>input_sequence_80731
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-------------------------------------------------------------------------------A
TGCGTGCTCCAATTGTTTCCACCAACTCATATGCCTTCGAGATGGATGATACACTCGGCATATATAACCGTAACTA----
--TGCCAAAACAACTATTGATATATGGGTATTGCAGAACTACGAAAGCGAGGTTTGGGACTTCAAGTATCGAATCAAATT
GTCAGTTGCAGAAATACGGGGGAAGTTTGAGGCCTT---------------------TAATGAC------CATTGGAATG
TGGAGGTTGTTTCAGCAGACCATGACGTGCTCTTGCTAGTCAGTTCTGGTCGGTGTCTGTCTTACGTTGACAATGATGGT
AAGCTGATTGACAGTTTTGATCATGGTCGCAAATACTTCTTTTTGTCTAAATATCGGCTCAAGCAAAGTCTTGTCCAGCA
TACCTTCTTTCAGGCATTAGAAAGTTCTGTTGTGAACACTTCACCATTCATCTGA-------------------------
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>chr3A_1_TraesCS3A01G466800
ATGGAAACGTCAAATAGGGCATAAAATTTTGAGATTGTCTTAAATAGCAAAGAAAAATTTGTTTAGGGGGCCAATAAGGA
AATATATTTTTCAGAAGGGCCAAATAAAGAATTCTCTCATCTCCTGCAGAGTTAGACCTTGCAAAAG-AACCATCTTAGT
CAATTTCTCCCCTTTCTATCGTCTCCTCCGCT-CCCTTTGCCGCCGCCGCCAACACAAATCTACAATTT-ATCTTGTTCC
TGGAAGGGAGCAACAACCAAGATGCCGACAACCATGGCCAAGGCCGCAAGGGCAGGAGCGGCGCCTCTTCGCCACGACAG
CAGCCTTCCGGAGGAGATCGTCGTCTGGGAGATCCTAGTTCGCCTCGACCCCAAATCTCTCCTCCGTTGCCGCGCCGTCC
GTCGGACGTGGCGCCATGCCACCTCCCCCCGCGCCTTCCTGCTTGCCCACCATGCCCACCAGCCAGCCCA-CCCATCGCG
TTAGACGAAGAATACATCCTCACTGTCGACCGCCTTGCCGCCACCCAGCTCCACACTGTCGCCCATCTTGACAAGGCCTT
CAATCCAGAGGCTTCCTGCGATGGCCTTCTTGTTGTCTCCAGGT---ACAACATGACTGACACCATTGAT---TTCTCAA
TTTGTAACATGGCCACTCGTCAATTTGCTCCCCTTCAGCAACTACATGAATTGGGCTTGCGGTTATTGGGGGTGTACTCG
CATCAACCTACCGGCGAGTATCGATTGTTACTTGAACTC--------------GATAGCTACAATTAAACGCCTGAAGAC
CAACTTGGCTACTATGTCTTTGCATTGGGCTCTCACCAGTCACCAAGGTACATCGGGTGGCAGGAGTCAACATCACAGTG
CTTCAGTTTACCTGTCTTGGTATGCGATAGTCTGCATTGGTAGTTTGGTACCCAG------TATATTATGTGAGTGAAAG
CAGCTACGTACGGCTTC------AGAGTGAAAGCAAAGTG---ATAGTATTCGACACCATAGCTGAGTCGTTCTGGCCAA
TGCGTGCTCCAATTGTTTCCACCAACTCATATGCCTTCGAGATGGATGATACACTCGGCATATATAACCGTAACTA----
--TGCCAAAACAACTATTGATATATGGGTATTGCAGAACTACGAAAGCGAGGTTTGGGACTTCAAGTATCGAATCAAATT
GTCAGTTGCAGAAATACGGGGGAAGTTTGAGGCCTT---------------------TAATGAC------CATTGGAATG
TGGAGGTTGTTTCAGCAGACCATGACGTGCTCTTGCTAGTCAGTTCTGGTCGGTGTCTGTCTTACGTTGACAATGATGGT
AAGCTGATTGACAGTTTTGATCATGGTCGCAAATACTTCTTTTTGTCTAAATATCGGCTCAAGCAAAGTCTTGTCCAGCA
TACCTTCTTTCAGGCATTAGAAAGTTCTGTTGTGAACACTTCACCATTCATCTGATGTCTA------CTGAGCGAGGTGG
TGCTTCTTA--GCAGCT----------------------TAAC--TGTTGTATCCTTATGAGCTGCAACATC--TATGAA
TT--------GGATCAAGTATGAGCCTGCTGGCATC--TTCTTCATTTT-GCATTGATGT-A--TATAAATTATGATTAG
