>input_sequence_80754
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-----------------------------------------------------------------------ATGGCGACA
GCGGCAGCCGGCGGCGGGAGGGGCAAGCCGAAGGGGAGCAAGTCGGTGTCGCGGTCGGTGAAGGCGGGCCTGCAGTTCCC
GGTGGGCCGCGTCGCCCGGCACCTCAAGGTCGGGCGCTACGCGAAGCGCGTGGGCGCGGGCGCGCCCGTCTACCTCTGCG
CCGTCCTCGAGTACCTCGCCGCCGAGGCCCTGGAGCTGGCCGGCAACGCGGCGCGCGACAACAAGAAGACCCGGATCTCG
CCGCGCCACATCCAGCTCGCCGTCCGCAACGACGAGGAGCTCAGCCGGCTGCTCGGCGGCGTCACCATCGCCGCCGGCGG
CGTCCTGCCCAACATCCACTCCGTGCTCCTCCCCAAGAAGGCCGGCAAGGGCGCCGGCACCGGCGGGTCCGCCTCCCAGT
CCCAGGAGTTCTAG------------------------------------------------------------------
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>chr6B_1_TraesCS6B01G443800
TTTTCCACTCTCTTAGCCCTGATTGTTGTCTCCATCACGAATAGCAGGGCAGGAACTTCTTGCTTCACAATACTGCGAAG
CTCGCAAACTATAGAATATGGGATGTCATAGAAACAAATGTATGACTATCTTCGCAAAAAAAATGTGTGAGTATATTGGT
TACTATAACATCTTATATTATGAGACGGACTCCCTCCGTCCCATAATGTAAGACGTTAAACGTTTTACATTATGGCATGG
AGGGAGTAGAAAATTACTACTCCCATTTATATATTTATTCTGGACAAAAAAACAATTCTTTTGTGCAAATCTACTTTTTT
TTTGCACATTGTAGCTTTTG----------------------------TGTTTTATTCACACGAGAAGCTTGACACCCAT
AT-GCTGTTTCATTTTTATTTTGCGGGGAATATGCTGTTTCAAGTGGTTGAGAAAAAAAACAGAGAAAAAAAAACGCTCG
TGCGCGGATAGCGAAAACGCAGATGA-TTCCCTCCAAATGAAACCCCGTTTTTCGAAAGTTTCGCGTCTCCCTCCAAATC
CCGCGATCCGCGCCAAACCCAAA-TCTCCTCCCTCCCCGCACCGCCCGATCCGACGGCATCGCAACCCTCCACGTCACCG
ATCCGCGGCCTCGCCCTCCCCACCAATCACGCGCGGCCCCCCTCCACCATATAACCCACCCCCGCCCCCGCCAATCCACC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCGCTCCCTCCATCTCTCCGGCGACCACCGTAGTACCACCCTACCCCGTCCTCCCCACTCCAGCGATGGCGACA
GCGGCAGCCGGCGGCGGGAGGGGCAAGCCGAAGGGGAGCAAGTCGGTGTCGCGGTCGGTGAAGGCGGGCCTGCAGTTCCC
GGTGGGCCGCGTCGCCCGGCACCTCAAGGTCGGGCGCTACGCGAAGCGCGTGGGCGCGGGCGCGCCCGTCTACCTCTGCG
CCGTCCTCGAGTACCTCGCCGCCGAGGCCCTGGAGCTGGCCGGCAACGCGGCGCGCGACAACAAGAAGACCCGGATCTCG
CCGCGCCACATCCAGCTCGCCGTCCGCAACGACGAGGAGCTCAGCCGGCTGCTCGGCGGCGTCACCATCGCCGCCGGCGG
CGTCCTGCCCAACATCCACTCCGTGCTCCTCCCCAAGAAGGCCGGCAAGGGCGCCGGCACCGGCGGGTCCGCCTCCCAGT
CCCAGGAGTTCTAGAGCGCCAGAGATCCGATGAGTGGCGTGGCGTGGCGTGGTGGTGTGATGCTTTTAGGTTGGTAGATT
AGTTCTTCTTGGCCAGCGTTCTTGTTGGCGCGTGTATCGAGGGTGGATCTGGTTGGAATGGAATGCTTGCAATCTGTTTC
TTGTCTGTTTGGATGGAATGCGC---------------------------------------------------------
-------------------------------------------------TCTATTTCTTTTTGCTACTTGTCGCTGCCTA
TGATTTGCGAATGTTAATCTGAATGAAACTGAAATGCTGCTAGTGTTGTTCTAATCTGAGGAATGAATGGTTCAGCAGTT
CCTGCTGCAAGGACGATTT-----TTTCACATGTTCAGCAGATCGATTCTTTTGCCCTGACAGCGTGAAATCCCTCTTGT
