAGTCGGCCGACGTGCGTCCGGACGTTTGGGACCGGAGGAAGATGTCGACTAATACTTGCCGACTACATC
GAATAGTATTTCCTTCGCTTTCT--------GAATCCCATACGTGAGGGCAGCACCAGAAACCTCCAAGGCCCCAACAGA
GACACGTCTGAGCTGGGGAC-----------------------ATGTGCAACGCGGCCGTCAACCACTTGGATAACCACC
TGCTACGCGCACAGCGCCA--------------CGCGTCCCCGGCGCAAGGCCTCTATATATTGGCCTGCCGGGCGCGAC
GCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACCATAACCCGAAAACAGAGAGCTCGGCCGACAAGCACAGATTCA
TCAAGCAGGAGA-----------------ACCATGGCGTTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCG
TGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGTGGCCTTCCTGGTCAC-CGGCGTCATCGAGTGGCCGGTGGGCG
CGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGCATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCC
AGGGCCATCCCCATCTAATCCTAAGCTCATCCTAATCTAATCCCTTCC--------TGTATGT----TGTAGCCTGGTCA
TTCCGCATGAGTTGTGTGCATGATTGATGAAGAAGATT-CAATAAAATGGGTG--TTGT-TTGTGTTTGTCTTGTAATCT
AAGGCATTTGCAGTGTCTAT--GCTGTGTGAGGAGTTTGCTAGAAATTTGGTTGGTG------GATCACTGGGTTAACT-
GGCTGAT--------ATAGGAGTTCCAGATACATGTTA--ATATAGCAGAGGCCAACGCACGAGAGTCATTCTCATCAAT
ATTATTCTCGTCTCCCATCTTTTTTTTTTTTGATGTGAATAGCAGAAGCTCTGCCTTTGCATCATAGG------------
------------------------------GCAAAGGAAGTATTACAGAATACATTCATGGCCAAAACACCCACGTATAA
TAGCAGTACTGTTGAGTATATTTGTGTTGCATGTATTATGTATATTGTGACCCATCTCCTAGTCATATATAGTTGAGGTT
GAGGTCCTGCCTGTACTTATATATACGTGCACCGGCACCCCATCAATACAATAAATATTGTATTGCCAAACCGTCT----
-------------------------------------------CTCTACATGATATCATCCTTTCGGTCTCTGCCCTAGG
GTTCGCTGCCGCCGCCAACGCCGCCGCGCCCTCTCGCGCGAGCCGCCGCTGTCGCCGCCGCACCCCACCACCGCCGCACC
CCGCCGCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCGCTTCCGCCTCCTGCAGCGCCGACCCGCCGCCGCTGCTCGCCTCCTGATCGCGCCACCGCCGCCCCGT
CGC-----------------------------------------------------------------------------
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-------------GCCCTGCCTCTCCTCCCTACCGGCCGCTGCCTCCTCTTCTTCCCGCAGCCGCCGCACCTCACCGCCG
CCGCTGCTCCCAACCACCACCGAAATCCTAACCTGCCGCGCCACCCCACCCCGCCACGCCAATGGACTCCCCGGG-TCCT
CCACCACCCGCTCGTCGAACCCCTTCGAC-GCCCCGAGCCCTCCGCCGAGGCCATCCGTGACC
>chr5D_778
GAATAATAC-----------------------------------------------------------------------
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-----------------------------------------------------------------CTTGCCGACTTCATC
AAATAGTATTTCTTTCGCCGTCGACCGGGAGGAATCCCATACGTGAGGGCAGCACCAGAAGGCTTCGAGGACCAAACAGG
GACACGTCTGAGCTGGGGATATGTGCTGCGCTCACCAGTGCAAATGTGCAACGCGGCAGTAAACCACTTGGATAACCACT
---------------GCTA--------------CGCGTCCCCGGCGCAAAGCCTCTATATATTGGCCTGCCGGGGGCGAC
GCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACCATAACTGGAA-GCAGAGAGCTCGGTCGAC----------TCA
GCAAGGAGCAGAGCAGGAGCTAGGTAGCCGCCATGGCGTTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCG
TGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGTGGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCG
CGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGCATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCC
AGGGCCATCCCCATCTAATCCTAAGCTCATCCTAATCTAATCCCTTCC--------TGTATGT----TGTAACCTGGTCA
TTCCGCCTGAGTTGTGTGCATGATTGATGAAGAAGATT-CAATAAAATGGGTG--TTGT-TTGTGTTTGTCTTGTAATCT
AAGGCATTTGCAGTGTCTAT--GCTGTGTGAGGAGTTTGCTAGAAATTTGGTTAGTG------GATCGCTGGGTTAACT-
GACTGAT--------ATAGGAGTTCCAGATACATGTTA--ATATAGCAGAGGCCAACGCACGAGAGTCGTTCTCATCAAT
ATTATTCTCGTCTCCCATCTTTTTTTTTT-TGATGTGAATAGCAGAAGCTCTGCCTTTGCATCATAGA------------
------------------------------GCAAAGGAAGTATTACAGAATACATTCATGGCCAAAACACCCACGTATAA
TAGCAGTACTGTTAAGTATATTTGTGTTGCATGTATTATGTATATTATGGCCCACGTCTTAGTCATGTATAGTTGAGGTT
