>input_sequence_80736
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-------------------------------------------------------ATGTCGTCGTGGGCGCAGCACTCGC
GGCGGGGCTGGAGGCACGGCTGGGCGGCG------------------ACGCTGCCGCCGTGGCGCCTGCTGGCCTTCTTC
GCCATCGTGGTCTCCTTCCTGGCCACCTCCTCCTACGTCGACTACCGGGCCGTGGAGCGCCGTGCCGAGATCGGGGCACG
CGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGCCGCCGTACCCGCT
GGGCGCTCCGACGCCACGCCATTAACGCCCAGCCGGCCGTGGCACCGTCGCAGTCGTCGGGGGCGTCTCCGTGGGGCGTG
GCGGCGATGGTGGCGGTGCTGCTGGTGATGGTGACGTTCCAGCCCTCCGTGCACTCCATGTGGTTCAGGCCGCTCTGGAG
TTCAGACTACAGCTAG----------------------------------------------------------------
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>chr4A_1_TraesCS4A01G317700
AGGCAGTGTAAACTTATCGTAAAAGACAATGATGATAGAAAAAAGATCAAATCTAAAAAAGATTTCAGAACGAAATCAAA
TCATGCTAAAGTTTGATAAAAAGAATTTGGCCACCACCATGGTGAAGATCTACACCCCTCTTACATGTGCCATGGTTCTA
TAGGTACGGGATTCATGTTGATTATGGTTGGGGACTGAAAATAAAAACCACCCCCCATGGCGCCTGCGGATTCTCAATGC
TAAGCTTTTCTTCAAGAAGAAAACTAGGAAAGGCCCATTAGTCGGCCTGAAAAGGTAGTATACATATATTTCTTGCGAGT
TAAGAAAGAAAACAGTTTTGCTAAAGCACATCTAGATGCGCCATAAGTATTGCATATCTAAGTCGTAAGTCATTGATCTT
ACGCGAAGATTCGTGTGAGTATTTTCTTTTTTTTTCACTTCTTATGTTTGATTGAGGCATTTAAATGTGCAACAACTAGG
GCATATCTAGACAAACCTAAAAGAAAATTAATTATTCCCACTTCAAAATGTGCAACTATACCCATGACACGACCGGTTGG
ATAAACTAAACGCTTGATCAGGAGTGCGTTGGACTTAGAAATAATAATTTCCAAATCCACCCAACAAATGATTCAGAAGC
TTTTTTTTTGGCGAAT----AAAAATGATTCAGA----AGCTAGCTCTATAGTTGTGAGGTGGAAGGAATTTTTCCATCT
TTAATCAGTGCGCAGCGCACCACCTATGATCAATTGATTCTCTCATGTAATCCTCCTTTGATGTATAGCTAAGCTAGCTC
TTCCAGCAGGCAGCATATATTCCGGAGCGCCCACCTCTGAGCTCTGACCCATCACCGCTCCTCTCCCGCCTTTCCTTTCT
TCCACCCA------CAAGCATTTGGCATCTGCTTCCTTCCTTCCACTCCAATAATATATACCACCACCCTGCACGCGCCT
ACACCTCGGTAACGCAGGAGCGGCAGCAGGCAGCAGCC-AATCTAAGCTAGCGCGATGTCGTCGTGGGCGCAGCACTCGC
GGCGGGGCTGGAGGCACGGCTGGGCGGCG------------------ACGCTGCCGCCGTGGCGCCTGCTGGCCTTCTTC
GCCATCGTGGTCTCCTTCCTGGCCACCTCCTCCTACGTCGACTACCGGGCCGTGGAGCGCCGTGCCGAGATCGGGGCACG
CGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGCCGCCGTACCCGCT
GGGCGCTCCGACGCCACGCCATTAACGCCCAGCCGGCCGTGGCACCGTCGCAGTCGTCGGGGGCGTCTCCGTGGGGCGTG
GCGGCGATGGTGGCGGTGCTGCTGGTGATGGTGACGTTCCAGCCCTCCGTGCACTCCATGTGGTTCAGGCCGCTCTGGAG
TTCAGACTACAGCTAGCCCCTAGCTCATCAGATGCTCCCCGTGTGTACTACCTT--------------TTTTTTTGCGAA
ATCTCCGTG-TGTAGTACTGTCAGTGTGCATAAAAGTAGTACTTTCTAGGTAGAGATCAACTACTACGTGCTTGAGATAT
ATCGATTTTGCTTGGCATATTTGTGTTTTATCGATGTGTAACCTCACGGTATTACTCGCATTTTGTACGCGTCTGTATGT
TTGTATTCTCATTTTGTTAAAATTTTGCGCCTAGGTTCGGTTTCGCATCGGCGATGGCAA--------------AGCATC
GTGTTCGGAGACACAATTTGGAGGTCATATGTTGCGTTCCTTCCGTGCTTGTTGCTGTCAGGTGGATTTTCAAGGGCGCT
ATGTACACCACCACTGCTGCGTCCAAGACGCTGCCTTTCTCGTGACCGTCCAAGCCCTGCCACCTACTCGCAAATCTCTG
GTAGGCATT--CATGGATGGATGATGCGTCGGCAAAGGTAGTCCAAATTGGTTTGTTGTCTTCGGAGACGGCAAGTGTTG
GTCGAGACGCGGCTTTGTATTTCAGTTTAGGATAGACCCCTTATGTTGTGGTTGTAGTGGGTGTGGTAGCTTGTAATTGG
ACTGCCCTGGTGTGTGTTGGCTTATCTTCAAACTTGCCTCGTTGTCTAGTAAAATGTGCACTGCACTTGTTCGCAACAAG
GGTAGTCTTGTAACTTATTTCTACATTC-------TACAAAAATATGGTTCTTCTTGGCGTACTTTTAAAGAAAGAATTT
CACCTAAACTAGCACTAAGTCTGTTTTAAGAATAACTAACACTCACAAATGATATGTAACACACAATGGATCCTATATGG