AAGCTCTATCTTTTGTGTGTTT--------ATCTATGCTTTTCTTGGCACCCTGGAGGGCTGAAATGACTATTCTGTA--
TGTTGATGCTATAATTT------------------CTTAGTAATTTTGCTCTGCTTTGTACATAATTGCCAACTGATCCG
CCTCATGTGTCTATTTTCTT-GGGCTGATAGTTTGACTCTGCTTTATTTTAATTATCTTGTGATTTTCTTAGTATTCAAT
TGTTAGCAATTTTTATGGCTCATGTCCCTCTTCCTTGAGTCAAAGAGTTGACTTTACCTTCTTATCTAGTGGTTTTCTTG
ATAGTCTATATTGAGTGTGTTTCCGGTTTGTACCCTCTGTTGTCGCTCATGATGAAATGAGAAAAGATTTTTCTGTTTCT
TGATGTGCAAGTTGCATCTAATTTTTAGAGCAGCTTGAGCACTACACATTAAAGTAAATGGTTGCATAAGAGTAGTTGAC
ACCATTTATTTATGACTAACTACC-AACCAAACCTCTGTTCACTATGACTCATTTCCCATTCCTTTCACTGAATTTTGTG
GAAGTCATAGTTAAT----ATCTACTCGACAGTGCAACC-----GTAGTATCTTAGGTTTTGGCACCGAAAATATAGAAC
ATAGTTGTTTTAAATTATTGGGCCAACAATGTATGCGGTGAATGCCGAGACAAAGCCCTTGCAGATTTTATTCAGTCGCC
CACATTCTTTATTAAGTTGGTAAATGTCTCACAAAATATAACCCACTCACTAGAACATTTCGGGTTGCAAGCAGCACGAA
TAGGAAAAGGGTTGGTGTGCTAGCGGCTAGGTTAGAAAGACCT------------GCGTCTGTTCCAGCGTCTTGCAACA
TTAACTTGTGATGATAGTTTGCATCTGTTCCAGC
>chr3A_1
ATGGAAACGTCAAATAGGGCATAAAAAATTGAGATTGTCTTAAATAGCAAAGAAAATATTGTTTAGGGTCCCACTAAGGA
AATATATTTTTCAGAAGGGCCAAAGAAGGAATTCTCTCATCTCCTGCAGAGTTAGACCTTGCAAAAG-AACCATCTTAGT
CAATTTCTCCCCTTTCTATCGTCTCCTCCGCTCCCCTTCGCCGCCGCCGCCAACATAAATCTACAATTT-ATCTTGTTCC
TGCAAGGGAGCAACAACCAAGATGCCGACGACCATGGCCAAGGCCGCAAGGGCAGGAGCGGCGCCTCTTCGCCATGACGG
CAGCCTTCCGGAGGAGATTGTCGTCTGGGAGATCCTAGTTCGCCTCGACCCCAAATCCCTCCTCCGTTGCCGCACCGTCC
GTCGGACATGGCGCCATGCCACCTCCACCCGTGCCTTCCTGCTTGCCCACCATGCCCACCAGCCAGCCCTCCCCATCGCG
TTAGACGAAGAATACATCCTCACCGTTGACCGCCTTGCCGCCGCCCAGCTCCACACTGTCGCCCATCTTGACAAGGCCTT
CAATCCAGAGGCTTCCTGCGATGGCCTTCTCATCCTCTCCAGGTGCAACAACATGACCGACACCATTGAT---TTCTCAG
TTTGTAACCTAGCCACTCGTCAATTTGCTCCCCTTCAACAACTACATGAACTGGGCTTGCGGTTATTGGGGATGTACTCG
CATGAACCTACTGGCGAGTATCGATTGCTACTTGAACGC--------------CATAGCTACAATGAAACGCCTGAAGAC
CAACTTGGCTACTATGTCTTTGCGTTGGGCTCTCACCAGTCGCCGAGGTACATCGGGTGGCAGGAGTCAACATCACAATG
CTT-----TACCTCTCTTGGTATGCGATAGCCTGCATT--------GGTACCCAG------TCTATTATGTGAGTGAAAG
CAGCTACGTACGGCTTC------AGAGTGAAAGCAAAGTGATAATAGTATTCGACCCCATAGCTGATTCATTCTGGCCAA
TGCGTGCTCCAATTGTTTCCACCAACTCATATGCCTTTGAGATGGATGGTACACTCGGCATATATAGCCATAACTA----
--TGCCAAAACAACTATTGATATATGGGTATTGCAGAACTACAAAAGCGAGGTTTGGGACTTCAAGTATCGAATCAAATT
GCCGGTTGCAGAAATACGGGGGAAGTTTGAGGCCTT---------------------TGATGAC------CATTGGAATG
TGGAGGTTGTTTCAGCGGACGGTGACGTGCTCTTGCTAGTCAGTTCTGATCGGTGTCTATCTTACGTTGACAATGATGGT
AAGCTGATTGACAGTTTTGATCATGGTCGCAAATACTTCTTTTTGTCTAAATATCGGCTTTAGCAAAGTCTTGTCCAGCA
TACCTTCTTTCAGGCTTTAGAAAGTTCTGTTGTGAACACTTCACCATTCATCTGATGTCTA------TTGAGTGAGGTGG
