>input_sequence_80743
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-----------------------------------------ATGAAAAGACTACAGCGCGAGATGCAGCCGGCGAAGGTG
AAGCCGGCGCCGGAGCCCAGGACCAAGGGCGCCGCGGCGCCTGCGCGGGCGCTGGCGGCGGAGGCCTTCACGGCGCGCGA
GCTCGACGCGGCGGAGCAGCTCATCCATCTCAGCGAGAGCAGCGCGTCCTCGGGCACCACGCGCGCCCACCCCGTCGCCT
ACGCCGCGGCCTCGGGCGGCTCCTCCCGGCGCTCCGTCAACGGCCTGCAGGCGCCGGCGTCGGGCGCGGTTTTCCTTGGC
GGTTGCGCGAACCGGGAGGAAGATGAGGAGCAGGAGGTCGCCGGGAGCCAGCGGAGGGGGAAGCGGTACCGCCTGATCGC
CGAGATCTACGCCGCGACGGAGGAAATCGGAGGCCGCAGCGGCCGGAAGAACAGAAAGGATTAG----------------
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>chr5A_1_TraesCS5A01G332900
GCATACAACTACATACCATGACATATGTGTAGCGATAATTGTCGATAGAGGGAGAAGTTGGATAATACATCTAATGTACT
GCATCAAGCTATCTGCATGAACTTATAGTGGTAACTATGGGCATGAAAACTTGCTCAGGCCAGGTGTCCGGTGTTTCCTC
CTCCCCATGGAAAGTTCCCTAAATGATTAGGTTTTCTCCTCCTCCCATCGGCGTCGCCGCCGGTCCGTCCCGCCTTCGAT
GACCTTTGGGTTGTGGAGGTGTGGAGGACCTCGGCCCCTCGTTGGCTAGAGGGACCACGCTCTCATTCTTATTAGGTTTA
GCCTCTTTGTTGGGGTTGCATGGCGGCGGCGATGTCTCTTTGTAGGAATAATGTCTCCCACACTCAGTCCCTTCACTGAT
GGTGTTGGCGTCGTCAGAGGGCATGTGGAAGTGCTTCTCCATCGGATCATCCGGGATTTGGTCGGTGCTGGTCTTTGATG
GACCTAGTTTGGATTCACTTCTCCCTTCATCGGTGATGGTTGTTCTTCTGATGCGCTTGTCCTGTAGGGTCTTATCATGA
CAACTTTTGACTATGTGCCACAACAACTTTTGCCCAGCTCTGATAAGGGAGGGGCAATAATGGTAGTGCGCCTTTGGCAC
ACTCTAGTGCTTGCAGTCGTCAAACCTGTATAATTGTTA-TTAACTCCTATGGTCTTTGTACTACCATGATTGATTATAA
ATAGATCGAATGTATCTCCCGAAAAAACTAACGCCTATTTGATTTGGAGCCCGGTTTGATAATTACTCAAGGTACTTCTA
AGAGTATTTTTCGCAAAAAAAAAGTCAAGGAGGCAAAAGTTTGCCCGTATTTTTTTGAAAGCCCATCCTAAATAGAAAAT
GACGAAAATTAATAAAGCCAACCTTCTCGTTTGCGAAGAATAAAAACGTAGCCTTCTCAAAAGCAAAAGAAATTAGCCGA
CGAGCGTCCACGGCAACCAACCCACCCTGGCCAAATCTACCATGAAAAGACTACAGCGCGAGATGCAGCCGGCGAAGGTG
AAGCCGGCGCCGGAGCCCAGGACCAAGGGCGCCGCGGCGCCTGCGCGGGCGCTGGCGGCGGAGGCCTTCACGGCGCGCGA
GCTCGACGCGGCGGAGCAGCTCATCCATCTCAGCGAGAGCAGCGCGTCCTCGGGCACCACGCGCGCCCACCCCGTCGCCT
ACGCCGCGGCCTCGGGCGGCTCCTCCCGGCGCTCCGTCAACGGCCTGCAGGCGCCGGCGTCGGGCGCGGTTTTCCTTGGC
GGTTGCGCGAACCGGGAGGAAGATGAGGAGCAGGAGGTCGCCGGGAGCCAGCGGAGGGGGAAGCGGTACCGCCTGATCGC
CGAGATCTACGCCGCGACGGAGGAAATCGGAGGCCGCAGCGGCCGGAAGAACAGAAAGGATTAGGCGACGAGGTGGAGGG
AGGAGAGGAGAGACGAGAGGGATCTTCTTGTAATTAGCGTAATTGCTGGGGGGTAGCTGGTAGTTCGTGCTCGCAGTCCT
CCCCTTCCTCGCCGGAGAGGAATCGCCATCGATATACTGTAAATTAAAGCTTCATCTT-TGCAATAAGACG---TACTAA
TTGGTTGGAGTTCCATCCCTTGTTTGTGTCGAACTGTTGATCATGACGGCTTCTGATTTCAGAACTGAT--TTGTCGTCT
CCTACCGTGTTTTCCTACCTCCTACTGCTTATCGATGATCTCCGTGCGCAGCGACGAGGATCAGATCAGGTCCGGCCTTG
GCTTCGG-------------------------------------------------------------------------