CGCGTAGGGCGCCCCAAGCATTGTGGCACATACCCCCAAGCTCACCCACGCTCATTCTGGGCCGGCCCAAGTGGGGCGCG
AGGTCCCCCCTTTTTTCTACTTCTTTCGTTTTTTTCTTTTCTCCTTTCCTTTTATTTTTTGTTTTCCTTTTTCTTTCCTA
CTTTTCCTATATTT
>chr5D_606
AATTCCCATAATCCA-----------------------------------------------------------------
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----------------------------------------------------------ACCCAACAAATGATTCGGAAGC
TTTTTTTTGGGGGGGGCGGGAAAAATGATTCAGA----AGCTAGCTCTATAGTGGTGAGGTGGAAGGAATTTCTCCATCT
TTAATAAGTGCGCACCACCTCTGATA-GACCAATTGATTCTCTCATGTAACCCTCCTTTGATGTATAGCTAAGCTAGCTC
TTCCAACAGGCAGCATATATTCCGGCGCGCCCACCTCTGAGCTCTGA-CCATCACCGCTCCTCTCCCGCCTCTCCTTTCT
TCCACCCACAATTGCAAGCATTTGGCATCTGCTTCCTTCCTTCCACTCCAATAATATATACCACCACCCTGCAGGCGCCT
ACAGCTGAGCTCGACAAAGCCGGAGC--GGCAGCAGCC-AAGCTAAGCTAGCGCGATGTCGTCGTGGGCGCAGCACTCGC
GGCGGGGCTGGAGGCACGGCTGGGCGGCGCGGGCGCTGTCGTCGGCGACGCTGCCGCCGTGGCGCCTGCTGGCCTTCTTC
GCCATCGTGGTCTCCTTCCTGGCAACCTCCTCCTACGTCGACTACCGGGCTGTCGAGCGCCGGGCCGAGATCGGCGCGCG
GGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGTCGCCGCACCCGCT
GGGCGCTCCGCCGCCACGCCGTGAACGCCCAGCCTGCCTTGGCCTCGTCGCAGTCATCGGGGGCCTCGCCGTGGGGCGTG
GCGGCGATGGTGGCGGTGCTGCTGGTCATGGTGACTTTCCAGCCCGCCGTCCACTCCATGTGGTTCAGGCCGCTCTGGAG
TTCAGACTACAGCTAGCTCCTAGCTCATCGGATGCTCTCCGTGTGTAGTACCTCTTCTTTTTCTTTTCTTTTTTTGCAAA
ATCTCCGTA-TGTGGTACTATCAGTGTGCATAAA---AGTACTTTCTAGCTAGAGATCAATTACTACGTGCTTGAGATAT
ATCGGTTTTGCTTGGGATATTTGTGTTTGATCGATGTGTAACCTCACGGTATTACTCGCATTTCATACGCGTCTGTATGT
TTGTATTCTCATTTTGTTAAAATTTTGCGACTAGGTTCGGTTCCGGGCGCTCTCGGCGTCGTTCCTCTGTTGGGAGCATC
GTGTACTGAGACACGATCTGAAGGTCATGTGTTGCGTTCGTTTCGTGCTTGTTGCTGTCAGGTCAATCTTCAAGGGCGCT
ATGTACGGCATAGTTGGCGTGTCCAAGACGATGCCTTTCTCGTGACCGTCCAAGTCCCGCCACCGACTCGCCAATCTCTT
TTAGGCATT--CATGGGTGGATGGTGCGTCGGCAAGGGTAGTCCAAGTGGGTGTGTTATCTTCGAAGGCGGCAAGTGTTG
GTCGAGACACGGCTTTATATTTCAGTTTAGGATAGGCCCCTTGTGTTGTGGTTGTAGT-GGTGTGGTAGCTTGTCATCGG
ACTGCCCTGGTGTGTGTTGGCTTGTCTTCGAACTTGCCTCGGTGT-----------------------------------
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>chr5B_611
-----CCATAATCCA-----------------------------------------------------------------
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----------------------------------------------------------ACCCAACAAATTATTCGGAAGC
TTTTGTTT------GGCCAGAAAAATGATTTAGAGGCTAGCTAGCTCTATAGTGGCGAGGTGGAAGGAATTTCTCCATCT
TTAATCAGT-----GCGCACCACCTATGACCAATTGATTCTCTCATCTAATCCTCCTTTGATTTATAGCTAAGCTAGCTC
TTTCAACAGGCAGCATATATTCCGGCGCGCCCACCTCTGAGCTCTGACCCATCACGGCTCCTCTCCCGCCTTTCCTTTCT
TCCACCCA------CAAGCATTTGGCATCTGCTTCCTTCCTTCCACTCCAATAATATATACCACCACTCTGCACGCGCCT
ACAGCTCAGCTGGATAGAGCCGGTGC--GGCAGCAGCTTAAGCTAAGCTTGCGCGATGTCGTCGTGGGCGCAGCACTCGC
GGCGGGGCTGGAGGCACGGCTGGGCGGCGCGGGCGCTGTCATCGGCGACGCTGCCGCCGTGGCGCCTGCTGGCCTTCTTC
GCCATCGTGGTCTCCTTCCTGGCCACCTCCTCCTACGTCGACTACCGGGCCGTCGAGCGCGCCGCCGAGATCGGCGCGCG
GGTCTTCGCCGCGCCGCTCGCCGCCATGGCCGCCTTCCTCCTCTTCGCCGCGCTCGGGTACTGGCGCCGCCGCACCCGCT
GGGCGCTCCGACGCCACGCCGTGAACGCCCAGCCGGCCGCGGCCTCGTCGCAGTCGTCGGGGGCGTCACCGTGGGGCGTG
GCGGCGATGGTGGCGGTGCTGCTGGTGATGGTGACTTTCCAGCCCTGCGTCCACTCCATGTGGTTCAGGCCGCTCTGGAG