TGCTTCTTA--GCAGCT----------------------TAAC--TGTTGTATCCTTATGAGCTGCAACATC--TATGAA
TT--------GGATCAAGTATGAGCCTGATGGCATC--TTCTTCATTTT-GCATTGATGT-A--TATAAATTGTGATCAG
AAGCTCTATCTTTTGTGTGTTT--------ATCTATGCTTTTCTTGGCACCCTGGAGGGTTGAAATGACTATTCTGTA--
TGTTGATGCTATAATTT------------------CTTAGTAATTTTGCTCTG-TTTGTACATAATTGCCAACTGATCCG
CCTCATGTGTCTATTTTCTT--GGCTGATGGTTTGACTCTGCTTTATTTTAATTATCTTGTGATTTTCTTAGTATTCAAT
TGTTAGAAATTTTTATGGCTCATGTTCCTCTTCCTTGAGTCAAAGAGTTGACTTTACGTTCTTATGTAGTGGTTTTCTTG
ATAGTCTATATTGAGTGTGTTTCCGGTTTGTACCATCTGTTGTCGCTCATGATGAAATG-----AGATTTTTCTGTTTCT
TGATGTGCAAGTTGCATCTAATTTTTAGAGCAGCTTGAGCACTACACATTAAAATAAATGGTTGCATAAGAGTAGTTGAC
ACCATTTATCTATGGCGAACTAGCAAACCAAACCTCTGTTCACTATGACTCATTTTCCATTAATTTCACTGAATTTTGTG
GAAGTCATAGCTAAT----ATCTACTCGACAGTGCAAATATTCCGCAATATCTTAGGTTTTGGCACCGAAAATATAGAAC
ATAGTTATTCTAAATTATTGGGCCAACAATGTATACGATGAATGCCGAGACAAAGCCCTTGCAGATTTTATTCAGTCGCC
CACATTCTTTATTAAGTTGGTAAATGTCTCACAAAATATAACCCACTCACTAGAACATTTCCGGTTGCAAGCAGCACGAA
AAGGAAAAGGGTTGGTGTGCTAGCGGCTAGGTTAGAAAGACCT------------GCGTCTGTTCCAGCGTCTTGCAACA
TTAACTTGTGATGATAGTTTGCATCTGTTCCAGC
>chr3D_1
ATGGAAACGTCAAATAGGGCATAAAATTTTGAGATTGTCTTGAATAGCAAAGAAAATTTTGTTTAGGG-GCCAATAAGGA
AATATATTTTTCAGAAGGGCGAAATAAGGAATTCTCTCATCTCCTGCAGAGTTAGACCTTGCAAAAG-AACCATCTTAGT
CAATTTCTCCCCTTTCTATCGTCTCCTCCGCTCCCCTTCGCCGCCGCCGCCAACACAAATCTACAATTTTATCTTGTTCC
TGGAAGGGAGCAACAACCAAGATGCCGACGACCATGGCCAAGGCCGCAAGGGCAGGAGCGGCGCCTCTTCGCCACGACGG
CAGCCTTCCGGAGGAGATCGTCGTCTGGGAGATCCTAGTTCGCCTCGACCCCAAATCCCTCCTCCGTTGCCGCGTCGTCC
GTCT------GCGCCATGCCACCTCCACCCGTGCCTTCCTGCTTGCCCACCATGCCCACCAGCCAGCCCTCCCCATTGCG
TTAGACGAAGAATACATCCTCACCGCCGACCGCCTTGCCGCTGCCAAGCTCCACACTGTCGCCCATCTTGACAAGGCCTT
CAATCCAGAGGCTTCCTGCGATGGCCTTCTCGTCCTCTCCAGGTACAACAACATGACTGACACCATTGAT---TTCTCAG
TTTGTAACCTGGCCACTCGTCAATTTGCTCCCCTTCAACAACTACATGAACTGGGCTTGCGGTTATTGGGGATGTACTCG
CATCAACCTACTGGCGAGTATCGATTGTTACTTGAACGC--------------GATAGCTACAATGAAACGCCTGAAGAC
CAACTTGGCTACTATGTCTTTGCATTGGGCTCTCACCAGTCGCCAAGGTACATCGGGTGGCAGGAGTCAACATCACAATG
CTTCAGTTTACCTGTCTTGGTATGCGATAGCCTGCATT--------GGTACCCAG------TCTATTATGTGAGTGAAAG
CAGCTACGTACGGCTTC------AGAGTGAAAGCAAAGCGATAATAGTATTCGACACCATAGCTGAGTCGTTCCGGCCAA
TGCATGCTCCAATTGTTTCCAGCAACTCATATGCCTTTGAGATGGATGGTACACTCGGCATATATAGCCGTAACTA----
--TGCCAAAACAACTATTGATATATGGGTATTGCAAAACTACGAAAGCGAGGTTTGGGACTTCAAGTATCGAATCAAATT
GCCAGTTGCAGAAATACGGGGGAAGTTTGAGGCCTT---------------------TGATGAC------CATTGGAATG