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---------------------------------TTAGGTAGCTCTGTGCAGCGCGGCGAGGCGAGGCCGATCGATTTCGA
TTGCGCCCGCGCGTGCATGCAATTTTCGCAATTAACTATTCAGAGGCTGATGCGAGTGCGATTCGATCCAC--GATCTGA
GAAATTCGTAGTAAGAGCACTGGTCTGGACTTCAATTCCCGGCGCGTATGTGGTCAGGGATGCTTGCGGTGTAC-TTGAT
CAAAAGAATTTGTGGAGGACCTAGCACGAGCTGCCGGCTGGTGCCTGGTGGCGCCCAGGCGGAATGGCGGTACAGGCTTC
TTACTACGGCGAGGCAGCGAGGTTCCGATCTAATTAAGCGCTGCCTCGCCATACTGGTTTGGTCGATTTAGGCGAGTCCA
GTTTCTTTCATGCAACATGAAGGAGTGACTGACGGTAGCTGCTGAAGCAGAGACAATGGTGGGGATAAATGGAATGTTCT
AGAAGCTTCCAAGCGAGTCCTGGAGGTAGGCAGGCAAAGCCGTTCATGCGAGAGTTTCATTAGATCTTGCACATGTACGT
GATGTCCTATTAAATCCAACGAGCTTATCTTTGACCGCTAAGGTGTGACTGTTACCGATCATGACTGATGACTACATATA
AATTTGTTTAATTCTTCAGGTTGAAATGATCTGAACGATGGA-TCATTCTCAGTTACGTA
>chr5B_1
GCATACAACTACATACCATGACATATGTGTAGT----------GATAGAAGGAGATGTTGGATAATACATCTAATGTACT
GCATCAAGCTATCCGCATGAACTTGTAGTGGTAACTATGGGCATGAAAACTTGCTCAGGCCAGGTGTCCGGTGTTTCTTC
CTCCCCACGGAATGTCTCTTAAATGATTAGGCTTCCTCTTGTCG---TCGGCGTCGCCACCGGTCCATCCCGCCTTCGAT
GGCCTTTGGGCTGTGGAGGTGTGGAGGACCTCGGCCCCTTGTTGGCACGAGGGACCACACTCTCGTTCTTATTAGGTTTA
CCCTCTTTGTTGGGGTTGTGTGGTGGCGGTGACATGCTTTTGTAGGAATAATGTCTTCTATGCTCAGACCCTTCACTGAT
GGTGCTAGTGTCGTCAGAGGGCATGTGGAAGTGCTTCTCCATCGGATTATCCGGGATTTGGTCGATGCTG--CTTTGATG
GACCTGGTTTGGATCCACTTCTCCCTTCATCGGTGATGGTTGTTCTTCTGGTGCGCTGGTCCTTTAGGGTCTTAGCATGA
CAACTTTCGACTATGTACTACAACAACGTTTACCCGGCTCTGATGAGGGAGGGACAATAATGGTAGTATGCCTTTGGTAC
ACTCTAGTGCTTGCAGTCGTCAAACCTGTATAATTGTTATTTAGCTCCGATGGTCTCTATACTACCATGATTGATTATGA
ATAGATGGACTGTTTCTCCTGAAAAAACTAATGCCTATTCGATTCAGAGCTAGGTTTGATATTTATCCAAGGTACTTCTA
AGAGTATT---CGCAAAAAAAT-----AGGAGACAAAAGTTTGCCCGCATTTTCTTTAAAGCCCAGCCTAAATAGAAAAT
GGCGAAAATTAATAAAGCCAACCTTCTCATTTGCGAAGAATAAAAACGTAGCCTTCTCGAAAGCAAAAGAAATTAGCCGA
CGAGCGTCCACGGCAACCAACCCACCCTGGCCAAATCTACCATGAAAAGACTACAGCGCGAGATGCAGCCGGCGAAGGCG
AAGCCGGCGCCGGAGCCGAGGACCAAGGGCGTCGCGGCGCTTGCGCCGGCGCTGGCGGCGGAGGCCTTCACGCCGCGCGA
GCTCGACGCGGCGGAGCAGCTCATCCATCTCAGCGGGAGCAGCGCGTCCTCGGGCACCACGGGCGCCCACCCCGTCGCCT
ACGCCGCGGCCTCGGGCGTCTCCTCCCCGCGCTCCGTCAACGGACTGCAGGCGCCGGCGCCGGGCGCGGTTTTCCTTGGC
GGTTCCGGGGACCGGGAGGAAGAGGAGGAGCAGGAGGTGGCCGGGAGCCAGCGGAGGGCGAAGCGGTACCGCCTGATCGC
CGAGATCTACGCCGCGACGGAGGAAATCGGAGGCCGCAGCGGCCGGATGAACAGAAAGGATTAGGCGACGAGGTGGAGCG
AGGAGAGGAGAGACGAGAGGGATCTTCTTGTAATTAGCGTAATTGCTGGGGGGTAGCTCGTACTTCGTGCTCGCAGTCCT
CTCCTTCCTCGCCGGAGAGGAATCGCCATCGATCTACTGTAAATTAAAGCTTCAATCGATGCAATAAGACGTACTACTAA
TTGGTTGGAGTTCCATCCCTTGTTTGTGTTGAACTGTTGATCATGACGGCTTCTGATTCCAGAACTGATATTTGTCGTCT
CCTACCATGTTTCCCTACTTCGTACAGCTTATCGATGATCTCCGTGCGCTGCGACGAGGATCAGATCAGGTCCGGCGCGG
TTAGGCCAACTCCACCACGCGACCCTATCCTGTCCGTCCCCGTCCGTTTGGGGTAAAAGGGACAAACGAGACGGCCCAGC
