>input_sequence_80740
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----------------------------------------------------------------------------ATGG
CCAGCTCCCAGTCATTCTATTTGCAGCACATCAGTCACAGCTCGCAAGAACCTGA------------ATCAAACATGTCC
CGGCCATTCCCTCCACTGTTCGTCACACTGGTCCTGCTGCTGCTAACGTCGACCTCGTCGCCGGCCACCGCCGCGGCAGA
GATCGCGGAGGCGCCGTCCGCCGTTGGCTGCAGCGGGAGCGCGGAGGCGGCGTCGCGGGTGGTGGCGGAGAGCTGCACGG
ACGACATCGTCAGGTCCTTCTTCGGCGTGCGCGGCAGCGACCTCTGCTGCCGCGCGCTGGAGACGGCCGGCGCCGGGTGC
TACCGCGCGGCGTTCTCCGGCTCCCCGTTCGCCGATATCTACCCGACCATCCTCGGTAACGTCTGCGGCCTCGCCGTGGC
TCCCAGCCCCGGGGAGCGGTCGTACTACTAG-------------------------------------------------
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>chr5A_1_TraesCS5A01G211400
TCTCTATTCATGCTTCGTTCGTGTCGTGGTGAATGGTTCGCCGGCGCGGTTCGTTCGGCCGGCCGGAGGCGTTTAGCGTG
TTCCCGTGTTTCGTCCGGGATGGGCGCCGGGCCTGTGGCATTAAACCACTGCTGTTTTTGTAGGGCGTGTGTGTGTGTGT
GTGTGTCCCATAGGCCATAGCCTTATGATTGCACGGCACAGGGATTGGA----TTCCGGCAGCTGGATGCATGTAATTAC
TACTCCCTTCATTCCAGCTAACTTTAATACAAAGTTGGGTTATCTATTTTGAAACGGAGGGAGGATATATGATGGTCTTT
TGGTTAGTCTGGTATCGTATCTTCTAGGCTAGGCTAGCTTGTTTGAAAGCTAGCCGTGTGGTACTACGTCAAAAAGAAAA
CAGATCACC----------------TAAGCTAGTT----CGGGTGCTTCCAATTCCATCATGACTTTGAGGCTGGAATAA
TGTTGCCTCCAGTTTAGTCATGCGCCCATACTGGAGTGGCCGGTCCTACATGTGTACAGCTGTA---CCTACGAATTTCT
TGAAGGATTGATGCCCTCTTTATAATAAATAATAATAG----------TTTTTTTGCAAAGCTCTTTCTTTTTACCAGAA
AGAATAATCTTAAGAGTTTTTCCCCCGCAAAG----------------------------------------ACAACTCT
TAAGAATTGAAGGGGTAAAATTTAATATAGGTTGGCCCATGAAGAACTTTCT----------------------TTGAGG
ATCTGAAAACTTTCTAGACGCTAAACCGGCCCAAATAAAGCCTGTTGGTTCTATTCATTAGGCAG--------------T
TCTCAAAGTTCCCGA--CGTTCCGTGTAGTCTGGAGCATCGGGAGAAAATCCGTGTGGGCCATGCAAGCATAACTGTCAC
CGCCTGCGCGTGAATACAAACGTTTTCACTAATGTAAGAAATAAAAAACGCGTGGATACAAACTCCGGTGCAGCTTACGG
ATCAGCAAAACGCGCGTTGCTGATTCGAAACTAAGAAACGGAGGAGACAACCGCACATCGCTCAACCATA-AATTCATGG
CCAGCTCCCAGTCATTCTATTTGCAGCACATCAGTCACAGCTCGCAAGAACCTGA------------ATCAAACATGTCC
CGGCCATTCCCTCCACTGTTCGTCACACTGGTCCTGCTGCTGCTAACGTCGACCTCGTCGCCGGCCACCGCCGCGGCAGA
GATCGCGGAGGCGCCGTCCGCCGTTGGCTGCAGCGGGAGCGCGGAGGCGGCGTCGCGGGTGGTGGCGGAGAGCTGCACGG
ACGACATCGTCAGGTCCTTCTTCGGCGTGCGCGGCAGCGACCTCTGCTGCCGCGCGCTGGAGACGGCCGGCGCCGGGTGC
TACCGCGCGGCGTTCTCCGGCTCCCCGTTCGCCGATATCTACCCGACCATCCTCGGTAACGTCTGCGGCCTCGCCGTGGC
TCCCAGCCCCGGGGAGCGGTCGTACTACTAGCCTAATCTCCGGTTGTAACCGAAGTTGA-GAAAACGAGATGTAATTATA