TGGAGGTTGTTTCAGCGGACGGTGATGTGCTCTTGCTAGTCAATTCTGGTCGGTGTCTGTCTTATGTCGACAATGATGGT
AAGCTGATTGACAGTTTTGATCATGGTCGCAAATACTTCTTTTTGTCTAAATATCGGCTCAAGCAAAGTCTTGTCCAGCA
TACCTTCTTTCAAGCTTTAGAAAGTTCTGCTGTGAACACTTCACCATTCATCTGATGTCTA------TTGAGTGAGGTGG
TGCTTCTTA--GCAGCT----------------------T----------------TATGAGCTGCAACATC--TATGAA
TT--------GGATCATGTATGAGCCTGCTGGCATC--TTCTTCATTTT-GCATTGATGT-A--TATAAATTATGATCAG
AAGCTCTATCTTTTGTGTGTTT--------ATCTATGCTTTTCTTGGCACCCTGGAGGGCTGAAATGACTATTTTGTA--
TGTTGATGCTATAATTT------------------CTTAGTAATTTTGCTCTGCTTTGTACATAATTGCCAACTGATCCG
CCTCATGTGTCTATTTTCTT-GGGCTGATGGTTTGACTCTGCTTTATTTTAATTATCTTGTGATTTTCTTAGTATTCAAT
TGTTAGAAATTTTTATGGCTCATGTCCCTCTTCCTTGAGTCAAAGAGTTGACTTTACCTTCTTATGTAGTGGTTTTCTTG
ATAGTCTACATTGAGTGTGTTTCCGGTTTGTACCCTCTGTTGTCGCTCATGATGAAAAGAGAA-AGATTTTTCTGTTTCT
TGATGTGCAAGTTGCATCTAATTTGTAGAGCAGCTTGAGCACTACACATTAAAATAAATGGTTGCATAAGAGTAGTTGAC
ACCATTTATCTATGGCGAACTAGCAAACCAAACCTTTGTTCACTATGACTCATTTTCCATTCCTTTCACTGAATTTTGTG
GAAGTCATAGTTAAT----ATCTACTCGACAGTGCAAAGATTCCGCAATATCTTAGGTTTTGGCAGCGAAAATATGGAAC
ATGGTTATTTTAAATTATTGGGCCAACAATGTATACGGTGAATGCCAAGGCAAAGCCCCTGCAGATTTTATTCAGTCGCC
CACATTCTCTATTAAGTTGGTAAATGTCACACAAAATATAACCCACTCACTAGAACAATTCCAGTTGCAAGCAGCACGAA
AAGGAAAAGGGTTGGTGTGCTAGCGGCTAGGTTAGAAAGACATGTGCCTGTCCCAGCGTCT------------TGCAACA
TGAACTTGTGATGATAGTTTGCATCTGTTCCAGC
>chr3B_1
ATGGAAACGTCAAATAGGGCATAAAATTTTGAGATTGTCTTAAATAGCAAAGAAAATTTTGTTTAGGGGCCCAATAAGGA
AATATATTTTTCAGAAGGGCCAAATAAGGAATTCTCTCATCTCCTGCAGAGTTAGACCTTGCAAAAG-AACCATCTTAGT
CAATTTCTCCCCTTTCTATCGTCTCCTCAGCTCCCCTTCGCCGCCGCCGCCAACACAAATCTACAATTT-ATCTTGTTCC
TCGAAGGGAGCAACAACCAAGATGCCGGCGACCATGGCCAAGGCCGCAAGGGCTGGAGCGGTGCCTCTTCGCCACGATGG
CAGCCTTCCGGAGGAGATCGTCGTCTGGGAGATCCTAGTTCGCCTCGACCCCAAATCCCTCCTCCGTTGTCGCGCCGTCC
GTCGGACGTGGCACCATGCCACCTCCACCCGTGCCTTCCCGCTTGCCCACCATGCGCACCAGCCAGCCCTCCCCATCGCT
TCAGACGAAGAATACATCCTCACCGTCGACCGCCTTGCCGCCGCCCAGCTCCACACTATCGCCCATCTTGACAAGGCCTT
CAATCCAGAGGCTTCCTGCGATGGCCTTCTCGTCCTCTCCAGGTATAACAACATGACTGACACCATTGAT---TTCTCAG
TTTGTAACTTGGCCACTCGTCAATTTGCTCCCCTTCAACAACTACATGAGTTGGGCTTGCGGTTATTGGGGATGTACTCG
CATCAACCTACTGGCGAGTATCGATTGTTACTTGAACGT--------------GATAGCTACAATGAAACGACTGAAGAC
CAACTTGGCTACTATGTCTTTGCATTGGGCTCTCACCAGTCGCCGAGGTACATCGGGTGGCAGGAGTCAACATCACAATG
CTTCAGTTTACCTGTCTTGGTATGCGATAGCCTGCATT--------GGTACCCAG------TCTATTATGTGAGTGAAAG
CAGCTATGTACGGCTTC------AAAGTGAAAGCAAAGCGATAATAGTATTCGACACCATAGCTGAGTCGTTCCGGCCAA
TGCGTGCTCCAATTGTTTCCACCAACTCATATGCCTTTGAGATGGATGGTACACTCGGCATATATAGCCGTAACTA----
