>input_sequence_80749
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-------------------------ATGGACAGGCTGAGGAGCGTGGTGCTGCGCAGGTGCAAGAGCCTGTCGCGGGCGA
GGAGCAGGCGGTCGTCGC------CCAGCTCCTACAGCAACCTCCGCTCCATGTCGGCTAGGGACGACGTCGCCGGAGAA
GATAGCCAGGCCGCGGCC---GAGGGGCCGTCGGCGGTGGTGTTCGTGGGCAGCTCGCGGCGGCGGTACGTCATCAGCGC
CAGGCACCTCCGCCACCCGCTGATCGCCGCGCTCATCGACGGCGACGCCGGCGATGGCGACGTGAGGAATAGCAAGGAGC
CGGTGGCCGTGAGGTGCGAGGTCGTGCTGTTCGACCACCTGCTGTGGATGCTCGACAACGCCGTCGACCTGCGCGCCGGC
GCCGGCGGCGAGGAAGACGCCGTCAGGGAGCTGGCCCAGCTCTACGCCACGTGCTAA-----------------------
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>chr5D_1_TraesCS5D01G061000
CAGGTGTGTGTTTTCTGGTACCCGTCTCCTGTAAACGGAAGCAGAAAAGCATAGGTGGATGTCAGTCTGCTCAAGTGGCT
ATTTTAAAGGGCAAATCTTAAGAGTATCTATAAGTCTGTGGAATTTGCTCTCGAGCAGCCGTTTGAGGTGCTCCAAGCCA
TTGTGTATGTTGGAGCTCCAGGTCATCCTGTACATTGTTACCTCATTTGTTTCCTGACGAATCCATAGTCCTCAT-----
---------ACAGAGAGCCAGGCTATCTGCTGTAAATTCATGGACGGATCCTGTGCAGGGGATGAGGTTCGTTTCTTTCG
CTGGAACATGTCATGGTATGCTGCCAGG-TTTTTTTGGCGCAGAAATCTGCATTTCCGCATTCGCGTCGTGAGATTTGCG
ACAACGTAAGGAAGTTCT--GAGGAACGAGCAACTTGTACCATCAAGGATACTCTGTAAAAGGATGCTCACTTTGCCACC
TATATAGC----TAAACTGTTCTTCAGTCTATATCTGCAGTAACATTTTCATGTCAATGCACTGTTAACGCATGCATGGT
TATGTCCTTGAGTAGCAAGTGGCTTGTGTACCTGAAACCGGTTGCTTC--------------------------------
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----------------------------------------------------------------AGCAGAGAGGACTGCT
TTTACATGATCATCGTTTTGTTGCGCTATCTTTGGTTATCTTAGCAACCAAGCTTAGC-CTTAATTAATCACCACTAACA
TG---------TAATTAGCCAACAACTTAGTCCACTCAGCAGCGCATCAATGGATGACGGTCCCATTCAGGTCAAGCCCT
ACCTATATCTGCACTCCCATTAATAACTAGGCCAACCCCCATGCAAGTGCGGTGAGAGCACTGATGGGCTACCTCACTTG
CCTCCCGCGACGTGCCACCCTCCCCCTCTAACCCCTCTCCACCAACACGACCCAC-----ACGTACGTAGTACTGTACTA
CACCTGCACCTAATTAACCTCGCTCTCTCGGCCTG---CAGATCCTCCACCTCCCA----------GTCTGCTTTGGTCT
GGTTTCCGCGCGCGTGCGTGCGTGCATGGACAGGCTGAGGAGCGTGGTGCTGCGCAGGTGCAAGAGCCTGTCGCGGGCGA
GGAGCAGGCGGTCGTCGC------CCAGCTCCTACAGCAACCTCCGCTCCATGTCGGCTAGGGACGACGTCGCCGGAGAA
GATAGCCAGGCCGCGGCC---GAGGGGCCGTCGGCGGTGGTGTTCGTGGGCAGCTCGCGGCGGCGGTACGTCATCAGCGC
CAGGCACCTCCGCCACCCGCTGATCGCCGCGCTCATCGACGGCGACGCCGGCGATGGCGACGTGAGGAATAGCAAGGAGC
CGGTGGCCGTGAGGTGCGAGGTCGTGCTGTTCGACCACCTGCTGTGGATGCTCGACAACGCCGTCGACCTGCGCGCCGGC
GCCGGCGGCGAGGAAGACGCCGTCAGGGAGCTGGCCCAGCTCTACGCCACGTGCTAACCCAGTTGCAGGTGATCGACTCG
TCGGTTGATATATA------------GTAC----------GATCAACGATGCTGCATGAACCAT--GCGTGCTGGTAATA
GTCCTCTCCGGATTTGATTGATTCTTTTTGTGTGTTCTTGCGCGAGATCTAAGATTCTCGGGCGCCAATGGGAAGATAT-
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------------------------ATAC-TTTGGGTTCGTT--------CGTGTAGGCAGAGCAGCTTGATAGCTAATAA
TGGTTTTGTATTTGTTCTAGCTAATGGTTTTGTATTTTGTCAAATGATGGGAAAAAGGAAGGAGTAATCAAAAAAGACTA
GAACTACTTCTAGCCAATCACCGTACAACTTGTATTGTTGAGATGCGTATTTTTTGCATTTAATTTTGTGTCGTGGCGAT
CTAAAGCGTATGTAAAGAGGTCGTGCTGTCTAAAGTAAATTATGT--ATACTTCCATTCCATTTCTTCTCTTATGACCCT
TGATCAGTTTATATATGTAACAATATGTGGTCTCTTAGGTTAATTTCAGTAAAGACTAAATGAATTCACCAATATGTATA
GCAACAAGAAGCAAAGCCTACGATCTCCATGGTTGATGCGCAGTGGCGGACCTAGAACGTATTTTGACTGGGGGCAAACT