GGATGGATTCAGTCCAAGGTCCACCAAAATCCAACCACTGTGCAGATTGTTATGC----AACATGTTTAGTATTCTTGTT
TTTAAAAGTTGCAGCCAGGAACTTCAA-CATCT-----------------------------------------------
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-----------------------------------------------------------------------ATACAGATT
GTTTACTGAAGAACCGACAATCTGCTTACTGAAGAACCGACACTCTGTTTACTGAAGAACGA------------------
---GCACTCTGTTTACTGAAGAACGAGCACTGTTTGT--TGAGAAACTCTGTATGGAGGCTCTCCTTTCTTCGCTTTCTC
CAAATCTACTTTCAACTCATCCCTCTAGGCATGGGGAAAAGTTTACAAGAACATAATTTTTTGAGCACCCAACAACCAAC
CTT-----------------CATTCAAGTTTGTCATCTGGGAACTGGGACAGCACTCCCAGGTTGCAGATTGTAGAAACC
TGAGTAAGCGAGTCAAGAATAGTGATGATGAAAATTCGTTTTCCTTGAGTGACATATTTGACCTCTTTGTCTGCTCGCTG
GTAGACGGATAACACCTCTTCCATGGTCCTCGAGGTCGTTGAAATGCTCATCAACAACAATGACGAGTAGAATAAGTGTT
TCATC----TATGTTTGTATGTACACATTCATAGACCGCCTGTCACGGCATTGTAGGTCGAAG-----------------
-------------------ATTGGCACCTGTCGGACTACGTGATCACG--------------------------------
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>chr6A_265
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------------------------ATTTATATATTTATTTTGGACAAAGAACAA----------------------TTTT
TTTGCACATTGTAGCTCTGATATTTTTCTTTTTTGCGGGTAGCTCTGATGTTTTATTGACACGAGAAGTTTGACATCCAT
AT-GCTGTTTCATTTTTATTTTGCGGTGAATATGCTGTTTCATTTGGG-------------AGAGAAAAAAAAATGCTCG
TGCGCGGATAGCGAAAACGCAGAGGATTCCCTTCTTTAA-----CCCATTTTTCGAAAGTTTCGCGTCTCCCTCCAAATC
CCGCGATCCGCGCCAAACCCAAAATCCTCTCCCT-CCCGCACCGCCCGATCCGACGGCATCGCACCCCTCCACGTCACCG
ATCCGCGGCCTCGCCCTCCCCACCAATCACGCGCGCCCACCCTCCACCATATAACCCACCCCCGCCCCTGCCAATCCTCC
ACCAATCTCTCAGCCCCCACAATCTCACCTA-------------------------------------------------
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---------CTCCGGCCATCTCTCCATCGACCACCGCAGTACCACCCCTGCA------CCCCACTCCAACGATGGCGACA
GCGGCAGCCGGCGGCGGGAGGGGCAAGCCGAAGGGCAGCAAGTCGGTGTCGCGGTCGGTGAAGGCGGGCCTGCAGTTCCC
CGTCGGCCGCGTCGCCCGGCACCTCAAGGTCGGCCGCTACGCGAAGCGCGTGGGCGCCGGCGCCCCCGTCTACCTCTGCG
CCGTCCTCGAGTACCTCGCCGCCGAGGCCCTGGAGCTGGCCGGCAACGCGGCGCGCGACAACAAGAAGACCCGGATCTCG
CCGCGCCACATCCAGCTCGCCGTCCGCAACGACGAGGAGCTCAGCCGGCTGCTCGGCGGCGTCACCATCGCCGCCGGCGG
CGTCCTGCCCAACATCCACTCCGTGCTCCTCCCCAAGAAGGTCGGCAAGGGTGCCGGCACCGGCGGGTCCGCATCCCAGT
CCCAGGAGTTTTAGAGTACCAGAGATCTGAGTATGGCGTG----------------GTGATGCTTTTAGGTTGGTAGATT
AGTTCTTCTTGGCCAATGTTCTTGTTGGTGCGTGTATCGAGGGTGGATCTGGTTGGAATGGAATGCTTGCAATCTGGTTC
TTGTCTGCTGCCTGTGATTTGTCCATGGTAGTAATCTGAATGAAACGGATTTTGTTATGCTCTGACAGTAATTCATCATG
CTTTTGAATTCACGATTCCTCTTGTTGATGTGGTTTGGATGGGGTGAAATCTAGTTCCTTTTGGTGCTTGTCGTTGCCTA
