>input_sequence_80752
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----------------------------------------------------------ATGCATGCAACCAATTGTCACC
GTACGTCGACCGCAAAGCTCTCATGGCCGCCCACCGTCTCCGGCCGCCACCCCCTACAAAAACCCGGCGACTCCGTTCCC
GTCCAAGCATCGCACGCCATCTATCAACCCTTCCGCCACCTTGTCTCTCA--CTCGCGAAAGCCCCGTCCACAGGTTACG
TACGTGCGCAGAAACGAGAACATGGCCCAGAGCAGGACCACCGCCGTCGCGCTGCTCCTGATCGCCGTCCTGGTGGCGGC
CGCGTCGGTGCCGGCGGCGACCGCCTTCGGCTGCTACGACGACTGCTACGAGCGCTGCGCCAACGGCGCCAAGGAGGACC
CAGCCTGCACCAAGATGTGCGGAGAGGCATGCGGCGTCGGCGGCAAAGGCGCCGGCGCCGC---------------CGGC
GGCGCGCCCGCCGCTTGA--------------------------------------------------------------
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>chr5D_1_TraesCS5D01G342900
GGACCGGGATTAATTAGTTTAGGGTGCGAGTGACAGGCATTTTGACTTCGGAGTTTGATTCGCCGAGTGCAGGTGGCGAT
GCGACGTCGCGAGACGACAACGAGCGCGGTGTACCGGTGGGGTGCTGGGGCGACGGGGTTGGGAGGCGGAAAGCGCGGCG
CTGCGACGTCGCG-------------------------------------------------------------------
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--------------------GCCAGGCCAAGGCCGCGCGACCCGTCGGCACC-----CGGCAGGCAAGCACGACGATTCT
GTCTCGATCGGAGAGGGTGAGGCGATTTCGGGAACGTACACGCACAAAGTGGACGCACGCGATCAATTCCAACTGCCTAT
CTCTCC------CCGCGATTTGGTCAAAAAAGGGGATAGATTCTACTCCTCTC---CTACCTTTGTCTCTCGATCACTCT
TCACAGGTCCTGCCGGTGCTTACCGACACGGCACGGCACGGCACATTGTCGTCGCCCAACAGAATAACGAGATTGGCACG
ACGCG---------------------GAACAAAGACTGACATAATTCGGGAGCTCACCGACGGATACAGCATCACGACGT
CATCATCCGACAACAGAGGATGTTGCTTCGTCGTATCATGCCGACAACAGTCCAATGCACGGTATGCACCTGCATATCAA
CTCTTGAATCGGTTACTCTTTACAGCATGCTTTACTTTGT-TTATATGTTCATGCACATATGTA----------------
--------------------------------GATATGTACATTTGTCCTTCCTCCTTTTTGAATTACTTATCATAGAAA
ATAATAAAAATGAATGTATGTAGAATTAAAATACATCTAAATGCATTCATTCATGCAATAAGTAATTTCGGAC---GGAG
GGGTAGTAGATGACTGTTGTTTCAGATCTTCATGTCATGACAGCCATGCTATACTATGGAAATGTACATGCG--TGTTCT
GTTGACGCCATGAAT-AACTATTTTTCTCGCTTTTTCTGACATTTTATCATGCTCCAGAGAACCAAAACAGTCCCACGCC
GGTCATTCGGTCAACACGACC-GAGGAACAGTGGTAACGCGAACGCGGCGGCACCGGCATGCATGCAACCAATTGTCACC
GTACGTCGACCGCAAAGCTCTCATGGCCGCCCACCGTCTCCGGCCGCCACCCCCTACAAAAACCCGGCGACTCCGTTCCC
GTCCAAGCATCGCACGCCATCTATCAACCCTTCCGCCACCTTGTCTCTCA--CTCGCGAAAGCCCCGTCCACAGGTTACG
TACGTGCGCAGAAACGAGAACATGGCCCAGAGCAGGACCACCGCCGTCGCGCTGCTCCTGATCGCCGTCCTGGTGGCGGC
CGCGTCGGTGCCGGCGGCGACCGCCTTCGGCTGCTACGACGACTGCTACGAGCGCTGCGCCAACGGCGCCAAGGAGGACC
CAGCCTGCACCAAGATGTGCGGAGAGGCATGCGGCGTCGGCGGCAAAGGCGCCGGCGCCGC---------------CGGC
