>input_sequence_80784
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--------------------------ATGATGTGGGGCGTCGCCGCCGCCGTCGCCTCCGCGGCCGCCGTCGCCGTGGCC
TCCGTCGCCGAGCTCCTCGCCTGCGACTGCGCCCCCACGGAGCCCGCCGCCGCCGTCGCCGTCGCCGTCGGCAGATGCGA
CGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGCCTCCT---------CC----------TTCTCCCCCAATCCCCCC
CTCCCTCCCG-----AAGAATCTCCTCCTACGATAGCAATCCGGTCTTGATTTTGATTTGGGATCACGACGG------AC
GGCTTCTTCAAATTTGAAACTGCTCTCTTCTTACGCGCTCTGCTTTCCGCAGGAATCCCCGGCGTCGAGCGGGGGGAGCG
GCGGCCG------GGACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGCTCGTCACGGCGCACCGC
TGA-----------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G481100
TTAAACGAGAAAGAAGGGAACTTGTGTTCCCTTGAGCAAATTGCGATTGTACTTTGAAAAGTATGGTCCCCATGTCATGG
TTCATTCTTGTTTGTGCTTTAGAAAGCTAGGATTACAAGGACTAGAGTTGTATTTTATTTATAAAAAGGAGTAGATGGCC
CTTTAGTATATTGTCGTTAAATTTGTCCCTTTCATTTTACAAATTTGTTACCGGCGACATCTACACGCCCATCCAACAGA
GGGGCAAGCTATTAATCACACAGATGAGAAAATTCGACACGTCATACAAGCCGTTGACCTCCGCCCCGTTCTTGTCGATC
GAGAACAGGTTGTCACCCTGTTGGCTAGGATCACAAGAAGTGAGCTGGCCCACCCGGGTTCGAGTCCTAAGCGGCCTGTT
GGTGCTTAGAGTTTTCATCTATAAAAATATACTTGCAAGGGTTAGTCCTGAGTGGTCTTGTTTTTTTTTTGGTCGACCCG
CTCGCTGACGTCAGAACAGCCACCTCCGGTTC-CGGCCTTCCCTCTATCTCCACACCCTCCCGGGCACCGACGACCATCT
CCCGCACTCGTCAACCCTTTGCCTCGCCTCAGCGTAGCGACGCCGCAGTCCCCGTCTGGCCGTCG-TCTCTGACTTGTTC
CTGGCTCGCGCTCACG----------------CCGACTCGGTGCTGCGCGTTTGTTCAGCGCGGATTATCAACCGACGCG
CCAAAAATTTCCGGACACCTCGCTAATGGCAAAGCGGGCCCATCCGCCAGCGAAATCCACACCCCGTCCGTCCGTCCGTT
CTCCCGCCGCCGCCCGCGTCGACCGCGCCGCGCGGGCCTTTCCCGGACACGGCTTCAACATTTCAATCCCGTTAAATTCC
GCGCTCAAGTCCGGCCGCAGACAGAC---------------TATAAAAAATGCTACGCGGCTAGCCGTCACCTCCATTCC
AGCCTGCCCTGCCCAAGCAAAGAATC----------------------------CCGTCCCCACCAGCCAG-----GAGG
AGGGGAAAGCGGCTGCTGGATCGACGATGATGTGGGGCGTCGCCGCCGCCGTCGCCTCCGCGGCCGCCGTCGCCGTGGCC
TCCGTCGCCGAGCTCCTCGCCTGCGACTGCGCCCCCACGGAGCCCGCCGCCGCCGTCGCCGTCGCCGTCGGCAGATGCGA
CGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGCCTCCT---------CC----------TTCTCCCCCAATCCCCCC
CTCCCTCCCG-----AAGAATCTCCTCCTACGATAGCAATCCGGTCTTGATTTTGATTTGGGATCACGACGG------AC
GGCTTCTTCAAATTTGAAACTGCTCTCTTCTTACGCGCTCTGCTTTCCGCAGGAATCCCCGGCGTCGAGCGGGGGGAGCG
GCGGCCG------GGACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGCTCGTCACGGCGCACCGC
TGAAAA--------TTCCCCCGGGGAT--TCTTTCCAGTCGTCTTCTTCGTGCGATTCGCGGGGAGAGGCTGGCTGCTAC
CCTATTAATTCGGCGATTGGCGGCCAACGCGCCGCCAGATTTTTGCT---ACTAGGACAAATTGAGGTTTTTCTTTCTTT
CC-------------------------TGACGATTATCGTCCCTATTGTTGTTGAGTGATGCGATTGAATCGGAACCTTC
AAGCGGGCATGTGATATGGTGAGCGTATGTACTTGTGCTAGCAT--TTGCTTCTTCACCCGATCTGTTATGCAAGCATGA
TAGTATGATATGAGATGATTGATGGCATGATTTCAGCTCCAAACTT-GCCATTCTCATGTATGGTAGTGGTAGGCCTGGT
GTCG-CTGCTTGTGGTTGGCCTCCTTCCGGAATTGTCC-TTTTCCCCTCTTTGCTGCACACATATCACATGGCTCAATCT
TTGCACCGCATCCTGTCCATGGCTTTTGGGGTAAAGTTAGTAG---ATGGAGCCCCTGGATGTATGGTAATGATTATGCT
GATTATGCCTCGCCAAATTAGAACTAGTTTTAAAGCAAGGAGAGTGGTGGTACGTGCTCGT---------ATGATGTGGC
TCCTTCCTTACCGTCCATTTTTCCTTGCAGATTTGGCTAACTATCTCCGGCTCATCTTGACTTGTTT--TCGTCTTCTAC
CACAAGTAGAATTCGTGTATTGGAAATACTTGTTATCAAAATGAATAAAAAGATAGTTCTAGATACATCTATTTTTGTCC