--TGCCAAAACAACTATTGATATATGGGTATTGCAGAACTACAAAAGTGAGGTTTGGAACTTCAAGTATCGAATCAAATT
GCCAGTTGCAGAAATACGGGGGAAGTTTGAGACCTT---------------------TGATGAC------CTTTGGAATG
TGGAGGTTGTTTCAGCGGACGGTGACGTGCTCTTGCTGGTCAGTTCTGGTCGGTGTCTGTCTTACATTGACAATGATGGT
AAGCTGATTGACAGTTTTGATCATGGTCGCAAATACTTCTTTTTGTCTAAATATCGGCTCAAGCAAAGTCTTGTCCAGCA
TACCTTCTTTCAGGCTTTAGAAAGTTCTGTTGTGAACACTTCACCATTCATCTGATGTCTATTGATATTGAGTGAGGTGG
TGCTTCTTA--GCAGCT----------------------TAAC--TGTTGTATCCTTATGAGCTGCAACATC--TATGAA
TT--------GGATCAAGTATGAGCCTGCTGGCATC--TTCTTCATT-T-GCATTGATGT-A--TATAAATTATGATCAG
AAGCTCTATCTTCTGTGTGTTT--------ATCTATGCTTTTCTTGGCACCCTGGATGGCTGAAATGAATATTCTGTA--
TGTTGATGCTATAATTT------------------CTTAGTAATTTTGCTCTGCTTTGTACATAATTGCCAACTGATCCG
CATCATGTGTCTATTTTCTT-GGGCTGATGGTTTGGCTCTGCTTTATTTTAATTATCTTGTGATTTTCTTAGTATTCAAT
TGTTAGAAATTGTTATGGCTAATGTCCCTCTTCCTTGAGTCAAAGAGTTGACTTTACCTTCTTATGTAGTGGTTTTCTTG
ATAGTCTACATTGAGTGTGTTTCCGGTTTGTACCCT-TGTTGTCGCTCATGATGAAAAGAGAA-AGATTTTTCTATTTCT
TGATGTGCAAGTTGCATCTAATTTGTAGAGCAGCTTGAGCACCACACATTAAAATAAATGGTTGCATAAGAGTAGTTGAC
ACCATTTATCTATGGCGAACTAGCAAACCAAACCTTTGTTCAT--------------------------TGAATTTTGTG
GAAGTCATGGTTAAT----ATCTACTCGACAGTGCAAAGATTCCGCAATATCTTAGGGTTTCGCACCGAAAATATAGAAC
ATAGTTATTTTAAATTATTGGACCAACAATGTATACGGTGAATGCCAAGGCAAAGCCCTTGCAGATTTTATTCAGTCGTC
CACATTCTTTATTAAGTTGGTAAATGTCACACAAAATATAACCCACTCACTAGAACAATTCCAGTTGCAAGCAGCACGAA
AAGGAAAAGGGTTGGTGTGCTAGCGGCTAGGTTAGAAAGACCATTGCCTGTCCCAGCATCT------------TGCAACA
TTAACTTGTGATGATAGTTTGCATCTGTTCCAGC
>chrUn_4
---GAAACATCAAATAGGGCATAAAATTTTGAGGTTGTCTTAAATAGCAAAGAAAATTTTGTTTAGGGGCCCAATAAGGA
AATATATTTTTTAGAAGGGCCAAATAGGGAATTCTCTCATCTCCTGCAGAGTTAGACCTTGCAAAAGGAACCATCTTAGT
CAATTTCTCCCCTTTCTATCATCTCCTCCGCTCCCCTTCGCCGCCGCCGCCAACACAAATCTACAATTT-ATCTTGTTCC
TCGAAGGGAGCAACAACCAAGATGCCGGCGACCATGGCCAAGGCCGCAAGGGCTGGAGCGGTGCCTCTTCGCCACGGCGG
CAGCCTTCCGAAGGAGATCCTCGTCTGGGAGATCCTAGTTCGCCTCGACCCCAAATCCCTTCTCCGTTGTCGCGCCGTCC
GTCGGTCGTGGCGCCATACCACCTCCACCCGTGCCTTCCTGCTTGCCCACCATGCGCACCAGCCAGCCCTCCCCATCGCG
TCAGACGAAGAATACATCCTCACC-TCGACCGCCTTGCCGCCGCCCAGCTCCACACTGTCGCCCATCTTGACAAGGCCTT
CAATCCAGAGGCTTCCTGCGATGGCCTTCTCGTCCTCTCCAGGTACAACAACATGACTGACACCATTGAT---TTCTCAG
TTTGTAACCTGGCCACTCGTCAATTTGCTCCCCTTCAACAACTACATGAATTGGGCTTGCGGTTATTGGGGATGTACTCG
CATCAACCTACTGGCGAGTATCGATTGTTACTTGAACGC--------------GATAGCTACAATGAAACGCCTGAAGAC
CAACTTGGCTACTATGTATTTGCATTGGGCTCTCACCAGTCGCCGAGGTACATTGGGTGGCAGGAGTCAACATCACAATG
CTTCAGTTTACCTGTCTTGGTATGCGATAGCCTGCATT--------GGTACCCAG------TCTATTATGTGAGTGAAAG