AGATCATCTGAAATAAAATCGGCTACGTGGT-------------------------------------------------
-------------------------------------ACAAAGTCCAATTCGGTTCCTTTAAAAAGTTCAATCGGAGCAC
GTATGC-------AA-----GACGTATAAAATGGACATCTCCTCCATCGCACGAGTCGCGGTCGCTGACTCACTGCGGGC
GTACTTTTCTCTACGTGAAAATGACAGGGTTATCGTCACGGAGAAAAAGAACGGGAAGACGCAGCGCCAGCGCAAAAGCG
TGGCAAAGACACATCCACTTCAGATCGGCCACG-----------------------------GCCTGCTCTTAAAGGGAA
GGGCGCAGTTTACATCGACAAAAAC-------AAAGGAAAAGAAAAGAAAATCCTCCTAGCTGAGGTTGAAGGTGAAATA
TATGATCTAGAG---------TAAATCCTTAGTTACTGCTATGAAACTGACCAGTGGATAATGGATCCAGGAATATGAAG
AAACGGGGTGAAAAGCAGTGTCCCTGAATCCTAAGCTGTCGGTACATGGTCGAATTCAGTATTTCTCTTTTCCCGAGTTT
TTTGGACAATGCTGACTTTGCCGGAACT-TTACCTGATCCGAACGCGATTGATGTTACTTCCTTCAGTGGAGCAAGTGGT
AACTCAGTGGAGCCGAGGTTTTCTTTTTAATCTCACCAAAAAAAAAAAAAAACTCAGCGGGGAACATCGAGTCTCCACTT
AGAACACACGTAGGTTCAGAGATCTGCTCGTGACTGTCTATTTTTCAATACTATAACCGTACCCTTTTCCTCTCTTTTCT
GATTCCGGCAGTGGAAATTAATAAGTCGATCTAAATCTCTCGGCTCCGATTTGCCCTTTCTTTGCAGTCAT---------
-GGCCATGAGCATTAATCAATCAATTAACGCCATGAGCACTGATCGGAGTAGGTTCCATTACCAAAACATTTTCAAACGT
TTTTTTTACTTCTTTTGTTATGGTTTAGCACGCTGGACAGAAAGTACGAGACCATCGTGAATCATC
>chr5B_1
TCTCTATTCATGCTTCGTTT-----GTGGTGAATGGTTCGCCGGTGCG----GTTCGGCCGGCCGGGGGCGTTTAGCGTG
TTCCCGTGTTTCGTCCGGGATGGGCGCCGGGCCTGTGGCATTAAACCTCTGCTGTTTTTATAGGGCGTGTGTGTGTC---
--------------CCATAGCCATATGATTGCACGGCACAGGGATTGGATTCCTTCCGGCAGCTGGATGCATG-------
-----------------------------------------------------------------------ATGGTTTTT
TGGTTAGTCTGGTGTCGTATCTTGTA-GCTAGGCTAGCTTGTTTAAGAGCTAGCCGTGTGGTAC---GTCGAAAAGAAAA
CAGATCACCGACGCGCAGAGTGAGCTAAGCTAGTT----CGGGTGCTTCCAATTCCATCATGACTTTGAGGGTGGAATAA
TGTTGCCCCTAGTTTAGTCATGCGCCCATACTGGAGTGGCCGGTACTACATGTGCACAGCTGTAGTACCTACGAAGTTCT
TAAAGGATTGCTGCCCTCTTTATAATAAAAAAATAGTCC--------TTTTTTTTGCAAAGCTCTTTCTTTTTAGCAGAA
AAAATAATCTTGAGAGTTTTTCCCCCGCAAAG----------------------------------------ACAACTCT
TAAGAATTGAAGGGGTAAAATTTAATATACGTTGGCCCATGAAGAACTTTCTTTCAGGTTCTGGAGACTT----------
----------TTTCTAGACGCTAAACCGGCCCAAATAAAGCCTGTAGGAGCTATTCATTAGGCCTGGCCCAATATGCACT
TCTGAAAGTTCGTGA--CATTCCGTGTAGTCTGGAGCATCGGGAGAAAAACCGTGTGGGGCATGGAAGCATAACTGTCAC
CGCCTGCGCGTGGATACAAACGTTTCTACG-----AAGAAATAAAAAACGCGTAGATACAAACTCCGGTGCAGCTTACGG
ATCAGCAAA-CGCGCGTTGCTGATTCGAAACTAAGAAACGAAGGAGACAACCGCACGTCGCTGAACCATA-AGTTCATGG
CCAGC-------CATTCTATTTGCGGCACATCAGTCACAGCTCGCAAGAACCTGAATTCCAAGTGGTATCAAACATGTCC