ATTTTGATAACAAGTATTTTCGGACGAAGCGAATATCATATTACGTACTACCTTCGTTCCAAATTACTCGTCGTGGTTTT
AGTTCAAATTATAATCTTAAGAGGGAATAAATGTGGAATTATAATGTAGTAACACAACTCTACTCACCATCATAGGATTT
GTCTCCCTCTCAGTTCACACACTGACCCAATACAAAATATTATGAGTCACAACCCATGAATAAAATCACACGAGAACTCA
AGATTAATCTATGGAAGAAA
>chr2B_499
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------------------GCCACCTCCGCTTCTCGGCCTTCCCTCTATCCCCACCACCTCCCGGG-ACCGACGACCATCT
CCCGCACTCGTCAACCCTCTGCCTCGCCTCGGGGTAGCGACGCCACAGCCAGCCGCGTCGTCCCCATCTCTGACTTGTTC
CTCGCTCACGCTCACGCCGACCAGCGCGTCGTCCGACTCGGTGCTGCGCGTTTGCTCAGTGTGGCTGACCAACCGACGCG
CCAAAAATTTCCAGACACCTCGCTAACAGCAAACCGGTCCCATTCGCCAGCAAAATTCACACCCCGTCTGCC--------
CTCCCGCCGCCGCCCGCGTCGGGCCA----------CCTTTCCCGGATGCGGCTCCGGCATTTCAACCCCGTTAAATTCC
GCGCTCAGGTCCGGCCGCGCCTTCCTTCCTGTAGCGCCGTATAAAAAAAGCACTACGCGGCTAGCCGTGACCTCCATTCC
AGCCTGCCCTGCCCAAGCAAAGAATTCCCAGCCTTCACACCTCTCCCCCTCGCTCCGTCCCTACCAGCCAGAGGAGGAGG
AGGGGAAAGTGGCTGCTGGATCGACGATGATGTGGGGCGTCGCAGCCGCCGTCGCCTCCGCGGCCGCCGTCGCCGTGGCC
TCCGGCGCCGAGCTCCTCGCCTGCGACTGCGCCCCGACGGAGCCG------CCCGCCGCCGTCGCCATCGGCAGATGCGA
CGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGCTCCCCCCTCACCTGCC----------TTCTCCCTAATTCCTCCC
CTCCCTCCCTCCCCAAAGAATCTCCTCCTACGATAGCAATCCGCTCTCGATTTTGATTTGGGATCACGACGGC-ACGGAC
GGCTTCTTGG--------ACTGCTCTGTTCTTACATGCTCTGCTTTCCGCAGGATTCCTCGGCGTCGAGCGGGGCCAGCG
GC------------GACGACAAGTTCGCGCCGCGGTTCGACGGGCTGCGCTTCATCGAGACGCTCGTCACGGCGCACCGC
TGAAAA--------TTCCCCCCTGCGGACTCTTTCCAGTCGTCTTCTTCGTGCGATTCGCGGGGAGAGGCTGGCTGCTAC
CCTATTAATTCGGCGATTGGCGGCCAACGCGCCGCCGAATTTTTGCTACTACTAGGACAAATTGAGGTTTTCCGTTTCTT
TTTCTCCCTTTTGTTTCTCTTTGCTGATGACGATTATCGTCC-TATTGTTGTCGAGTTATGCGATTGAACTGGAACATTC
AAGTGGGCATGTGATGTGATGAGCGTATGTACTTGTGCTAGCAT--TTGGTTCCTTACCCGATCTGTTATGCAAGCATGT
TAGTATGATATGAGATGATTGATGGTCTGATTTCAGCTCCAAACTT-GCCATTCTCATGTATGGTAGGCCTGC------T
GTCC-CTGCTTGTGGTTGGCCTCTTTCCGGAATTGTCCTTTTTCCCCTCTTTGCTGCACGCATATCACATGGCTCAATGT
TTGCAGTGCATCCTGTCCATGGCTTTTGGGGTAAAGTTAGTAG---ATGGAGCCCCTGGATGTATGGTAATGATTATGCT
GATTATGCCTGGCCAAATTAGGACTAGTTTTAAAGCAAGGAGAGTGGTGGTACGTGGTCGT---------GTGATGTGGC
TCCTTCCTTACCGTCCGTGTTTCCTTGCAGATTTGGCTAACGATTTCTAGCTCATCTTCACCTGTTT--TCGTTTTCTAT
CACAAGTAGAATTCGTGTAT------------------------------------------------------------
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>chr2D_823
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----------------------------------------TCCCGGACACGGCTCCAGCATTTCAACCCCGTTAAATTCC
GCGCTCAGGTCCGGCCGCGCCTTCCTTCCTGCAGCGC--TATATAAAAAACACTACGCGGCTAGCCGTCACCTCCGTTCC
AGCCTGCCCTGCCCAAGCAAAGAACC------------------CCCCCTCGTGCCGTCCCTACCAGCCAGCCGCCG---
--------------------TCGACGATGATGTGGGGCGTCGCAGCCGCCGTCGCCTCCGCGGCCGCCGTCGCCGTGGCC
TCCGGCGCCGAGCTCCTCGCCTGCGACTGCGCCCCGACGGAGCCC------GCCGCCGCCGTCGCCGTCGGCAGATGCGA
CGAGTTCCTCCTCCGCCAGCGGGTACGGATCACGGCCTCCT---------CCCTCACCCGCCTTCTCCCTAAATCCTCCC
CTCCCACCCTCCGCAAAGAATCTCCTCCTTCGATAGCAACCCGCTCTCGATTTTGATTTGGGATCACGACGGCGACGGAC
GGCTTCTTGG--------ACTGCTCTGTTCTTACATGTTCCGCTTTCCGCAGGAATCCTCGGCGCCGAGCGGGGCGAGCG
GCGGCTCCGGCACGGACGACAAGTTCGCGCCGCGGTTCGACGGCCTGCGCTTCATCGAGACGCTCGTCACGGCGCACCGC
TGAAATCCCCCTGTTTCCTCAGGGGAT--TCTTTC---------TCTCCGTGCGATTCGCGGGGAGAGGCGAGCTGCTAC