ACTTGAGTGGGGGCATATTCTATAAAAGTTCAAAAAATTTAAGCATATTTTTCAGAAAATACAAGCAAATCTTAGTAGAA
TTTCAAATTTTGAGTGGGGGCTCAGGCCCCCACTCACCTCAATGTAGGTCCGCCCCTGTTGATGCGCGCAATGGCCACAT
TGCCTCCACTCATCCAACCGCGCAGCAAAACTTCATGACAAAGTTGCAGATGGTGTACCACCGATGCGTTAGCGACTTCA
CATGGCGTTCATGGATGATGTGCATATCATAAGGTGCGAAGTACTTTCTCCCATGAAATGAAGCATGCAAGCTTTGCCAA
AAAAGTCGGGCCCTTGTTCATGCCTACAAAGTCTGCAGATACGGCCAACCACGCATCACAAACAACTCACCCTCGAT
>chr5B_1
CAGGTGTGTGTTTTCTGGTACCCGTCTCCTGTAAACGGAAGCAGAAAAGCATAGGTGGATGTCAGTCTGCTCAAGTGGCT
ATTTTAAAGGGCAAATCTTAAGAGCATCTATAAGTCCGTGGAATTTGCTCTCGAGCAGCCGTTTGAGGTGCTCCAAGCCA
TTGTGTATGTTGGAGCTCCAGGTCATCCTGTACATTGTTACCTCATTTGTTTCCTGACGAATCCATAGTCCTCAT-----
---------ACAGAGAGCCAGGCTATCTGCTGTAAATTCATGGACGGATCCTGTGCAGGGGATGAGGTTCGTTTCTTTCG
CTGGAACATGTCATGGTATGCTGCCAGG-TTTTTTTGGCGCAGAAATCTGCATTTCCGCATTCGCGTCGTGAGATTTGCG
ACAACGTAAAGAAGTTCT--GAGGAACGAGCAACTTGTACCATCAAGGATACTCTGTAAGAGGATGCTCACTTTGCCATC
TATATAGC----TAAACTGTTCTTCAGTCTATATATGCAGTAACATTTTCATGTCAATGCACTGTTAACGCATGCATGGT
TATGTCATTG---AGCAAGCGGCTTGTGTACCTGAAACCGGTTGCTTGTACCATCAAGGATACTCTGTAAAAGGATGCTC
ACTTTGCCATCTACATATAGCTAAGCTGTTGTTCAGTCTATATCTGCAGTAACATTTTCATGTCAATGCACTGTTAACAC
ATGCATGGTTATGTCCTTGGGCAGCAAGTGGCTTGTGTACCTGAAACGAGATCCGGTTGCTTGGAGCAGAGAGCACTGCT
TTTACATGATCATTGTCTGTT----CTCTCTTTGGTTATCTTAGCAACCAATCTTAGCCCTTAATTAATCACCACTAAAC
ACAAGCTGTACTAATTAACCAACAACTTAATCCACTTAGCAGCGCATCAATGGATGATGGCCCCATGCAGGTCAAGCCCT
ACCTATACCTGCACTCTCATTAAGAACTAGGCCAACCCCCATGCAAGTGCGGTGAGAGCACTGATGGGCTACCTCACTTG
CCTCCCGCGACGTGCCACCCT---CCTCTAACCCCTCTCCACCAACACGACCCAC-----ACGTACGTA--------CTA
CATCTGCACCTAATTAACCTCGCTCTCGGCCCGCGGATCAGATCATCCACCTCCCCGTCTGCTTTGGTCTGGTTTCCGCG
C--------------GCGTGCGTGCATGGACAGGCTGAGGAGCGTGGTGCTGCGCAGGTGCAAGAGCCTGTCGCGGGCGG
GGAGCAGGCGGGCGTCGTCCTCCTCCAGCTCCTACAGCAACCTCCGCTCCATGTCCGCCAGGGACGACGTCGCCGGAGAA
GACAGCCAGGCGGTGGCC---GAGGGGGAGTCGGCGGTGGTGTTCGTGGGCAGCTCGCGCCGGCGGTACGTCATCAGCGC
CAGGCACCTCCGCCACCCGCTGATCGCCGCGCTCATCGACGACGACGCCGGCGATGGCGACGCGAGGAATAGTAAGGAGC
CGGTGGCCGTGAGGTGCGAGGTCGTGCTGTTCGACCACCTGCTGTGGATGCTCGACAACGCTGTCGACCTGCGCGCCGGC
GCCGGTGGCGAGGACGACGCCGTCAGGGAGCTGGCCCAGCTCTACGCCACGTGCTAACCCAGTTGCAGGTGATCGACTCG
TCGGTTGATATATA------------GTATACGATCAAGTGATCAACGATGCTGCATGAACCAT--GCGTGCTGGTAATA
GTCCTCTCCGGATTTGATTGATTCTTTTTGTGTGCTCTTGCGCGAGATCTAAGATTCTCGGGCGCCAATGGGAAGATAC-
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------------------------ATATACTTGGGTTCGTC--------CGTGTAGGCAGAGCTGCTTGATAGC---TAA
TGGTTTTGTATTTGTTCTAGCTAATGGTTTTGTATTTG------------------------------------------
-------TTCTAGCCAATCACCGTACAACTTGTATTGTTGAGATGTGTA-TTTTTGCATTTAATTTTGTGTCATGGCGAT
CTAAAGCGTATGTAAAGAGGTCGTGCTC-CTAAAGTAAATTATGTGTATACTTCCATTCCATTTCTTCTCTCATGACCCG
TGATCAGTTTATATATGTAACAATATGTGGTCTCTTAGGTTAATTTCAGTAAAGACTAAATGAATTCACCAACATGTATA
GCAACAAGAAGCAAAACCTACGATCTCCATGGTTGATGCG----------------------------------------
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------------------------------------------------------------------CGCAATGGTCACAT
