>input_sequence_80751
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--------------------------------------------------------------------ATGGCCACCTCG
ACCGCCGCCGTGCTGTCCCCGCCCACCGTGGCCGGGCTCCGCCTGGCGCCGTCCCCGCGGGCGGCCGTCTCGTTCCGGG-
--------CGC---CGGCGAGGCGGTCCGTGGCGGCGCGGGCGGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCACGG
GGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTCCCCGAGCAGAAC
GGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCGGGCATCCTCAAGTCCAACGACCCCGTCGGCTT
CAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGGAT
ACGACCCACCCTTCTTCGGCTGA---------------------------------------------------------
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>chr5D_1_TraesCS5D01G265500
AAAATCCCCCAAGGGGATTAGATGCACTTTCAGCCGCCCCATCCACTAGCTCAGTCGAGTTGTCCTTCTCAGAAGATGGG
TCCTCCTACGCCGCGCAGGAGATGAATAGATGACTAACTCCACCCCAACAGCCAACCTAGCTTGGAACTCACTCCC---A
ATGAAACTGGAGTCGTG-TCATTAACAGGAAGCGAGACGCGGCACACTTCCCGAGCATCCTCTCTAGGAAGGCAGTGCAG
ATGCAAGTAGAGTCAAAAGCAACACGAACCACGAGTGACTCAGGTGAACAAGCCCGTATGAAATAGTAAATACCAATAAA
CACATTAGAACCATTAATCTTCGCATGGCCACAACTTCCTAAATTTAAAGAGTACACATATGCGACAGTTGCCTAAAATT
TCCCTAACTACTCAGATGACTAAGCCGGGAACGAGTCGACGACATCTCCACCAAAGTTGTCGTCTCTGGCTCGTTCCCAG
CTTGCCCTCGTGGAGGACGCCACGACTGGCCGTCGTCCCCGTCTCCAACTCAGACGATGCTACTCTCTCTCTCACACACA
CACACCG-------------------------------------------------------------------------
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---------------------------------------------------------------GCTGAACTGT---TTTT
TTAGTTGCCTCGGGATTAGGAAACGCGAAAATTTAAAA----TCTGAACTGCGAGGTTCATATGCTGCGCCCTGCACAGC
CACCTTCTTCACGTGCCCTTGGTC-------TGCTGGCCAGTTGGC----CATCCATGTAACTCTCGAGGGGCACACAAG
CGACACGTCACAGTGGCAGTGCTGACTTGCCGTGAGAAGAGAAGAAG----AAAAAAAGGTATGGCTCAGATACCTTATC
CAGCACCCTCCAATGGCCACACGCCATGAGCATACCGCGAAATCCCGCTCGCCTCCACCACTAACCTCGCATTCCCGCGC
CCCCACCATAT---------------CCCCCTATATACCCACACCACCAAACACCACGTA---CGTAGCGCCTACCGAGA
TCAAGAACTCGCCGCACGTTGGTT------CTTGACCACCCACACAGATCCGAGGGAGA--GAGGACCATGGCCACCTCG
ACCGCCGCCGTGCTGTCCCCGCCCACCGTGGCCGGGCTCCGCCTGGCGCCGTCCCCGCGGGCGGCCGTCTCGTTCCGGG-
--------CGC---CGGCGAGGCGGTCCGTGGCGGCGCGGGCGGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCACGG
GGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTCCCCGAGCAGAAC
GGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCGGGCATCCTCAAGTCCAACGACCCCGTCGGCTT
CAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGGAT
ACGACCCACCCTTCTTCGGCTGATCCCTCCCATGTCTG-CCTGCCTG--------CGTGCCGACCGGACCGGCTTGCTGT
TGTAATCCGCCGTGTTTTCATTAGTTCTC---TATACGCTGATGATGTACTATCATGTTTGTAT---------GTATGTG
AGATGGTGAAA----GAT----TAATCTGGACAAGTAGTGCAACCGCGTGTGTGTATTC---AGTGCCACATGAATGATT