GGCGCGCCCGCCGCTTGAGCCGATCA-------TGCATGCATGCATGCATGGCATCGCACACAACTCAAGATACGCACGT
ACGACCGATCAT-CGGAGGAAACATGCGCGCCTGCATGCTCT------GTTCGTTCATTCGTTCGTGACTAGCTAGTTCT
TCTTGAATTCATTTGCTATTGTCTTTGATTTTCAACCTGGTGCGTGCTTGCATGCATGATAGGTGGAATCAAGTTCCGGC
CGGCGTCGAGTTTATTGTTTTTTTTCGAGTTCTTGATTGTTTTTCGAGATAGCTACCCGCTTATTTCACGCGGTAAGTTT
ATAATTATTAATTGATTTAATTTAAATATCTATCTCTGGTTCCATGTAGATGTGTGGGTGCCGATCGTCATCATCTCTTG
TTAATTATTTTCGCTGTATCTCCTATATATGGACAAGATGAGTCTATAGCCTAATAAATGAAGTGTTACATGTTACCACA
CATATGTTACTCCCCACTATAGAGGTAGTAACATAGAGTAGTAACATGTCTAGTAACATGAGACATGTTACTACTCTATA
TTACTACCCATTATGGCTAGT-----------------------------------------------------------
-----------------------------------------------------------------------CTTACTCTC
ACACAATGTCTACTTTAGTGTGGATCTAGGCATGGGTGGCCTGACCAGATGGAGGCTTGGAGCGGGCTTTGGCTCCAGTT
TTTCACCCGTGAGCCTGGGCCGAAAACCCGAATACTTAAAACCTATGACTTGGTGAAAATATGTGCATTGCTCCCTCCGT
CTCAAAATAAGTGTCACTAAAAATAAATAAATAAATAAATAAATGATAATAAATCCTTTATGAGAAACACCTATAACTTC
ATTCATACT-----------------------------------------------------------------------
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----------------------------------------------------CACAACTATTAAAGATGCATTCCTTTTG
AACCATGCTTCAAGAAATTACAAACAACTCCTACAGCTAAGAATTACAAT-AAATCTCTTGGAGGCATCTTTTCCGTAGT
ATCAACCTTTGCAAGATGAAATATTGCCAAGACTTCAACAAATAGACCGCAATTCGACTGGAGTAGCGATACTGCGACTC
GTTCAG
>chr5B_1
GGACGGGGATTCATTAGTTTAGGGTGCGAATGACAGGCATTTTGACTTTAGGGTTTGATTCGCCAAGTGCAGGTGGCGAT
GCGACATCGCGAGACGACAACGAGCGCGGTGTACCGGTGGGGTGCGGGCGCGACGGGGTTGGGAGGCGGAAAGCGAGGCG
CTGCGACGTCGCGGCCAGGCCAGGCAAATTTGACAAATTTAACCTATAGACGAAATTAAATCACAGAATGAACTGTCCGT
AAAATTATTTCACGCGGTTGACCCGTGGCGCCTAGCTCTCAGGCGCTGCACTAGTGCAACGCCCGGGAGCTAGGCGCTGC
ACTAGTGCAACGTCTAGGAGCTAGGCGCTACACTGTATAGTGTGGCGCCTAGCTCTCAGGCGCTGCACACCACTTAGTAA
TTTTCTGATCACACGTGTGCGACGCTGGCCGTGTAGCGCCTATCTCTGAGGCGTTGCACAGTGTAGTGTGGCGCCTTCAT
GGCGGGCGTCACACAAAAAGATCAGCCGCGTGAAATAGTTTGACGAATAATTCATTCTATGATTTGATTTTGTCTATAGG
TCAAATTTGTCAAATTTGCCGCCAGGCCAAGGCCGCGCGACCCGTCGGCACC-----CAGCACGCAAGCACGACGATTCT
GTCCCGATCGGGGAGGGTGGGGCGATTTCGGGAACGTACACGCACAAAGTGGACGCACGCAATGAATTCCAACTGCCTAT
CTCTCTCTCTCTCCGCGATTTGGTCAAAAAAGGGGATAGATTCTACTCCTCTC---CTACCTTTGTCTCTCGATCACTCT
TCACAGGTCCTGCCGGTGCTTACCGACACGGCACGGCACGCACC-TTGTCGTCGCCCAACAGAATAACGAGATTGGCACG
ACGTGGAACAAAGACTAACATAATTAGAACAAAGACTAATATAATTAGGGAGCTCACCGACAAATACAGCATCACGACGT
CATCATCCGACAACAGAGGATGTTGCTTCGTCGTATCATGCCGACAACAGTCCAATGCACGGTATGCACCTGCATGTCAA
CTCTTGAATCGGTTACTCCTTACAGCATGCTTTACTTTGT-TTATTTGTTCATGCACATATGTAGC--------------