TGCCTCCACTCATCCAACCGCGCAGCAAAACTTCATGACATAGTTGCAGATGGTGTACCACCGATGCGTTAGCGACTTCA
CATGGCGTTCATGGATGACGTGCATATCGTAAGGTGCGAAGTACTTTCGCTCATGAAATGAAGCATGCAAG---------
-----------------------------------------------------------------------------
>chr5A_58
---------------------------------------------------------GATGGCAGCCTGCTCAAGTGGCT
GTTTTAAAGGGCAAATCTTA-GAGTATCTATAAGACCGTGGATTTTGCTCTCGTGCAGCTGTTTGAAGT----CAAGTCA
TTGTGTATGTTGGAGCTCCAGGTCATCCTGTACATTGTTACCTCATTTGTTTCCTGACGAATCCATAGTCCTGAGCAGGT
TTGGTTGACACAGAGAGCCAGGCTATCTGCTGTAAATTCATGGATGGATCCTGTGCAGGGAC-GAGGTTCGTTGCATTCG
TTGGAACATGTCATGGTATGCTGCCTGGTTTTTTTTGGCGCAGAAATCTGCATTTCCGCGTTCCTGTCGTAAGATTTGCG
ACAACGTAAAGAAGTTCATCGAGGAACGAGCAACTTGTACCATCAAGGATACCCTGTAAAAGAATGCTCACTTTTGCCTT
CTATTATAGCTATAAATTGTTCTTCTGTCTATATATGCCCATT-ATTTTCATGTCGATGTATACTGTTAG---GCATGGT
TATGTCCTTG---AGCAAGTGGCTTGTGTACCTAAAATCCT---------------------------------------
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-------------------------------------------------------GTTGCTTGGAACAGAGCGCACTGCT
ATTACATGATCATCGTCTGCG----CTCTCTTTGGTTATCTTAGCAACCACGCTTAGC-CTTAATTA-------------
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>chr5A_685
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-----------TAATTAACCAACAACTTAATCCACCCAGCAGCGCATCAATGGATGACGGCCCCAGTCAGGTCAAGCCCT
ACCTACATCTGCACTCCCATTAAGAACTAGGCCAACCCCCATGCAAGTGCGGTGAGAGCACTGATGGGCTACCTCACTTG
CCTCCCGCGACGTGCCACCCTCCCCCTCTAACCCCTCCCCACCAACACGACCCAACACGTACTTACGTA--------CCA
CATCTGCACCTAATTAACCACGCTCTCGGCCTGCGGATCAGATCATCCACCTCCCA----------GTCTGGTTTCCGCG
CGCGCGTGCGTGCGTGCGTGCGTGCATGGACAGGCTGAGGAGCGTGGTGCTGCGCAGGTGCAAGAGCCTGTCGCGGGCGG
GGAGCAGGCGGGCGT---CCTCCTCCAGCTCCTACAGCAACCTCCGCTCCATGTCGGCCAGGGACGCCGCCGCCGGCGAG
GACAGCGAGGCGGCGGCTGCAGAGGGGGCGTCGGCGGTGGTGTTCGTGGGCAGCTCGCGCCGGCGGTACGTCATCAGCGC
CAGGCACCTCCGCCACCCGCTGATCGCCGCGCTCATTGACGACGCCGGCGGCGGCGGGGTCGGGGATGGTAGCAAGGAGC
CGGTGGCCGTGAGGTGCGAGGTCGTGCTGTTCGACCACCTGCTGTGGATGCTCGACAACGCCGTCGACCTCCGCGCCGGC
GCCGGCGGCGAGGACGACGCCGTCAGGGAGCTGGCCCAGCTCTACGCCACGTGATAGCAAC-TTGCAGGTGATCGACTCG
TCGGTTCATATATA------------GTACTCCGTATA-TGATCAACGATGCTGCATGAACCATATGCGTGTTGGTGTTG
GTCCTCTCTGAATTTGATTGATTCTTTTTGTGTGTTCTTGCGCGAGATCTAAGATTCTCGGGCGCCAAGTGGAAGATACT
CCCTTCGTTCGGAATTACTTGTCTCGGAAATGGATATATCTAGAATTAAAATACGTCTAGATACATTCATTTTTGCAACA
AGTAATTTTGAACGGAGGGAGTATATAC-CTTGGGTTCGTTCGTAACTTCGTATAGGCAGAGCTGCTTCATAGC---TAA
TGGTTTTGCATTTGTTCTAGCTAATGGTTTTGTATTT-------------------------------------------
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>chr2B_993
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-----------------GTGCGTGCATGGACAGGCTGAGGAGCGTGGTGCTGCGCAGGTGCAAGAGCCTGTCGCGGGCGG
TCGTCATCG-----------TCCTCCAGCTCCTACAGCAACCTCCGCTCCATGTCCGCCAGGGACGACGCCGCCGGCCAA
GACAACATGGCGGCGGCC---GAGGGGGCGTCGGCAGTGGTGTTCGTGGGCAGCTCGCGGCGGCGGCACGTCATCAGCGC
CAGGCACCTCCGCCACCCGCTGATCGCCGCGCTCATCGACGACGACGCCGGCGATGGCGACATGAGGAATAGCAAGGAGC
CGGTGGCCGTGAGGTGCGAGGTCGTGCTGTTCGACCACCTGCTCTGGATGCTTGACAACGCCGTTGACCTCCGCGCGGGC
GCCGGCGGCGAGGACGACGCCGTCAGGGAGCTGGCCCAGCTCTACGCCACGTGCTAGCCCAGTTACAGGTGATCGAGTCG