CGTGTT--------------------------------------------------------------------------
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----------------------------------------------------------------------------TTCA
TCTTCAATCATGGCAATACAACGGATATCAGAAATAATAAAAATTACATCCAGATCCGCAGACCACCTAACGACAACTAC
AAACACTGAAGCGAGCCGAAAG--CGCCATCGTCGTTGCCCCTCCCTCGCCGGAGCTAGACAAAACTTATTATAGTAGAC
AGTTGGGAAGTCATTCTGCTAAGGCTCCATAGAACAAGCGCAGTAAAACAGCAACCGCTGCCGATGAAGAGTAGCGTGGA
TCGAAAGGATCCAACCTAAAAACACATGAATGTAGACGAAG---GACCAGATCCGAACAAATTCATCAAGAACGGATCCG
CTGGAGACACACCTCCACACGCTGG-----------AGACACACCATCCGGACAATGAATCCATGCACAGTAGAGAAGCC
AATCTCAACATCTGTAGTTATACTCATACTTTTTACAGG------------GTCGCAATGGGGAC--ACACATTTTTTGT
TCGCAAGCACCCTGATTTACCATCCATCTTAT--CATCAATATGATTACTTACCAGACGTAGACTTTAGCTGCCAACTGA
CTCAGTACTATCATCAATATGATTACTTACCAGACGTAGACTTTAGCTGCCAACTGACTCAGTACTATCATCAATATGAT
TACTTACCAGTTACCAAACGTAGACTTTAGCTGCCAACTGAATCATGAGACAGTTACGTTCTCCACGTGACAGTTATGTT
CAGTATGTATGCACCAGAAAAATTGCATAACTGCTTC-------------------------------------------
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--------------------------ATGACTTGCACAGGCACAGCACATCCAAACAGCAACAGGGAAGAAGATGACAGC
ACGAGCACTGGTACACTTGGATGTTG
>chr5B_1
AAAATCTACCAAGGGGGTTAGATGCACTTTCAGCCGCCCCATCCACTAGCTCAGTGGAGTTATCCTTCTCAGAAGTCGAG
TCCTCCTATGCCGCGCAGGAGATGGATAGACGACTAACTCCACCCTAACAACCAACCAAGCTTGGTAGTCACTCCCCTGA
ATGAAACTGGAGTCCTACTCATTAACAAGAAGCGAGATGCAACACACTTCCCTAGCATCGTCTCTAGGAAGGCAGTGCAG
ATGCGGGTAGAGTCAAAAGCAACACGAACCACAAGTGACTCAGATGACCAAAACCGCATCAAATAGTAAATACCAATAAA
CACATTAGAACCATTAATCTTCGCATGGCCACAAATTCCTAAATTTAAAGGGTACACATATGCGACAATTGCCTAAATTT
CCCCTAACTACTCTCTTTTCCTTTCCTCGTCCTCCTTTTTTGTGTCATGCTTCCCCCCCTCTCCAGGACATCACTGATGC
GCCTCCATCTGCCGCATGCTGATGTCGGCCTAATCATCGTCCCCCACCACCCGCGGTTGGTGTCGGGCACCCCTCCCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAGCTGAACTGTTTTTTTT
TCAGTTGCCTTGAGATTAGGAAACGCGAAATTAAAAAAAAAATCTGAACTGCGAGGTTCATATACTGCACCCTGCACAGC
CACC-TCCTT-CGTGCCCTTGGCCTGCTGGGTGCTGGCCAGTTGGC----CATCCACGTAACTCTCGTGGGGCCCACAAG
CGACACGTCA------CAGTGCTGACTTGCGGTGGGAAGAGAAGAGAAGA-AAGAAAAGGTATGGCTTAGATACTTTATC
CAGCACCCTCCAATGGCCACACGCCATGAGCACACCACGAAATCCCGCTCCCCTCCACCACTAACCTCGCATTCCCGCGC
CCCCACCATATCCCCCACGTCACCACCCCCCTATATACCCACACCGCCAAACACCACGTAGTACGTAGCGCCTGCCGAGA
TCAAGAACTCGCCGCACGTTGGTCCTTGAA------CACCCACACAGCTCT-------A--GAGGGCCATGGCCACCTCG
ACCGCCGCCGTGCTGTCCCCGCCCACCGTTGCCGGGCTCCGCCTGGCGCCGTCCCATCGCGCGGCGGTCTCTTTCCGGGG
GGCCTCGTCGC---CGGCGAGGCGGTCCGTGGCGGCGCGGGCCGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCACGG
GGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTGCCCGAGCAGAAC
GGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCATCCTCAAGTCCAACGACCCCGTCGGCTT
CAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGGAT
ATGACCCACCCTTCTTTGGCTGATCCGTCCCATGTCTCCCCTGCCTG--------GGTGCCGGCCGGAGCGGCTTGCTGT
TGTAATCTGCCGTGTTTTCATTAGTTCTATGTTATACGCTGATGGTGTGCTATCATGTTAGTACACTGATGGAGTATGTG
AGATGGTGTACTATCATGTTAGTAATCTGGACAAGTAGTGCAACCGCGTGTGTGTATTGATGATTGCCACATGAGTGATT
TTATCTCTCTCTTTCCCCATAGGGCCATAGTAGAAAGGCAATTTTACTATGCACGGGATATCCTGTGCATAAATCCATCG
TCCGAGGTTGCTTTGCGATCCGTGCTACCTTTTCTTTTTACTGTTTCCGGAATTTGTCTTGCTTCAAAGCGCACGGACAG
TGAAACAAGAAAAAATAAATCGAACACAACATTTGAAACGAGATAACTTCTTTTTTGCGAGAAAACTTTCAATTTATTCA
TCTTCTATCATGGCAATACAACGAACACCAGAAATAATAAAAACTACATCCAGATCCGCAAGCCACCTAGCGATGACTAC
AAGCACTAAAGCAAGCCGAAGGCACGCCGTCGTCATTGGTCCTCCTTCGTCGAAGCCAGACAAAGCTTACTGTAGTAAAC
AGTCAGAAAGTCGTTGTGCTAAGGCCCGATAGGACCAGCACAACAGAACAACAACCGTCACCGATGAACAGTAGCGTAGA
TCGAAAGGATCCAACCTGAAAACACATGAACGTAGACGAACTATGACTAGATCCGAGCAAATCCACCAAGAACAGATCCA
CCAGAGACACACCTCCAGACGCTCACCAATGATA-------------------------------CACGGTAGAGAAGCC
AATCTCAACATCTATAGTTATACTCCTATTTTTTACAGGCAACTGACATGCGTCGCAATGGGGAC--ACA--TCTTTTGT
TCGCAAGCACCCTGATTTACCATCCATCTTAT--CATCAATACGATTACTAACCAGACGTAGACTCT-GCTGCCAACTGA
ATCAGTACTATCGTCAATATGATTACTTACC-------------------------------------------------
---------GTTACCAAACGTAGACTTTAGCTGCCAACTGAATCATGAGACAGTTATGTTCTCCACGAGACAGTTATGTT
CAGTATGTATGCCCCAGAAAAATTGCATAACTGCTTCGACAAGCATGTCAGGATGGCCTTTGACAGCTTGGTCAAGTGGG
AAGTTAGGGATGGATCGAAGGCTTTGTTCTGGAGCGATCGCTGGATCAGTGGCTCCTGTGTGAAGGAGATTGCTCCGCTA
CTTGTGGACAAAGTGCGGCAGCAGGTAGTTAATAGGAGGAGAGTGAAAGACGCTTTGTACCTCCATGGGTGGACGCATGA
TATCGTGGGAGATATTAATACCGACGAGCTCTCGCAGTTCATTAGGCTATGGGAGGTGCTGGTTGACATCGAGCTCACTC
CTGGCTCGGAGGACACTCCGATCTGGCAATGGGATGCCACGGGCAAGTACTCGACAAAATCGGCGTACAAAATGATGTGT
GAGGGAGGAGTACGATTTCAGTGTGCATCGGCTGTCTGGCGTAGTTGGGCCACGATGACCTGCAAGCTCTTCATTTGGCT
TGCACTTCAGCATAGAGTGTGGACTTTGGACCGCAGACAGAGGCATGGGCTACAAGATCATAGCTCGGCATGTTACCTTT
GTGACCAAGAGGAGGACAATGTGGATCACATACTCATGCATTGTGTATATGCGAGACAAGTATGGTTCTTGTGTTTCAGA
AGGCTGGGCGTTGACGAAGCTTTGATCCCAACCACGGAAGACACACTAGGTGATTGGTGGGTGTCGGCCAGGAAGCAAAT
TGACAAGAGACACCGAAGAGAATTCGACACACTCTGCATTTCGGTATACTGGAATCTGTGGAAGCAGAGAAATGATGTAG
TCTTTCGCAACAGTAACATCACCAATGAATGAGGAGCAGCCGACCTTGTCCACCAGGAACTTGGGTTATGGGCCTCGGCG
AGAGGGAGAGGAGTACTACATGATATAGAGTAGTAGCCTAGCGTGTGGAGTGGAGGGGTGGACGTGCATGCCGTTTGTGG
TAGTGCACTCCGTCGTGTCTAATTCTTGTACATAACCCTCTTTTGTCTATAAAGCTAAGGTACGCAATTTGCGTACTCTC
AAAAAAATATTTTGCATAACTGCTTCATGACTTGCACATGCACAGCACATCCAAACAGCAACAGGGAAGAAGATGACAGC
ACGAGCACTGGTACACTTGGATGTTG
>chr5A_574
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----------------------------------------------------------------------------TTTT