TGATGT--GAATGTTAATCTGAATGAAACCGAAATGCTGGTATTCTATAT-TAGTCTGATGAATGAATGGTGCAACACTT
CCTGCTTGCAGGCTAGTATGAACGTTTCACATGTTCAGCAGTTTGATTCTTTTGCCCTGACAATGCAAAATCTCTACTGT
GGATGGATTCAGTCCAAGGTTCACCAA-AGCCAACGACCGAGCAGATTATTATACTTGCAACATGCTTGTTCTTT-----
-----AAGTCGCGCAGATCGTTTTACTGAAGAATGAACACTCTGTTTACTCTGAAAAACAAACACCCTGTTTACTCTGAA
GAACAAACACTCTGTTTACTCTGAAGAACAAACACTCTGTTTATTCTGAAGAACAAACACTCTGTTTACTGAAGAACAAA
CACTGTCATCTATCCTCGGCCTCACAAACTTTGCTAACATGGCTGGATGGAGGTTTTCCTTTAATCGATTTCTCCAAATC
TACTGCCAACTCATCCCTCTGGGCATGGGGAAAAGATTACAGGGAATGTAAAATGTTGAGCTAATCAATCACTCGCGCCC
AACAGCCAACCTTTAATTCATCGACCTGTCCATTCAACTGTCATCTGGGAATTGGGACAGCACGCTGGTGGTTGCAGATC
CTGAGTAAGCCAGAAACATCTTTGCAAGTCAAGAAAAATGATGATGCAAATTCATTTTCCTACACATTTTACCTCTTGTT
TTGCTCGCTGATAGACGGCAAGTCTTTCAAGAAGGGTTCCATCCTCTGTTTTGTTCAACTGTAATACCGTAATACAGATT
GTTTCCTGAAGAACGAACA--CTGTTTACTGAAGAGCAAACACGCTGTTTACTGAAGAATAAACACTCTGTTTACCGAAG
AGTGCACTCTGTTTTCTGAAGCACGAACACTCTGTTTACTGAAAAACTCTGTATGGAGGCTTTCCTTTCTTCGCTTTCTC
CAAATCTACTTTCAACCCATCCCTCTAGGCATGGGGAAAAGTTCACTGGAACATAAAATTTTGAGCACCCAACAACGAAC
CTTTAATTCATCAACCTTTTCATCCAAGCTCGTCATCTGCGAATTGGGACAGCACTCCCAGGTTGCAGATTGTAGAAGCC
CGAGTGAC-----------------------------------------------ATTTTACCTCTTTGTTTGCTTGCTG
ATAGACGGATAACACCTCTTCCATGGTCCTCGAGGTCATTGAGATGCTCATCAACAACAGTGACGAGCAGAATAAGTGTT
CCATCTACGTATGTCTGTATGTACACATTCATAGACCGCCTGTCATGGCATTGTAGGTCGAAG-----------------
-------------------TTTGGCACCTGTCGGACTACGTGGTCACG--------------------------------
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>chr6D_293
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----------------------------------------------------CAATTTTTTTGTGCAGACCT--TTTTTT
TTGGCACATT----------------------------GTAGCTCTGATGTTTTATCGACACGAGAAGTTTGACACCCCA
TACGCTGTTTCATTTTTATTTTGCGGGGAATATGCTGTTTCAAGTGG--GAGAAAAAAAGAGAG--AAAAAAAATGCTCG
TGCGCGGATAACGAAGATGCAGATGA-TTCCCTCCTCTA-----CCTGTGTTTCAAAAATTTCCCGTCTCCCTCCAACTC
CCGCGATCCGCGCCAAACCCAAAATCTCCTCCCT-CCCGCACCGCCCGATCCGACGGCATCGCACCGCTCCACGTCACCG
ATCCGCGGCCTCGCCCTCCCCACCAATCACGCGAGGCCCCCCTCCACCATATAACCCACCCCCGCCCCCGCCAATCCACC
ACCAATCTCTCAGCCCCCACAATCTCACCTA-------------------------------------------------
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---------CTCCGGCCATCTCTCCGGCGACCACCGCAGCACCACCCT------TCCTTCCGACTCCAGCGATGGCGACA
GCGGCAGCCGGCGGCGGGAGGGGCAAGCCGAAGGGCAGCAAGTCGGTGTCGCGGTCGGTGAAGGCGGGCCTGCAGTTCCC
CGTCGGCCGCGTCGCCCGGCACCTCAAGGTCGGCCGCTACGCGAAGCGCGTGGGCGCGGGCGCCCCCGTCTACCTCTGCG