-------------------------------AGATATGTAGATTTGTACTTTCTCCGTTCTGAATTACTTACCACAGAAA
TCAATAAAAACGAATGTATGTAGAATTAAAATACATCTAGAAATGTTTACTTACGCAATAAGTAATTTCAAACGTAGGGA
--GTAGCAGATGAGTGTTGTTTCAAATCTTAATGTCATGACAGCCATGCTATACTATGGAAATGTGCATGTGCTTGTTAT
GTTGACGCCATGAAAAAACTTATTTTCTCGCCTTTTCTGACAATTTATCATGCTCTAGAGAACCAAAACAGTCCCTCGCC
GGTCATT-GGTCAACACGATTGGAGGAACAGTGGTAATGCGAACGCTGCGGCAGCGGAATGCATGCAACTGGTTGTCACC
GTACGTCGCCCGCGAAGCTCTCATAGCCGCCCACCGTCTCCGGCCGCCACCCCCTACAAAAACCCGGCGACGCCATTCCC
GTCCAAGCATCGCACGCCATCTATCAACCCTTCCGCCACCTTGTCTCTCA--CTCGCGAAAGCTCCGTCGACAGGTTACG
TACGTGCGCAGAAACGAGAACATGGCCCAGAGCAGGACCACCGCCGTCGCGCTGCTCCTGATCGCCGTCCTGGTGGCGGC
CGCGTCGGTGCCGGCGGCGACCGCCTTCGGCTGCTACGACGACTGCTACGAGCGCTGCGCCAACGGCGCCAAGGAGGACC
CAGCCTGCACCAAAATGTGCGGCGAGGCATGCGGCGTCGCCGGCAAAGCCGCGGGCGCCGC---------------AGGC
GGCGCGCCCACCTCTTAAGCCGATCCCTACGTGTGCATGCATGCATGCATGGCATTGCACACGACTCAAGATACGCGCGT
ACGGCCGATCAT-CGGAGGAAAGATGCGTGCCCGCATG--CT------GTTCGTTCATTCGATCGTGACTAGCTAGTTCT
TGTTGAATTCATTTGTTCTTGTCTTTGATTTGCAACCTGGTGCGTGCTTGCATGCATGATAGGTGGAATCAAGTTCCGGC
CGGCGTGGAGTTTATTGTTTTTTT-CGAGTTCTTAGTTGTTTTTTGAGATAGCCACCCGCTTATTTCAAGCGGTAAGTTT
ATTATTGTTAATTGATTTAATTTAAATATCTATCTCTGGTTCCATGTAGATGTGTGGGTGCCGATCGTCCTCATTTCTTG
TTAATTATTTACGCTGTATCTCCTGTATGTTGGTCAAGCAGACACATAGTAAGTATATATGTTGCCGAGTTCAAAAAAAA
AGTATATACGTTGCGCACTCCATGTGGTTGGAAACCTTTTCTCTTCCCGTTACGAACTCCTTTTAAGAAATATCGCCCTC
CGTCCGAAAAATTTGTTTCTCAAATGAATGTATCTAGCATCAAGTTAGTGTTAGATACATCAATTTAAGGGACATACTTG
GAACAAGTTTTTTCGGACGGTAAGAGTACAATGCAGATACTCACACGTAGGATAGGAACACCACCGCCACACTTACTGTC
ACACAATGTCTACTTTAGTGTGGACGTAGGCATGGGTGGCCTGACCAG--------TTCGAGCGGGCTTTGGCTCCGGTT
TTTCGGCCGTGAGTCTGGGCCGAAAACCTAAATACTTAAAACATATGACTTGGTGAAAATATATGCGTTGCTCCCTCCAT
CTCAAAATAAGTGCCACTAAAAATAAATAAATAAATAAATAAATGATATTAATTCCTTTTTGAGAAACACCTATAACGTC
ATTCATACTCATAGTGGCGGAGACAGGGGGACCAGCAGGGGCCCTAGCCCCCCCTAACATCAAGGATTTACTACTAATTT
ACTTATAAACAATGTAGAATTAGTGTGCATTTGCAGGTAAGACCCTATTTTTTCAATGGTTTGGCCCTCCCAACCAATTT
TAACATCCCTGGCCCCCCTAATCCAATTTTCCTGGCTCCGCCGCTGCATACTCACAACAATTACGGATACATTCCTTTTG
AACCATGCTTCAAGAAATTAAAAACAACTCCTACAGCTAATAATTACAATAAAATCTTTTGGAGGCATCTTCTCCGTGGT
ATCAACATTTGCAAGATCAAATGTTGCCAAGACTTTAACAAATAGACCACAGTTGGACTGAAGTAGCGATACTGCAACTC
GTTCA-
>chr5A_157
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----------------------------------------------------------------------------GGCG
CTGCGACGTCGCG-------------------------------------------------------------------
