>input_sequence_80786
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----ATGTCTAACCTGATGGCCGCCGGCTTTTGGGTGGCTGTAGGGGCGGCGGCGATACTCGGGAAGCACAGGTCGCCGG
CAAGAATTCAGCAGGAACGGCTTCTAGACCGGGACCTAGAATCAAAGAAGAAGGAACTGCATGAACTAATCCGTGG---G
CCAAGGACAGACATGGTGAGACAGTTTTTCATCGTGATACAGTAACAGTACTCCTACTTGTTGTCACGCATTCTACTTAT
GGCTAATCCGTGG-----------------GTGGTGGCTGCAGGGGCAGGGACGATCCTCGAGAAGCAGAGGTCGTCGAC
CCAGTAATCTGGAACGGATTAAGCTGCAGGCAGATTTGAAGTTGAAACAGTTATTTGAACAACTTCGCCAAGCAGAGGCC
AACCGGGTGCTCAAGGAACCGGCAACTCACTGGCCGTTCGATTAA-----------------------------------
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>chr3D_1_TraesCS3D01G096400
GTGGCGTTCCAGGCCATGGTGTCCATCGCCACGATCGGGCTCTACATCGCGTACGCGCTGCCCATCTTCTTCCGGGTGAC
GCTGGCGCGGAAGCACTTCGTGCCGGGACCCTTCAACCTGGGGCGCTACGGCGTGCTGGTGGGGTGGGTGGCCGTGCTCT
GGGTGGTCACCATCACCGTGCTCTTCTCGCTGCCGGTGATGTACCCGGTGACCAGGGACACGCTCAACTACACGCCCGTC
GCCGTCGGCGGGCTCTTCATCCTCGTCCTGACGTCGTGGGTCGTCAGTGCCAGGCACTGGTTCAAGGGACCCGTCACCAA
TTTGAGCGGCTAGCTTCACGTACGTGTGTTCACGGAACGCCATGGAGGATTAGTTGTACAGCTGTAGGCTGGTTGTACCT
GAGATTCTTATAAACAGAGGCTCGTAGAATACAAAGGCTTTCCACAAATTTAGAGATCTTTTACGTGGGTGCGCGTGGAA
GGTGGAACAAATCCTGAACATCTTAATTACATGTCACTGTCATGAGACACAATTTAATTTTAGAAAGAATAGAGCTATGA
AAGAACACAGATTTAGTAAGGTCAACTACTCCTAACAAACTCTTATATAAGGTTTCCACTCATGTGTTGTTGTGCAAGCT
AGACCACTGTTTGGGTCTGACGAGCTAGAGTTAAGCACATTGGACGGCTGAAGCCCGCTCCTGTGTGGCTGTCTGTGGCT
GTCTGCGTGCGTACACGGCTGAGCGATGCTCGGCTTCTTTCATGTCCGAGAGGAACACGAGTTGGTGCAGGCAGAGCCGG
GAGGAGGAACTCTGATCGATTCGAACAAGAAGACGACGAGTCGGCGACTGACTCGGATCGTTATGTACCGCCGATCGCCT
ACATAATTCATAAGCCGTACGCCCTGACCGCCTAGC-------------------------------------TCTCATC
GATCAACATCACGACCAACGCCTTCGAGTTCTG-----------------------------------------------
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----------------------------------------GCCGGCCAAGAAACCCCAAGACAGAGACAGACAGGCAGGC
AGCCATGTCTAACCTGATGGCCGCCGGCTTTTGGGTGGCTGTAGGGGCGGCGGCGATACTCGGGAAGCACAGGTCGCCGG
CAAGAATTCAGCAGGAACGGCTTCTAGACCGGGACCTAGAATCAAAGAAGAAGGAACTGCATGAACTAATCCGTGG---G
CCAAGGACAGACATGGTGAGACAGTTTTTCATCGTGATACAGTAACAGTACTCCTACTTGTTGTCACGCATTCTACTTAT
GGCTAATCCGTGG-----------------GTGGTGGCTGCAGGGGCAGGGACGATCCTCGAGAAGCAGAGGTCGTCGAC
CCAGTAATCTGGAACGGATTAAGCTGCAGGCAGATTTGAAGTTGAAACAGTTATTTGAACAACTTCGCCAAGCAGAGGCC
AACCGGGTGCTCAAGGAACCGGCAACTCACTGGCCGTTCGATTAACTGAGCCTACATACGTACGGCTAGAGATTAATTGG
TGTTCCGTCCATGTTTAATTTTTTTTACCAATTTGTATATGCTAATATGCATGATATGATATACCTTGCTTTACTTTATG
CACAAATAAATCCTGTTGCATGTTGGCTTCCTTTGTAGGAACGCGTTGAGTAGAACTTTCGAACAGCGTGAAGTGTGATC
GGAACTACTTAATTTAGGCTGGTCATAGTGGGAATAACATAGGTAGTAAGGGCATCTTCAATAATTGTAAGATAGTTGTT
GGTAGACTTTGCCACATAGGATTTTTGATGATGTGCCATATAATAAATGAGGAATGAGAGAAAAATTGTATGTACATGAA
CCAACACCCCTTACACAAGCTCCAATGTAGAATGAGAGAGCACCTTATTTATTACCTCACCTCCTATTGAGCAAACTAGA
TAGAACCCATTGAAATTGTTGTATGTTAAGATGTTGGTTGATGACATGACATATTTTACCAACAAGCTAACATACAAACT
GTTGGAAATGCCCTAACATCCATGCCACATAAGCAAAAAAGATGATGTGTCAGGTAATTAATGAAGAGAGAGGCAAATAA
AGTAACGTAATATGTTACTCCCTTCTTTCCTGTTTATAGGGCTTATCTCAAAATTTTAGTTTTTTCGTTTTATAAGGCTC
AATTTAGCTGTTCCCCATCACATGTTCAGATTCCAAGGTGCATTAAATCATTGCATGCAATTATTAAGAGAAAATTGACC
AATGCATGTACTTTATGCATGCATGCATTGCAATTAATGCATTGATAAACATAATTTTTTGAGGAAAACAAGAGCATTAA
TTAGGTGCTTTTGCAAACTACAAAAAGTATTCCACCACTCACCATCTATCTTGGCTGGTGAGATTTTTGAATTGAGCCCT
ATAAACCGGAAAGGAGAGAGTACCATCACATAGCGGTTCTCAATGCAAAATGAGTCTACAAAGTAATAATTAAGGTGGTG
CATGA
>chr3B_606
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---------------------------------------------TATAAGGTTTCCACTCATGTGTTGTTGTGCAAGCT