CAGCTATGTACGGCTTC------AGAGTGAAAGCAAAGCGATAATAGTATTCGACACCATAGCTGAGTCGTTCCGGCCAA
TGCGTGCTCCAATTGTTTCCACCAACTCATATGCCTTTGAGATGGATGGTACACTCGGCATATATAGCCGTAACTA----
--TGCCAAAACAACTATTGATATATGGGTATTGCAGAACTACAAAAGCGAGGTTTGGAACTTCAAGTATCGAATCAAATT
GCCAGTTGCAGAAATATGGGGGAAGTTTGAGACCTT---------------------TGATGAC------CTTTGGAATG
TGGAGGTTGTTTCAGTGGACGGTGACGTGCTCTTGCTAGTCAGTTCTGGTCGGTGTCTGTCTTACGTTGACAATGATGGT
AAGCTGATTGACAGTTTTGATCATGGTCGCAAATACTTCTTTTTGTCTAAATATCGGCTCAAGCAAAGTCTTGTCCAGCA
TACCTTCTTTCAGGCTTTAGAAAGTTCTGTTGTGAACACTTCACCATTCATCTGATGTCTATTGATATTGAGTGAGGTGG
TGCTTCTTA--GCAGCT----------------------TAAC--TGTTGTATCCTTATGAGCTGCAACATC--TATGAA
TT--------GGATCAAGTATGAGCCTGCTGGCATC--TTCTTCATT-TTGCATTGGTGT-A--TATAAATTATGATCAG
AAGCTCTATCTTCTCTGTGTTT--------ATCTATGCTTTTCTTGGCACCCTGGAGGGCTGAAATGAATATTCTGTA--
TGTTGATGCTATAATTT------------------CTTAGTAATTTTGCTCTGCTTTGTACATAATTGCCAACTGATCCG
CATCATGTGTCTATTTTCTT-GGGCTGATGGTTTGGCTCTGCTTTATTTTAATTATCTTGTGATTTTCTTAGTATTCAAT
TGTTAGAAATTGTTATGGCTCATGTCCCTCTTCCTTGAGTCAAAGAGTTGACTTTACCTTCTTATGTAGTGGTTTTTTTG
ATAGTCTATATTGAGTGCGTTTCCGGTTTGTACCCTCTGTTGTCGCTCATGATGAAAAGAGAA-AGATTTTTCTGTTTCT
TGATGTGCAAGTTGCATCTAATTTTTAGAGCAGCTTGAGCACTACACATTAAAATAAATGGTTGCATAAGAGTAGTTGAC
ACCATTTATCTATGGCGAACTAGCAAACCAAACCTTTGTTCACTATGACTCATTTTCCATTCCTTTCACTGAATTTTGTG
GAAGTCATAGTTAATTTATACCTACTCAACAGTGCAAAGATTCTGTAATATCTTAGGTTTTGGCACCTAAAATTTAGAAC
ATAGTTATTTTAAATTATTGGGCCAACAATGTATACGGTGAATGCCGAGACAAAGCCCTTGCAGATTTTATTCAGTCGCC
CACATTCTTTATTAAGTTGGTAAATGTCACGCACAATATGACTCACTCACTAGAACAATTCCAATTGCAAGCAGCACGAA
AAGGACAAGGGTTGGTGTGCTAGCGGCTAGGTTAGAAAGACCT------------GCGTCT------------TGCAACA
TTAACTTGTGATGATAGTTTGCATCTGTTCCAGC
>chr3D_520
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-------------------------------------------CCCAGCTCCACAGCGTCGCCTGGCTTGACGAGGTCTT
CCACCAGGAGGCCTCCTGCGACGGACTCCTCGTAATCTCCAAGTTTA---ACATGACTGCCTCTGGAACCTCCTTCTCGG
TCTGCAACCCGGCCACGCGTGAGCATGCTCTCCTTGGGCAACC------ACGGGGCTTCAAGATTTTGGGGATGTACCCA
CACCGCCCTACCGGTGAGTACCGGCTGTTGCTGAAACGGAGGAGGTTGAATCTCATAGCTAACCACTC------------
--AATTGGCTGCTATGTCTTTGCGTTGGGCTCCAACCAGCCACCTAGGTACATCGGGTGGCTGGAGGCAGCGTCAGGGGT
CTTCAACGCACCTGTACGGGTGCGCGATAGCCTGCACT--------GGTACCCAG------TGCTTTACCCGAGTGAAAA
CAATGCACTAGACTATC------GTACTGAAAGCCAGCTGGTAATAGTATTCGACACCATAGGAGAGTCATTCTGCCAGA
TGCATGCTCCAGTTGTTCCCACCAACTTATATCTCTTTGAGATGAGTGGCACGCTCGGCATCCATAGTCGTGACCA----