CCTATTGATTCGGCGATTGGCGGCCAACGCGCCGCCAGATTTTTGCT---ACTAGGACAAATTGAGGTTTTTGGTTTCTT
TTCTCCCCTT---TTTCTCTTTGCCGATGACGATTGTCGTCC-TATTGTTGTTGAGTGATGCGATTGAATTGGAACCTTC
AAGTGGCT------TGTGATGATTGTATGTACTTTGCCAGCGCTGGTTCTTTACCTACCTGATCCGTCGTGCAAGCATGG
TATGGTATGGT----------ATGGTATGATTTCACCTCCAAACTTTGCCATTCTCGTGTGTGGTAGGTCTGC------T
GTCCTCTGCTTGTGGTTGGCCTCGTTCCGGGATTGCCCCTTT-CCCCACTTTGCTGCACGCGTATCACACGGCTTGATGT
TTGGGCTGCATCCTGTCCATGGCTTTTGGGGTGAAATTAGTAGCAGATAGGGCCCCTGGATGTGTGGTGATGATTA--CT
GATTATGCTTGGCCAAACTAAGATC--TTTTTAAGCAAAGATAGTGGTGAGAAATGGGAGTACTAGTATGATGATGTGGC
TCCTTGCCGTCCATGTCTGCTTCCCTG----TTTGGCTAACCAGTTTCACCTCATCTTTACTTGTTTCTTTGTGTACCAC
AACAAGTAGAACTCGT----------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS----------S--------------------S----SS---------S--------------
------------------S-----------S-S-----------S---S-SS-SS-SSSSSSS-S---------------
--S----S----------------------------------------------S----S-S--S-S-S-----------
------------S-------------SS-----S---S-----S-------S----S-----------S-S-SSSSSSSS
---------------------SS-SSSSSSSSSSSS------------------S--S--------S-------------
-------S----------SSSSSSSS------------------------SS----------------------------
-------------------------------------------------------------S------------------
---------S---------------------------------S------------------------------------
----S------------------------------S---------SSSSSS----S------------------------
---------------------------------------------------------------------SS-----S---
---------S---------------------------------S---S--------------------------------
--------SSSSSSSSSS--------S-------SS----------------------S---------------S-----
-----SS-------------------------------------------------------------------------
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-------------------------------------------------------------------------S--SS--
SS----------------------------------------S---------------------------S---------
---S-----------S--S------------------------------S---S-S-----------------------S
-------------------------S-----------------------------------------SSS-SSSSSSSS-
---S-------------------S-----------------------------------S------------------S-
------S-------------------------------------------------------------------------
----------S----------S----------------------------------S-----------------------
----------------S-S----------------------S--S---S---------S--------------S------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_412
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------------------------------------------------------------------------GGCCTGTT
GGTGCTTAGAGT--------------------------------------------------------------------
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>reverse_1919
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------------------------------------------------------------------------------GT
GTCGCTGCTTGTGGTTG---------------------------------------------------------------
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