GTGCGGGCGTAAACGGACTTTTGTCCGCTTTGTGTCCGCTTTCAACCCATCCGCGGCCCAAGTTTGCGCCGCTTTTAGGA
TAAAACGGACACCATGCAGACGCGCGGGTCGTCTGCGCGTGTCCTTCCCTGGTCCGCCCGTCGGTGGCACAGGACGGGCC
TTTTTCTATCCGCCCCCTCCCTCCCTCCGGCCGCATCCACTCCACTCTTCCCCTCTCTTCCCCACGTCGCTGCCGGTCGC
CCGCTGCCATTGCAGCCATGCAACTCGGACGCGCGTTTGCCCAGCCCCTTCCTCTCGTCGTGCCGAGCTACCCAAGCACG
GCCACCTTGTTTGCGCGCCCGTCGGCCGGATTTGGGGCGGATCCGGTCGGTCTTGAGCTCGCCCAGCTGTGGGAGGCTGG
GCCGCGCCATGGACTGCCCGGGAACCTCGCCGGAAAGCCCTGGCAGGCAGTGGCTCGTCCTCTAGCCGTTCGGATCTGCA
CCGTTGGTGGCCCGCCGGCAGATACGCGAATGGCGGCCGGCCGGGCTCGGTGCTTGCCCAAAAGCTCGTCGGCGCACCGT
TGCCCCTCATCAAGTGCGACCACTGCCCAAGGGTGGTCGTGCGCCGCGTGCCTACAACGCCGGAGCATCCCGGATGGGTG
TTCATCAAGTGCTTAAACGATGGGGTATGTGCTCTTTTAGCTTCGGTTTGTGCTTTCGATTATACTAGTGGTGCTAATTT
TAAGTTTTATTGTGTAGAACAGATGCAAGTTTTGGTATTGGGAAGAAGAGTACATCGATATGTTGATAGAGCGAAATGTA
TTGCATGTTCGTCCACTTTTAGCTAGCCTAGAGGCTTTAGATGAGACAAGTGCACTTGTTGCTAGATTAGAGACTAGGCA
CGATACTATGTGCGAAGAAGCAACAAGGCACGATACTACGTGTGAGGAAGCAACGTCGACTTCTGGCTTGAAGAAGAAAG
GAGGGTGCAACGTCGTGCCTCCTCCACAGATCAACAATGAGTGCATCGAGAAGGCGCTAACCCAACTCAAGGGAGTAGTT
ATGAAAGTTGGGTATCTTCTCAAATGTATTCTTGTGGTTCTTGTTTTCTTTGGCCTTGCTTTACTAGTCAAAATGTAATG
ATGTATTATCTTATGGTTCTTGTTTTTTTGGCCTTGCTTTACTAGTCAAAATGTAATGATGTATTATCATGTACCAAAAA
TGAATGATAAAAAAAATTAAGGACTTGCAAAGAAATATACGCGGACAGGATGGGGCAAATGGATGCGGCCGCGCGCTGGG
CGCACGGCCACCGCATCCTAGGACAGGTCCAAACACGACCTCAAATCCCTACCCAAACAGACAGAATTCGGATAAAACGG
ACGTCTGTTTGAAATCACACGGTGGAGTTGGCCTTAGGTAGCTCTGGGCAGAGCGGCGAGGCGAGGCCGATCAATTTCGA
TTGCGCCCGCGCGTGCATGCAATTTTCGCAATTAACTATTCAGAGGCTGATGCGAGTGCGATTCGATCCACACGATCTGG
GAAATTCGTAGTAAGAGCACTGGTCTGGAGTCCAATTCCTGGCGCGTACATGGTCAGAGATGCTTGCGGTGTGCTTTGAT
CAAAAGATTTTGTGGAGGAGCTAGCACCAGCTGACGG-------CTGGTGGCGCCCAGGGAGAATGGCGGTACAGGCTTC
TTACTACGGCCAGGCAGCGAGGTTCCGATCTAATTAACCGCTGCCTCGCCATACTGGTTTGGTCGATTCAGGCGAGTCCA
ATTTCTTGCATGCAACATGAAGGAGTGACTGACGGTAGCTGCTGAAGCAGAGACAATGGTGGGGTTAAATGGAATGTTCT
AGAAGCTTCCAAGCGAATCTTGGAGGTAGGCAGGCAA-GCCGTCCATGCGAA------ATTAGATCTTGCACATACATGG
--TGTCCTGTTAAATCCAACTAGCTTATCTTTGACCACTAAGGTGTGACTGTCACTCATCATGACTGATGACTACAGATA
AATTTATTTGATTCTTCAGGTTGAAATGATCTGATCGATGGAGTCATTCTCAGTTAC---
>SNPs
--------------------------------SSSSSSSSSSS------S-----S------------------------
-------------S----------S----------------------------------------------------S--
-------S----S--SS-S------------S--S---S-SSSSSSS-----------S-------S-------------
-S--------S----------------------------S------SS----------S-----S---------------
S-----------------SS---S-----S--SS-SSS------------------S-S-SS-----S------------
----S-S-S--------------------------------------S----------------S-----SS--------