AAGGTCCTGCCTATACTTATATATACGTGCACCGGCACCC-ATCAATACAATGAATATTGTATTGCCAAACCGTCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGCCCTGCCTCTCCTCCCTACCGGTCGCTGCCTCCTCTTCTTCCCGCAGCCGCCGCACGTCACCGCCG
CCGCTGCTCCCAACCACCACCGAAACCCTAACCCGCCGCGCCACCCCACCCCGCCGCGCCAATGGACTCCCCGGGCTCCT
CCACCACCCGCTCGTCGAACCCCTTCGCCGGCCCCGAGCCCTCCGCCTAGGCCATCCGTGACC
>chr5A_824
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-------------------------------GAATCCCATACGTGAGGGCAGCACCAGAAGGCTCCAAGGGCCAAACAGA
GACACGTCTGAGCTGGGGATATGTGCTGCGCTCACCAGTGCAAATGTGCAACGCGGCAGTAAACCACTTGGATAACCACT
---------------GCTA--------------CGCGTCCCCGGCGCAAAGCCTCTATATATTGGCCTGCCGGGGGCGAC
GCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACCATAACCGGAAAACCGAGAGCTCGGCCGACAAGCACAGATTCA
TCAAGCAGCAGAGCAGGAGCTAGGTAGCCGCCATGGCGTTC---CCGGCGTGCGTGCAGTGCGGGACGAGGGAGAACCCG
TGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGTGGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCG
CGGTGGTGTACCTGTTTCGCCACCGCAAGGGCCGCCGCATCATGGGACATCCCTCCAGGGTCGTCTACCCGCGCGTCTCC
AGGGCCATCCCCATCTAATCCTAAGCTTATCCTAGTCTAATCCCTTCC--------TGTATGT----TGTAACCTGGTCA
TTCCGTCTGAGTTGTGTGCATGATTGATGAAGAAGATT-CAATAAAATGGGTG--TTGT-TTGTGTTTGTCTTGTAATCT
AAGGCGTTTGCAGTGTCTATATGCTTTGTGAGGAGTTTGCTATAAATTTGGTTAGTG------GATCGCTGGGTTAACT-
GACTGAT--------ATAGGAGTTCGAGATACATGTTA--ATATAGCAGAGGCCAACGCACGAGAGTCGTTCTCATCAAT
ATTATTCTCGTCTCCCATCTTTCTTTTTT---ATGTGAATAGCAGAGGCTCTGCCTTTGCATCATAGGGCAAAGGAAGTA
TTACAGAATACATTGCCTTTGCATCATAGGGCAAAGGAAGTATTACAGAATACATTCATGGCCAAAACACCCACGTATAA
TAGCACTACTGTTGAGTATATTTGTGTTGCTTGTATCATGTATACTGTGGCTCACTTTCTAGTCATGTATAGTTGAGGTT
AAGGTCCTGCGTGTACTTATATATACGTGCACCGACACCC-ATCAATACAACGAATATTGTATTACTAAACCGTCTCTCT
ACATGGTATCATCATTTAGGAATATTGTATTACTAAACCGTCTCTCTACATGATATCATCATTTAGGTCTCTGCACTAGG
GTT---------------CGCCGCCGCGCCCTCTCGCGCGAGCCGCCGTTGTCGCT----------------GCCTCACC
CCGCCGCCGCCGCGCCCTTCCCCCGTCACGCTGCCGCCGCCCTGTGCCGC------------------------------
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----------CCGCTTCCGCCTCCTGCAGCGCCGACCCGCCACCGCCGCGCGCCTCCTGATCGTGCCACTGCCGCCCCGT
CGC-----------------------------------------------------------------------------
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-------------GCCCTGCCTCTCCTCCCTACCGGCCGCTGCCTCCTCTTCTTCCCGCAGCCGCCGCACCTCACCGCCG
CCGCTG-TCCCAACCACCACCGAAACCCTAACCCGTCGCGCCACCCCACCCCGCCGCGCCAATGGA--------------
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>chr5B_895
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---------------------------------------------GTGCAAGTGTGCCGTCAACCACTTGGATAACCACC
---------------GCTACCCGTACAGCTCCACGCGTCCCCGGCGCAAAGCCTCTATATACTGGCCTGCCGGC-GCGAG
GCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACCATAACTTGAA-ACAGAGAACTCGGATTCGGCAAGGAGCTTGC
T-----AGGTTA-----------------GCCATGGCGTTTGTGCCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCG
TGCCGGTGCAAGTTCATTGGGCCCACGCTGGGGTTCCTGGCGTTCGTGGTGACGCGGCGTCATAGAGTGGCCGGTGGGCG
CGGCGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGCATCATGGGACACCCCTCCAGGGTCGTCTACCCGCGCGTCTCC
AGGGCCATCCCCATCTAATCCCAAGCTCATCCTAATCTAATCCCTCCCTTCCTGTGTGTATGT----TGTAACCTGCTGC
----------GTT-TGTGCATGATTGATGAAGAAGATTTCAATAAAATGGGTG--TTGTTTTGTGTTTGTCTTGTAATCT
AAGGCGTTTGCAGTGTCTAT--GCTTTGTGAGGA----------------------------------------------
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>chr5D_895
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---------------------------------------------GTGCAAGTGTGCCGTCAACCACTTCGATAACCACC
---------------GCTACGCGTACAGCTCCACGCGTCCCCGGCGCAAAGCCTCTATATACTGGCCTGCCGGC-GCGAG
GCCTCCTCCATCACCAACAGCCAGAGCATTCGTCCACCATAACTTGAA-ACAGAGAGCTCGGATTCGGCAAGGAGCTTGC