CCGTCCTCGAGTACCTCGCCGCCGAGGCCCTGGAGCTGGCCGGCAACGCGGCGCGCGACAACAAGAAGACCCGGATCTCG
CCGCGCCACATCCAGCTCGCCGTCCGCAACGACGAGGAGCTCAGCCGGCTGCTCGGCGGCGTCACCATCGCCGCCGGCGG
CGTCCTGCCCAACATCCACTCCGTGCTCCTCCCCAAGAAGGCCGGCAAGGGCGCCGGCACCGGCGGGTCCGCTTCGCAGT
CCCAGGAGTTCTAGAGTACCAGAGATCTGAGTATGGCGTG----------------GTGATGGTTTTAGGTTGGTAGATT
AGTTCTT---GGCCAATGTTCTTGTTGGTACATGTATCGAGGGTGGATCTGGTTGGAATGGAATGCATCTGGT-------
---TCTGCTGTCTGTGATTTGTCCATGGTA---ATCTGAATGAAACGGATTTTGCTTTGCTCTGACAGTAAT--------
----------CACGAGTCCTCTTCTTGAACTGGTTTGGATGGGGTGAAATCTTGTTCCTTTCGCTACTTGTTGCTGCCTA
TGATGT--GAATGTTAACCTGAATGAAACGGAAATGCTGGTATTGTAT---TAGTCTGACGAATGAATGGTGCAGCACTT
GCTGCTTGCAGGCTGGTATGACTGTTTCCCATGTTAAGCAGCTTGGTTCTTTTGCCCTGACAATGCAAAATCCCTCTTGT
GGATGGATTCAATCCAAGGTCCACCAA-AACCTACGACTGCGCAGATTGTTACAC----AACATTTTTGTTCTTT-----
-----AAGTTGCACCCAGGTACAAACTTCATCT-----------------------------------------------
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-----------------------------------------------------------------------ATACAGATT
GTTTCCTGAAGAACGAACAATATGTTTACTGAAGAACGAACACTCTGTTTCCTGAAGAACGAA-----------------
----CAGTCCGTTCACTGCAGGACGAACACTCTGTTTACTGAAAAACTCTGTATGGAGGCTTTCCTTTCTTCGCTTC---
------------------------CTAGGCATGGGGAAAAGTTTGCTTTCTA----------------------------
---------------------------------------GGAACCGGGACAGCATGCCGAGGTTGCAGATTGTAGAAACC
TGAGTAAGTGAGTCAATAATAGTGATGATGAAAATTCGTTTTCCTCGAGTGACATATTTGACCTCTTTGTTTGCTCGCTG
ATAGACGGATAACACCTCTTCCATGGTCCTTGAGGTCATTGAGATGCTCATCAACAACAGTGACGAGCAGAATAAGTGTT
TCTTCAATGTCTCCTAC---GTACACATTCATAGACCGTATGTCACGGCATTGTAGGTCGAAGTTTGCCTATTAGATGAA
GTGGAGCAACGTTCCTCCATTTGGCGCCTGTCGCACTACGTGATCACGTCAAACTCTTTTTGACGTAGGAACCATATTTT
CATATACAGAAGTAGCATATTTATAAATAAAAGGAAACAAGAAAAGATGCAAGAGTGAATCAGCCATTTCCTTGTCTTGG
TAACATGGTGCAAAAGAAGGGATTCTGATCAGCTTAACTCAGAGTTTGTTCTCGATCCAATTCTGAAGAATATTCAAGTA
GTTATTCTTTATATAGTAAGCTCATTATCTTCAGATCCTGTCTCAGAAGAGTCCTTCTGAAATATTCCAGGGGCAATCTT
CTTGAAGATTTTATTGTTCCTTTGGTACTTGTCGCTGCCTATGATCTGTGAATGTTAATATGAATGAAACGGAAATGCTG
GTATTGTACTAGTCCGACGAACGAATGGTGCATGCTTGCTGGCTAGTATGAATGTTTCACATGTTCAGTAGTTCGATTCT
TTTGCCCCGACAGTGCGAAATCCCCCTTTTGTGGATGGATTCAGTCCAAGGTCCACCAAAGCCAACGAATGCACAGATTG
TTATACAACATGTTTAGTATTGTTGTTTTTAAAGTGGCACCCAGGAACTTCATCTATACAGATTGTTTACTGAAAAATGA
GCGCTCTGTTTATTGAAGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS---------------S--------S--S-----S---------S-S--SS------
----------------S-SS-------------------------------------S----------S-----------