CGGCCATTCCCTCCACTGTTCGTCCTACTGGTCCTGCTGCTGCTAGCATCGACCTCGTCGCCGGCCACCGCCACGGCAAA
GATCGCGGAGGCGCCGTCCGCCGTTGGCTGCAGCCGGAGCGCGGAGGCAGCGTCGCGGGTGGTGGCGGAGAGCTGCACGG
ACGACATCGTCAGGTCCTTCTTCGGCGTGCGCGGCAGCGACGTCTGCTGCCGCGCGCTGGAGACGGCCGGCGCTGGGTGC
TACCGCGCGGTGTTCTCCGGCTCCCCGTTCGCCGATATCTACCCGACCATCCTCGGTAACGTCTGCGGCCTCGCCGTGGC
TCCCAGCCCCGGGGAACGGTCGTACTACTAGTCTGTTT----GTTGTAACCGAAGTTGACGAAAACGAGATATTATTATA
AGATCATCTGAAGTAAAATCGGCTACGTGGTGTACAAAGTTCAGTTCCGTTCCTTAAAGA--GGTTAATAATATGGTCAG
AATTCAGAA---------------------------CACAAAGTTCAATTCAGTTCCTTAAAAAAGTTCAATCGGAGTAC
GTATGTAGACAATGTAGTAGGACGTATAAAATAGACATCTCCTCCATCACACGAGTCGCGGTCGCTGACTCACTGCAAGT
GTACTTTTT-CTACGTGAAAATGACAGCGTTATCGTCACGGAGAAAAAGAACGGGAAGACGCAGCGCCAGCACAAAAGCG
TGCCAAAGATACATCCACTTCTCTC--GCCACTGTCTAATGTCTGCTCCTTCTCTCGCCACAGCCTGCTCTTAAAGGGAA
AGGTTTAGTTTCCATCGACGAAAAG-------AAAGGAAAAGAAAAGA------TCCTAGCTGGTTTTAAAGATGAACAA
------------------ATCTAATTCCTTAGTTACTGCTATGAAAATGACCAGTGAATAATGGATCGAGGGATAAAGA-
--AAAGGGTGAAAAGCAATATCCCTGAATCCTAAGCTGTCGGTACATGGTCGAACTCAGTACTTCTCTTTCCCTAG--TT
TTTGGATAATGCTGACTTTGCCGGAACCCTTGCCTAATCCGAACGAGATTGATGTTACTTCCTTCAGTGCTGATCAAGT-
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>chr5D_69
--------------------------------------------------------------------GCGTTTAGCGTG
TTTCCGTGTTTCGTCCGGGATGGGCGCCGGGCCTGTGGCATTAAACCTCTGCTGTTTTTATAGGGCGGGC--GTGTC---
--------------CCATAGCCATATGATTGCACGGCACAGGGATTGGA----TTCCGGCAGCTGGATGCATGTAAT---
----------------------------------------------------------------ATATACGATGGCCTTT
TGGTTAGTCTGGTATCGTATCTT-----CTAGGCTAGCTTGTTTGAACGCTAGCCGTGTGGTAC---GTCGAAGAGGAAA
CAGATCACCGACGCGCAGAGTGAGCTAAGCTAGTTAATTCGGGTGCTTCCAATTCCATCATGACTTTGAGGGCGGAATAA
TGTTGCCTCCAGTTTAGTCATGCGCCCATACTGGAGTGCCCGGTACTACATATGCACAGCTGTAG---CTGCGAAGTTCT
TAAAGGATTGCTGCCCTCTTTATTATAAGAATAATAAAATGCTATTTTTTTTTTTGCAAAGGTATTCCGTTTTAGCAAAT
TGTGCACAACTCTTTTTTTAGAGTGCGACTCTTTTTTTTCTGACCAACAACTCTTTTTTGTTAGAACAGTGCACAGCTCT
TAAGAATTAAAGGAATGA---TTAATATAGGTTGGCCCTTGAAGATCTTTTTTTTAATCGATGAAGAACTTTCTTTGAGG
ACCTGAAAACTTTCAAGACGCTGAACCGGCCCAAATAAAGCCTGTTGGTTCGCTTCATTAGGCCTGGCCCAATATGCATT
TCTGAAAGTTGGTGACCCATTCCGTGTAGTCTGGAGCATTGGGAGAAAATCCGTGTGG-----------------GTCAC
CGCCTGCGCGTGGATACAAACGTTTCTATG-----AAGAAATAAAAAACGCGTGGATACAAACTCCGGTGCAGCTTACGG
ATCAGCAAA-CGCGCGTTGCTGATTCGAAACTAAGAAACGGAGGAGACAACCGCACATCGCTCGACCTTATAATTCATGG