T-----AGGTTA-----------------GCCATGGCGTTC---CCGGCGTGCGTGCAGTGCGGGACCAGGGAGAACCCG
TGCCGGTGCAAGTTCATCGGGCCGACGCTGGGGTTCGTGGCCTTCCTTGTCAC-CGGCGTCATAGAGTGGCCGGTGGGCG
CGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGCATCATGGGCCACCCCTCCAGGGTCGTCTACCCGCGCGTCTCC
AGGGCCATCCCCATCTAATCCTATTCTCATCCTAATCTAATCCCTTCC--------TGTGTGTATGTTGTAACCTGCTGC
----------GTT-TGTGCATGATTGATGAAGAAGATTTCAATAAAATGGGTG--TTGTTTTGTGTTTGTCTTGTAATCT
AAGGCGTTTGCAGTGTCTATATGCTTTGTGAGGAGTTTGCTACAAATTTGATTAGTAGTAGTAGATCGCTGGGTTAACTT
GACTGATTGGGCCAAATACGAGTTCGAGATACAGAGGTTCATATAGCAGAGGCCAGCGCACCAGAGGCTTTCTCGTCAAT
ATTA----------------------------------------------------------------------------
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>chr5A_1089
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------------------------------CCATGGCGTTC---CCGGCGTGCGTGCAGTGAGGGACCAGGGAGAACCCG
TGCCGGTGCAAGTTCATTGGGCCCACGCTGGGGATCCTGGCGTTCGTGATGACACGGCGTCATAGAGTGGCCGGTGGGCG
CGGTGGTGTACCTGTTCCGCCACCGCAAGGGCCGCCGCATCATGGGCCACCCCTCCAGGGTCGTCTACCCGTGCGTCTCC
ACGGCCATCCCCATCTAATCCTATTCTCATCCTAATCTAATCCCTTCC--------TGTATGC----TGTAACCTGGTCG
GTCTGCCTGAGTT-TGTGCATGATTGATGAAGAAGATTTCAATAAAATGGGTGTTTTTTTGTGTGTTTGTCTTGTAATCT
AAGGTGTTTGCGGTGTCTATATGCTTTGTGAGGAGTTTGCTATAAATTTGATTAGTAGGAGTAGATTACTGGGTTAACT-
GACTGATCGGGCCAAATACGAGTTTGAGATACAGAGGTTCATATAGCAGAGGCCCGCGCACCAGAGGCTTTCTCGTCAAT
ATTA----------------------------------------------------------------------------
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>SNPs
-S--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----
S-----------S-----SS--S-------------------------------------SS--------S--S------
-------------------S------------------------------------------------------------
SSSSSSSSSSSSSSS--S-------------------------------S------------------------S-----
--------------------------------------------S-----------------------------------
-----------------------------S--------------------------------------------------
---------------------------------------------------------------S----------------
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-----------------------------------------------------------------------S--------
------S-------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
-S------------------------------------------------------------------S-----------
-----------------------------S--------------------------------------------------
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-------------------------------------------------S----SS----------S-------------
S---------------------------------------S-----------S---------------------------
------------------------------------------------------------S---S---------S-----
---SSSSSSSSSSSSSSS------------------------------S------SSSSSSSSSSSSSSSSS---S----
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-----------------------------------------S----S--S-------------S-----S----------
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-------------------------S-------S---------------------S------------------------
---------------------------S-------------------S---------------
>forward_132
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--------------------------------AATGAGTGGTGATGGAGGCG----------------------------
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>reverse_2061
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------------------------------------------------------------CTTTCGGTCTCTGCCCTAGG
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