-----------------------------------------------SS----------SS-------------S-----
-----------------------------------SS-SSSSSS------------------------------------
----------------------------------S-----------------------------S---------------
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-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----SS---------------------S-----------SS-SSS--------------------------
-----------------------------------S--------------------------------------------
S--S-----------------------------S-----------------------------S----------------
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------------------------------------------------------------------------S-------
----------------SS---------S--SS-SS-SSSSSSSSSSSSSSSSSSSS------------------------
---------------SS-----------S-----------------------------------------------S---
-------S-SSSSSS--S-SSS----------------------------------------------------------
-----------------------------------------------------S---S----------------------
----S-SS---------------------S---------S--S---SSS-S--S-----S-----------S-----S--
------SSS---SS-S-S-----------------------S-S------------------SS-SS-------------
---------------------------S-S-----S----S------------S--------------SS-S--SSSSSS
SSSSS--------S-----S----SSS-----------------------------------------------------
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----S---------SS--------S------------SS-----------------------------------------
---------------------S----S----S-S-S------S------------------S------------------
----------------S-----------------------------SS--------SS------------------S---
-----------------------S----S-S-------------------------------------------------
--------S-------S----------------------------S------------------------S---------
S------------------------------------S----S----------------S-------S------------
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-------------------S------------------------------------------------------------
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>forward_1012
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--------------------------------ACCGTAGTACCACCCTACCC----------------------------
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>reverse_3140
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-------------------ATTGGCACCTGTCGGACTAC-----------------------------------------
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