CCG-------GTCATTCTATTTGCAGCACATCAGTCACAGCTCGCAAGAATTCCAAGTACA----GTATCCAACATGTCC
CGGCCATTCCCTCCATTGTTCGTCCCACTGGTCCTGCTGCTGCTAACATCGACCTCGTCGCCGGCCACCGCCGCGGCAGA
GATCGCGGAGGCGCCGTCCGCCGTTGGCTGCAGCGGCAGCGCGGAGGCAGCGTCGCGGGTGGTGGCGGAGAGCTGCACGG
ACGACATCGTCAGGTCCTTCTTCGGCGTGCGCGGCAGCGACGCCTGCTGCCGCGCGCTGGAGACGGCCGGCGCCGGGTGC
TACCGCGCGGTGTTCTCCGGCTCCCCGTTCGCCGATATCTACCCGACCATCCTCGGTAACGTCTGCGGCCTCGCCGTGGC
TCCCAGCCCCGGGGAACGATCGTACTACTAGTCT-----CCAGTTGTAACCGAAGTTGACGAAA-CGAGATTTTATTTTA
AGATCGTCTGAAATAAAATCGGCTACGTG--GTACATAGTTCAGTTCAGTTCCTAAAAAACGGGTTAATAATATGATCAA
ATTCGGCGCACATGTTTATCTAAGCCATGTACGCAGCACAAAGTTCAATTCAGTTCCTTAAAAAAATTCAATCGGAGTAC
GTATGTAATAAGTAA-----GGCGTATAAAATAGACATCTCCTCCATCGCACGAGTCGCGGTCGCTGACTCACCGCAATC
GTACTTTTC-CTACGTGAAAATGACAGCGTTATCGTCACGGAGAAAAAGAACGGGAAGACGCAGCGCCAGCACAAAAGCG
TGGCAAAGACACATCCACTTCGGATCGGCCACTGTCTAATGTCTGCTCCTTCTCTCGCCACAGCCTGCTCTTAAAGGGAA
GGGCGTAGTTTCCATCGACAAAAAGGAAAGGAAAAGAAGAAGAAGAAA------TCCTAGCTGAGGCTGAAGGTGAAATA
TAGGACTATAGGAATATGATCTAAATCCTTAGTTACTGCTATGAAACTGACCGGTGGATAATGGATCGAGGAATATAAAG
AGAAGGGGCGAAAAGCAGTATCCCTGAATCCTAAGCTGTCGGTACATGGTCGAATTCAGTATTTCTCTTTTCCCGAATTT
TTTGGATAATGCTGACTTTGCCGGAACT-TTACCTAATCCGAACGCGATTGATGTTACTTCCTCCAGTGGAGCAAGTGGT
AACTCAG--------------------------------------------------CGGGGAAAATCGAGTCTCCCCTT
AGA-----------TTCAAAGATCTACTCGTGACAGTCTATTTTTCAATCTTTTCCT------------CTCTCTTTTCT
GATTCCGACTGTGGAGATCAATCGATCAATCTAAAACGCTCGGCTCCGGTTTGCCCTTCCTTTCCACTCATGTCTACTCT
AGGCCATGAGCAATTGAGCATTT-------------------ATCGGAGTAGGTTCCATTACCAAAACATTTTCAAACGG
ATTTTTTGCTTCTTTTGTTTTGGTTTGGCACGCTCGACAGAAAATAAAAGACCATCGTGAAT----
>SNPs
-------------------SSSSSS-------------------S---SSSS--------------S-------------
-----------------------------------------------S-----------S----------------SSSS
SSSSSSSSSSSSSS--------S------------------------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------
-----------------------S--S-------------------------------------SSS---S---------
-----------------------------------------------------------------------S--------
--------------------------------------------S---------S--------------------S----
-S--------S------------------S--S--S-S------------------------------------S-----
-----------S--------------------------------------------------------------------
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-S-------------------------------------------------------------SS---------------