TCAGTTGTCCTAGGATTAGCAAACGCGAAATTT---AAAAAATCTGAACTGCGATGTTCATACGAGGCACCCGGCACAGC
CACC-TCTTCACCTACTCTTGGCC-------TGCTGGCCAGTTGGCCATCCATCCATGTAACTCTCGAGGGGCACACAAG
CGACGCGTCA------CAGTGCTGACTTGCCGTGAGAAGAGAAGTGCAGAAAAAAAAGGGTATGGCTCAGATACCTTATC
CAGCACCCTCCAATGGCCACACGCCATGAGCACACCGCGAAATCCCGCTCCCCTCCTCCACTAACCTCGCATTCCCGCGC
CCCCACCATATCCCCCACGTCACCACCCCCCTATATACCCACAACACCAAACACCACGTAGTACGTAGCGCCTACCGAGA
TCAAGAACTCGCCGCGCGTTGGTCCTTGAGCTTGAGCACCCACACAGCTCCAGCGAAGGAGGAGGACCATGGCCGCCTCG
ACCGCCGCCGTGCTGTCCCCGCCCACCGTGGCCGGGCTCCGCCTGGCGCCGTCCCCGCGCGCGGCCGTCTCGTTCCGGGG
GGCCTCGTCGTCGGCGGCGAGGCGGTCCGTGGCGGCGCGGGCGGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCACGG
GGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTCCCCGAGCAGAAC
GGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCATCCTCAAGTCCAACGACCCCGTCGGCTT
CAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGGAT
ACGACCCACCCTTCTTCGGCTGATCCGTCCCACGTCTCCCCTGCCTGCCCGCCTGCGTGCCGGCCGGAGCGGCTTGCTGT
TGTAATCTGCCGTGTTTTCACTAGTTCTATATTATACGCTGATGGTGTACTATCATGTTTGTAT---------GTGTGTG
AGGTGGTGAAAGATTGAT----TAATCTGGACAGGTAGTGCAACCGCGTGTGTGTACTC---AGTGCCACATGAATGATT
TTATCTCTCTTTTCCCC---------ATAGTAGAAAAGCAATTTTAGTGTGCACGGGATATCATGTGCGTAGATCCACCG
TCTGTGGTTGCTTTGAGATCAGTGCTACTTTTATCTTTTGACCTTTTAGAATC-TGTCTTGCTTCAAAGCGCACGGACAG
TGAAACAAGAAAAA--AAATAGAAGAAAACATTTGAAACGAGAT------TTTTTTTTGAAAAAACTTTCGGTTAACTCA
TCTTCAATCATGGCAGTACAACGAATATCAGAAATAACAAAAATTACATCTAATTCCGCAGACCACCTAGCAACGACTAC
AAGCAAAGAAGCAAGTTGAAGGCGCGCCGCCATCAATGCACCTCCCTCGCCGGAGCCTGACAAAATTTATTGTAGTAGAC
GGTTGAAAAATCGTTTTGCTAAGTCCCTATAGAACCAGCGCATCAGACCAGCAACCGCCGCCAATGAAAAATAGTATAGA
TCAGAAGAATTCAACCTAAAAACACATGAATGTAGACGAAC---GACCAGATCCGAGCAAATTCATTAAGAACAGATCCG
CCGAAGACACAACCCCACACGTCCACCAATGATGCTAGACACATCATCGAGACAATGAATTCATGCACGGTAGAGAAGCC
AATCTCAACATCTGTAGTTATACTCCTATTTCTTACATGCAATTGACATGCGTCGCAACGGGGACACACA--TTTTTTGT
TCGCAAGCACCCTGATTTACCATCCATCTTATATCATCAATATGATTACTTACAGGACGTGGACTTTAGCTGCCAACTGA
ATCAGTACTATCATCAATACGATTACTTACCG------------------------------------------------
---------GTTACCAAACGTAGACTTTAGCTGTCAACTGAATCATGAGACAGTTATATTCTCCACGAGACAGTAATGTT
CAGTACGTATGCCCCAGAAAAATTGCATAACTGCTTC-------------------------------------------
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--------------------------ATGACTTGCACAGGCACAGCATATTCAAACAGCAACAGGGAAGAAGATGACAGC
ACGAGCACTGGTACACTTGGATGTTG
>SNPs
------SS--------S--------------------------------------S-----S-------------SS-S-
--------S---------------S-----S--------------S----S------S-------S-S------------
--------------S-S----------S---------S--SS----------S------S--------------------