--TGCCAACGAAATTATTGATATATAGGTGTTGCAGCACTACGAAAGCGAGGCTTGAGATTTAAAGTACCGAATCAAATT
GTTAGTTGCAGAAATCAGGAAGGAGTTCCAAGGTTG---------------------TGATGAC------TGTTGGGATT
TCGACGTTGTTTCGGTGGATGGTGACGTGCTCTTGCTGCTCGATTTTGCTTCGTGGCTACTTCATGTTGACAGTGATAGC
AAGTTGGTCAACAGTTTCTATCGCGGTTGCCAAGAACTCAGTATGTCTAAATGTCGGCTCAAACAAAGTTTGGTTCAGCA
TACCTTCTTTTCGGCTCTAGAAGGTTATTCTGTGAATGCTTCGCCTTTCATCGGAC--CTA------TCTAGTGAGGTGG
TGCTTCTTA--GTTCTC----------------------TAGC--TGTAATATACTCACGAGCTGCAATATC--TATAAA
TT--------GGATCAAGTATGAGCCTGCTGGCAGC--TTCTTCTTT-TGGCGATGATGT-A--T---------------
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>chr3B_696
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-----------------------------------------------------------------TTGGGGATATACCCA
CACCGACCTACCGGCGAGTACCGCCTGCTACTGCACCAG--------------GCGAGCCGCAAGGACTCGCCGAAAGAT
CAAATTGGCTGCTTTGTCCTTCCGTTGGGACCCGACCAGTCACCGAGGTACATCGGGTGGCCGGAGACGAAGGCAGAGTT
GCTCGACGAACCTGTCCACGTGCGTGATGGTCTGCATT--------GGTACCCAAACCCAGTGTATCATCGGAGGGGAAG
CACA------------C------AGCGTGAAAGCAAACCCATAATAGTATTCGACACCATAGCCGAGTCGTTCCGGCAGA
TGCATTCTCCAATTGTTCCCACCCAGGGATATATCTTTGAGAAGGGTGGCATGCTTGGCATCTATTGCCATGACGA----
--TGATAAGAACACTGTTGGTATATGGGTGTTGCAGAACTACGAAAGCGAGGTTTGGGATTTAAAGTACCAAATCAGACT
GCCAGTTGAAGAAATCAGGGGCCGGGTCAAAGATTATGTAGACTATGACTTTCGGGATATTAAT------CTTTGGGATG
TGAACGATGTTTCGGGGGATGGTGGCATGCTCTTGCTGGTCAATTTTGGTTGGTCGGCGTTTCACATTGACACAGATGGC
AAATTGATTGACAGTTTCAATTTTGATCTCCAACGCCTCTGTGTTTATCATTGTCAGCTCAAGCAAAGTCTTGTTCAGCA
TACCTTTTTTCCGGCTCTAAAAGGTTATGCTGTGAATGCTTCACTTTTCATCTGATCGCTG------TTCAGTGAGGTGG
TGGTTCTTA--ACGGAC----------------------TAGC--TGTCGTTTCCTTATGAGCCGCAATATC--TATGGA
AT---------GATCAACTATGAGCCTGCTGGCATC--TTGTTTTTA-G-GCATTGATGTAA--TATAAGTTAGGATCAT
AAGCTCT-------------------------------------------------------------------------
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>chr3A_768
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-----------------------------------------------------------------------CCTAAAGAA
CAAATTGGCTGCTATGTCCTTACGTTGGGCTCTCACCAGCCGCCGAGGTACATCAGATGTCCGGACACAGCATTGTTGTG
CTTCAAGAACCCCGTCCAGGTACGCGATAGCCTGCACT--------GGTACCCAA------TGTATTATGTGAGTGAAAG
CAGCCCACTCCTAGATTTCGACAAGACTGAAAGCGGACTGCTAATTGTATTCGACACCATAGCTGAGTCCTTTCGCCATA
TGCACGCTCCAATTGTTCCCACCTATTCATATATATTTGAGATGGATGGCACGCTCGGCATCCATAGCCGTAACAG----
--GGACAGAGCGACTATTTATGTATGGGTGTTGCAGAACTACGAAAGCGAGGTTTGGGATTTCAAGTACAAGATTCAATT
GCTGGTCACAGAAATTTGGAGGGAGTTTGAACCATG---------------------TGTTGGCCATTGGTATTGGGATG