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--------------------GCCAGGCCAAGGCCGCGCGTCCCGTCGGCACTCGGCACGGCAGGCAAGCACGACGACTCT
GTCTCAATCGGGGAGGTTGAGGCGATTTCGGGAACGTACACGAACAAAGTGGACGCAATTCACACTCCTTTG--------
-------TCTCTCCGCGATTTGGTCAAAAAAGGGGATAGATTCTACTCCTCGCCTACTACTTTTGCCTCCCGATCACTCT
TCGCAAGTCGTGCCGGTGCTTACCGACACGGCACGGCAC-----ATTGTCGTCGCCCAACAGAGTAACGAGATTGGCGCG
ACGCGGAACAAAGACTAG------------------TAACATAACTCGGGTGCTCACCGACGGATACAGCATCACGACGT
CATCATCCGACAACAGACGATGTCGCTTCGT-GTATCATGCCGACAGCAGTCCAATGCACGGTATGCACCTGCATGTCAA
CTCTTGAATCGATGACTCTTTCCAGCATGCTTTACTTTGTGTTATTTGTTCATGCACATATGTACTACAGTGGATATGTA
GATTTGTACTCGTGAATGCAGGGTATGTAGTAGATATGTAGATTTTTACTTCATCCGTTCTGAATTACTTATCACAGATA
TCGATAAAAATAAACGTATGTAGAATTAAAATACATCTAGATACATTCATTTATGAGATAAGTAATTTTGTAC---GGAA
--GTAGTAGATGAGTGTTGTTTCAGACCTTCATGTCATGACAGCCATGCTATACCATGCAAATGTACATGCG--TGTTCT
GTTGATGCCATGAAT-AATCTATATTCTCGCTTTTTCTGACATTTTATCATGCTCTAAATAATCAAAACAGTCCCTCGCC
GGTCGTTCGGT----ACGATC-GAGGAACAGTGGTAACCCGAACGCGGCGGCACCGGCATGCATGCAACCAATTGTCACC
GTGCGTCGCCCGCGAAGCTCTCATGGCCGCCCACCGTCTCCGGCCGCCACCACCTACAAAAACCCGGCGGCGCCATTCCC
GTCCAAGCATCGCACGCC----ATCAACCCTTCCGCCACCTTGTCTCTCTATCTCGCGAAAGCCCCGTCCACAGGTTACG
TACGTACCCAGAAACGAGAACATGGCCCAGAGCAGGACCGCTGCCGTCTCGCTGCTCCTGATCGCCGTCGTGGTGGCGGC
CGCGTCGGTGCCGGCGGCGACCGCCTTCGGCTGCTACGACGACTGCTACGAGCGCTGCGCCAACGGCGCCAAGGAGGACC
CAGCCTGCACCAAGATGTGCGGCGAGGCATGCGGCATCGGCGGCAAGGCCGCCGGGGCCGCGGGTGCCAAAGCTGGAGGC
AGCGCGCCCTCCGCTTGAGCCGATCCCTACGTGTGCG----TGCATGCATGGCGTCGCACGACTCAAAGA-----CGCGT
ACGGTCGATCATTCGGAGGGAAGATGCGTGCATGCATG--CTCCGTTCGTTCATTCATTCGTTGGTGACTAGCTAGTTAC
TGTTGAACTCATTTGCTCTTGTCCTTGATTTGCAACCCAGTGCGTGGATGCATCATAGGTAC--GGAATCACGTTCCCGC
CAGTGTTGAGAGTTTATATTTTT---------------------------------------------------------
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>SNPs
----S------S-----------------S------------------SS-S------------S---------------
-----S---------------------------------------S--S--------------------------S----
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-----------S------------------------------------------------S--S----------------
-----S--------------------------------------------------------------------------
----------------------------------------SSS-------------------------------------
-------------------------------------S------------------------------------------
---------------------------------------------------------------------------S----