----SS--------------------------S----------S---S---SS---S--S--------------------
----------------------------------S---------------S----------------S---------S--
S------------SSS-SS-SSSS--SS-SS-SSS-SSSSSSSS--SSSSSSSSSSSSS--SS-SSSSSS--SS-SSSSS
SSSS--S--SSSSSSSSSSSS-S-S-S-S-SSSSSSS-SSSS-S-SSSSS-S-SS-S--S-SSSSSSSSS-S-S-S-SSS
SSSSSSS-------------------------------------------------------------------------
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-S--------S-------------------S--S----------------------------------S-----------
----S-----------------S---------------------------------------------------------
----------SSSSSS-----------------------------SS---------------------------------
--------------------------------S-----------------S-----------------------------
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-----------------------S-----------S-----------S---SSS-S------------------------
-----------------------------------------------------------S--------------------
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--------------------------S----------S------------------------S-----S-----------
-------S--------------------S---------------S-----------------------------------
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SSSSS---------------------------------------------------------------------------
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-----------------------S---------------------------------------------S----S-----
--S---------S-------S-------S-----S----S----------------S--------------S--------
------S-----S--S---------S-S-------S------SS-S------------S---------S--------S--
----------------------------------------S---------------S----------------S------
-S---------------------SS------------------S----SS----------S-------S-----------
-------------------------S--S-----------------------------------------SS--------
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S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------------------------------------------S----------S------------
------------S-------------------------------------------------------------------
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>forward_473
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-----------------------------------------------------AAGTTGTCGTCTCTGGCTCG-------
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>reverse_2619
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----------------------------------------------------------TGCCGATGAAGAGTAGCGTG--
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