CCGGTTGATATATACGTCAGGGAGTAGTAC----------GATCAACC---CTGCATGAACCAT--GCGTGTTGGTGATA
CTCCTCTAAGGATTCGATTGATTCTTTTTGTGTGTTCTTGCGCGAGATCTAAGATTCTTGGGCGCCAAGTGGAAGATAT-
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------------------------ATAC-TTTGGGTTCGTT--------CGTATAGGCAGAGCTGCTTGATAGC---TAA
TGGTTCTGTATTTGTTCTAGCGTCAATG----------------------------------------------------
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>SNPs
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------------------------------------S-------------------------------------------
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---------S--------------------------------------------------------------------S-
----------------------------------S---------------------------------------------
----------SSS----------------------------------S--------------------------------
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-------------------------------------------------------------------------S------
----------------S-SS-SSSS--S--------------------------------------------------SS
SS---------------S-----------S------------------------------S-------------------
-----------------------S--------------------------------------------------------
---------------------------------------------------------------------SSSSSSSS---
--S------------------------SSSS-SS----------S--------------------------S---SSS-S
S-SSSSS---S--------------------------------------------------------------------S
-----------S-----S----------------------------------------S---------------------
--S--------S---------------S----------------------------------------------------
-----------------------------------------S--------------------------------------
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--------------S-----------------------------------------------------------------
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---------------------------------------------------------------S----------SSS---
-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------------------------------------S---S----------------------S-------
---------------------------SS------------------------------------------S-------S
------------------------------------------------------------------------S-------
---------------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----
----------------------------------------S---------------------------------------
------------------S---------S-------------------S-S--------------------SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1203
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---------------------------------------------------------------CCAGTCTGCTTTGGTCT
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>reverse_2487
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------ATTTTGAGTGGGGGCTCAGG------------------------------------------------------
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