---------------------------------------------S----------------------------------
----------------------------------------S------S--------S--S--------------S-----
SS-------------------------------------S--S--------S------------------S--------S
SS-----------S------------------------------------------------------------------
--------------------SS---------------------------------S-------------------S----
-------------------S------------------------------------------------------------
--------S----S---------------------------------------------------------S--S-----
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----------------------S-------------------------S---------------------------S---
---------S---------------S------------------------------------S-------------S---
---S------------------S-----S---------SS----------------------------------------
-S---------------S-------------S------------------------------------------------
------S-----------------S---------SS--------S--------S--------------S-----------
--S---S--------------------------------------------------------------S----S-----
----------S-------------S---S-S-SSS-SSSSSSSSS----SSSSSSS-SSSSSSSSSS-SS-SSS-SS-S-
SS---S-SSS-SS-SSSSSSSSS-SSSS-SSS-SSSSS-SS-SSSSSSSS--SS---SSSSSSS-S-SS-SSS-S-SS-S
SSS-SSSSS-S-S--SS-SSS-----------------------------------------------------------
-----------------------------------------------------------------------------S--
------------------------SS----------------------SSSSSSSS--S-----------------S---
----SS-------S--------------SS------------S-------------------S---S-----------S-
-------------S----------------------------------S---S------S-----------------S--
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----------------------------------------------------------S----SS---S-----------
--------------------S-------------------S----------------S-------------S-----S--
------S----------S----S------------S------------S--S--S-----S--------------S----
-----S
>forward_65
---------------------------------------------CTTCGGAGTTTGATTCGCCG---------------
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>reverse_2717
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----------------------------------------------------------------------------AGTT
TTTCACCCGTGAGCCT----------------------------------------------------------------
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