---S-------SS-----S----------------------------------------S----S---------------
------------S------------SS--SSSSSS---------------------------------------------
---------S----------------------------------------------------------------------
-----SSSSS----------------------------------------------------------------------
------------------------S----------------------S--------------------------------
------------------------------------------------S-------------------------------
-----------------------------------------S--------------------------------------
----------S---------------------------------------------------------------------
---------------S---------------S--SS-SS--S-----------------------------S-S------
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--------------------------------------------S------S-------S-----------------S--
-----S--------------------------S-------------------------------------------SS--
---------S-----------------S-------------------------------------------S--------
---------------------S----------S-----------------------------------------------
-----S-----S------------S-----------------------SSSSSS--------------------------
--S--SSSSSS--------------------------------------------------------S--------S---
-S-S---------------S--------------------------------------------------------S---
------S----------------------------S--------------------------------------------
-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----------S---
---SSSSSSSSSSS----S------S--------S--------------SS-S-SSSSSSSSSSSSSSS-----------
-------S-S-----S--S---SSS--S-------S-S----------S---------S----S--S-------------
------------S-SSSSS--SSSSSSSSSSSSSSSSSSSSS-------------------------------------S
S------S-----------S------S-------S--------S--SS--------------SSSS
>forward_165
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-----------------------------------------------------------------CGTGTGTGTGTGTGT
GTGTG---------------------------------------------------------------------------
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>reverse_1793
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--------------------------------GGACATCTCCTCCATCGCAC----------------------------
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