TTCAGACTACAGCTAGCTCCTAGCTCATCGGATGCTCTCCGTGTGTAGTACCTCTTCT-----TTTTCTTTTTTTGCAAA
ATCTCCGGGTTGTGGTACTATCAGTGTGCATAAA---AGTACTTTCTAGCTAGAGATCAATTACTACGTGCTTGAGATAT
ACCGGTTTTGCTTGGGATATTTGTGTTTGATCGATGTGTAACCTCACGGTATTACTCGCATTTCATATGTGTCTGTATGT
TTGTATTCTCATTTTGTTAAAATTTTGCGACTAGGTTCGGTTCCGGCCGCTCTCAGCATCGTTACTCTGTTGAGAGCATC
GTGTACGGAGACACGATCCAGAGGTCATGTGTTGCGTTCCTTTCGTGCTTGTTGCTGTCAAGTCGATCTTCAAGGGCGTT
ATGTACGGCATAATTGGCGTGTCCAAGACGATGCCTTTCTCGTGACCGTCCAAGTCCCGCCACCGACTCGCCAATCTCTT
TTAGGCATTTTCATGGGTGGATGGTGCATCGGCAAGTGTAGTCCAAGTGGGTGTGTTATCTTCGAAGGCGGCAAGTGTTG
GTCGAGACACGGCTTTGTAATTCAGTTTAGGATTGGCCCCTTGTGTTATGGTTGTAGT-GGTGTGGTAGCTTGTCATCGG
ACTGCCCTGGTGTGTGTTGGCTTGTCTTCGAACTTGCCTCGGTGTGGAGTGGAGTGTCCACTGTAC----TCGCAACAAG
GATAGTCTTCTTATAATTTATTTATTTCTGGCATTTATTAAAATATGATACGTTTGGGTGTACTCTTCAAAAAATC----
CACCTAAACTCGCACTAATTATTTTTTAAGAATAACTAGCACTCACAAATGATATGTAAC--------------------
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>SNPs
-SSSSSSS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----
--------S--S-SSS-------------------------------------S------------------S-------
-----------------------------S--------------------------------------------------
-----S-------------------S------------------------------------------------------
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---S---S-SSSSS---SSS---SSSSS-------------S--------------------------------------
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-----------------------------------------------------S--------S-----------S--S--
S-----------------------------------------------------------------------S-------
--------------------S-S--------------------SS----------------------S------------
-----------------------------------S--------------S-----------------------------
-----------------S-----------S-------S---------S-----S-----------------------S--
-------------S-----S--------------SSS------------S----------S-------------------
----S----------S------------S----------------------------------SS---------------
-----------------------------S------------S--SSSSSS-SSS-SSSS--------------------
----S---------S--S----------S-------------S--------------------S---S------------
------SS--SS-S--SS-S----------S-----------------------S--S------S------S-------S
S---------------S------S-----------S----------S-S---S----S------S--S------------
--------S--------------------------S------S---------------S---------------S--S--
-----------------------S-----S-----------S---SS---SS-S---S-----S--SSSS----------
-S-------S-S-SSSS--SS-SSS------------SS--------S-S-S-S-S--S-----S--S--S---SSSSSS
----------S-------S-S-S---------------S---------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS
>forward_594
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--------------TGATCAGGAGTGCGTTGGAC----------------------------------------------
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>reverse_1734
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-----------------------------------------------------ATGGCAAAGCATCGTGTTCG-------
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