-----S--------S-----------------------------------S------S-----S----------S-----
-------S--------S-S--------S---S---S--------S--------S-------------SS--------S--
-------------------------------------------S----S-------S-S-------------------S-
------S--S---S-----S-----------S-------S----SS----SS---------S---SS-------------
--------SSS----------SSSSSS-----S--------------S-----S--S--------S--------------
-S--------------------------S-----------------------------S---------------------
------------------------------------------------------------------------------S-
-----------------S-------------S--------S-----S-------------------------S-------
-----------------------------------S-------------------------S------------------
------------------S--------S---------------S---------------S--------------------
----S--S-S-------------S--------------S-------------------S---------------------
-----------------------------------------------S------------------------------S-
----------------------------------------------------------S---S-----------------
-S-------------------------------S--------------------SSSS----------------------
-----------------------------S----------------------------S---------------------
------S-----S-----S--S---S-----------------------S--------------------------SSS-
SSSSSSS-------------------------------------------------------------------------
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----------------------------------------------S----S--------------------S-------
-------------------------------------------------------------------------------S
-----------------------------S-S-------S--------SS-------S--------------S-------
-------S-----------S-------S-----S---SSSSSSS---------------SS-------------------
----------S--------------------------S------------------------------S-----------
S------S--------------------------------------------------------S---------------
----------------S--S-----------------S-----S-------SSSSSSS----------------SS-S-S
SS------S-----------S---------------S---------------S--SS-------------------S---
-----S---S------------------------S----------------------SSS
>forward_596
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----------------GCCACAACAACTTTTGCCCA--------------------------------------------
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>reverse_3718
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-------------------------------------AGCCGTTCATGCGAGAGTTT-----------------------
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