AGACCAATGTTTGGGTCTGAGGAGGTAG--TTAAGCACATTGGACGGCTGCGGCCTGCTCCTGTGTGGCTG--------T
GTCTGCGTGCGTACACAGCTGAGCGATGCTCTGCTTCTATCATGTCCGACAGGAAGACGAGTTGGTGCA----GAGCAGG
GAGTTGGAACTCTGATCGATTCGAACAAGAAGAG---GAGACGGCGACAGACTCGGAGCCGGGGTCGCGTACGTAAT---
---------ATAAGCCGTACTCACCGGCGGTCTAGCTGCTACGATTCCATCCGGTGATCGAGATTTCTTCGTTTCCGATC
GATAGACATCGCGACTCAGGCGAGAGGGAGCGATCGCGCTTCAGTTTTGGCCAGGTACTGCAAGAACTCAGATCGTATAT
GTTTCTCCGCTTCATCATCCCCATTGCCGGCCAATCTGAGTTACTCCTTCCTAGCTAACTTGTTTTCTTGCGTTCGTATC
GTTTCAGCGTCGTACTTAAAGCTCATCGGTAGCGCCTGTTGCCGACCAAGAAACCCCAAGACAGAGACACACAGACAG--
--CCATGTCTTACATGATGGCCGCCGGCTTTTGGGTGGCTGTAGGGGCAGCGGCGATCCTCGGGAAGCACAGGTCGCCGG
CAGGACGTCAGCAGGAACAGCTTCTAAACCGGGAACTAGAATCA---AAGAAGGAACTGTATGAACTAATCCGCGGTGGG
CCAAGGACAGACATGGTGAGACAGTTTTTCATCGTGATACAATACTCCTACG--TACTTGTTGTCATGCATTCTACTCAT
TTATGGTTATAATCGGCGGGTGTCGGCTTTGTGGTGGGTGCAGGGGCTGGGACGATCCTCGAGAAGCAAAGGTCGTCAAC
CCAGTAATCTGGAACGGATTAAGCTGAAGGCAGATTTGAAGATGAAACAATTATTTGAACAACTTCGCCAAGCAGAGGCC
AACCCGGTGCTCAAGGACCCGGCAACTCACTGGCCGTTCGATTAATTGAGCCTACATA----CGGCTAGAGTTTAATTGG
TGTTCCGTCCATGTTTTTCTTCCCAATATGT-------------ATATGCATGATATGATA-------------------
--------AATCCTGTTGCATGTTGGCTTCCTTTGTAGGAACACGTTGAGTAGAACTTTCGAACAGTGTGAGGTGTGGTC
GGAACTACTT----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
------S-------------S---S---SS--------------------SS---S---------------SSSSSSSS-
----------------S--------------S------S----------S-----S-------------SSSS----S--
---SS----------------------------SSSS---S-------S--------S-SSSSSSSS-SSS--SSSSSSS
SSSSSSSSS-----------S-S-S-S-S-S--------------------------------------------SS---
---SS-----S----SS-S--SSSS-S-SS-SS-----------------------------------------------
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--------------------------------------------S------------------------S----S---SS
SS--------S--S----------------------------------S--------S----------------------
--S--SS-----------S-------S-------S---------SSS------------S-------------S------
-----------------------------------------S--SSSS---SSS------------S----------S--
SSS-SS-SSSSSS------------------------S---------S--------------------S--------S--
--------------------------S--------------S-------S------------------------------
----S------------S---------------------------S------------SSSS---------S--------
----------------SSS--SSSSSSSSSSSSSSSSSSSSSSS-----------------SSSSSSSSSSSSSSSSSSS
SSSSSSSS----------------------------------S-----------------------S----S-----S--
----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_187
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-------CACCATCACCGTGCTCTTCT-----------------------------------------------------
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>reverse_1299
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------------------GGCTTCTAGACCGGGACCTA------------------------------------------
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>forward_877
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---------------------------------------------------------TCGTTATGTACCGCCGATCG---
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>reverse_2169
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--------TGCCCTAACATCCATGCCAC----------------------------------------------------
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