TGGACATTGTTTCGGGGGATGGTGACGTGCTCTTGCTTGTCAGATTTGGTTGGCATCTGCTTCATGTTGACAGTGATGGC
AAGTTGATCAACAGTTTCAATCCTTTGTTTGGAGATGTCTATGTGTCTCGGTGTAGGCTCAAGCAAAGTCTTGTTAAGCA
TACCTTTTTTCCGTCTCTAGAAGGTTATGCTGTGAATGCTTTGCCTTTTGTCTGACGGCTG------TTGCTTGAGGTGG
CAATTCTTA--ACGGCCTACCTATTGTTTCCTTATGAAGT----------------TATGAGCTGGAATATC--TTTGAA
TT--------AGATAAACTACGAGGCTGCTGTCCTC--TTCTTTTTT-T-GCATCGACGT-A--CACATTTTATGAT---
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>chr3A_772
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---------------------------------------------------------------------------AAGAT
CAACTTGGCTTCTATGTCTTTGTGTTGGGTTCCAACCAGCAACCCAGGTACATTGGGTGGCCGGAGATGACATCATGGTG
CATCCATGAACCTGTCATGGTGCGTGATTGCCTGCATT--------GGTATCCGG------TTCATTATCTGGGTGAAGG
GCCGTA---------TC------AAAGTGAAAGCAAACCGGTAATAGTATTCGACATCATAGCTAAGTCATTCAGGCAGA
TGTGTGCTCCAATTGTTCCCACCGACTCGAATATCTTTGAGATGGATGGCACACTTGGCATCCATAACCATAACAG----
--TGACACACAAGTTATGGATATATGGGTGCTGCAGAACTATGAAAGGGAGATTTGGGACTTCAAGTACCATATCAAATT
GCTGATCGTAGAAATTTGC---GAGTTTAAAGGCGG---------------------TGATGAA------CCCTGGGATG
TGGACGTTTTTTCGAGGGATGGTGAACTGCTCTTGCTGATCGGTTTTGGTTGGTGTCCGCTTCACATTGACAGTGATGGC
AAATTGATTGACTGCTCCTTTCATGATTATGAAACCATATGCATGTCCAAATGTCAGCTCAAGCAAAGTCTTGTTCAGCA
CACCTTTTTTCCGGCACTAGAAGGCTATGCTGTCAACGCTTCGCCTTTCGTCTGACGGCTG------TTGGGTGAGGTGG
TGCTTCTTATAATGCCCTAGCTGTCGTATCC----------------------CCCTATGAGCTGCAATATTTTTATGCA
TT--------GGATCAAGTATGAGCTTGCTAGCCTC--TTCTTCTTT-CTGCACTGATGT-A--TGTAACTTATGATCAG
AACTTGTGGCTGCTATGTA-GTTGCATGAAATGCGTGCTTGTCTTGGTA-CCTTTTGGACTGAAGCGACTAATGGTGTGT
TATTGCTAAAATGACGAAGTATTTTTTTTAACTGGTGAAGTACTTTTTCTCTGCCTTTGAAATATTTTCCAACTGATCCG
CCTCATGTGTCTATTTTCTT-GGGCTGAGCAATTGACTTCACTTTATTTTAATTATATAGTTGTCTT---AGTACTCAAT
TATTAGCAATCCATATGCCTCATGTCCCTCTTCCTTGAACTGATGAACTGACATTCCTTT-TTATCCAGTGGTCTGCGTA
ATGGTCAATATAGCAGGTGTTCCCTGTTTCTACCTGCTATTGTAATTGATGATGAACAGAGGA-AGATTT-----TTTGT
TGACCTGCAAGCTGAATCTGATTTTTAGA---------------------------------------------------
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>chr3B_950
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-------------------------AGTGAAAGCAAACCGATAATAGTATTCGACACCATAGCTGAGTCGTTCCGTCAGA
TGCGTGCGCCAATTGTTCCCACCGACTCGTCTCTTTTTGATATGGATGGCACAGTCGGCATACATAGCAATAATACCACC
ATTGACACAGAAGTTATTGATATATGGGTGTTGAAGAACTACGAAAGGGAGGTTTGGGACTTCAAGTACCGGATTGAATT
GCCGTTCACAGAAATCAGGGGAATGTTTGCACACTG---------------------TGATGAA------CCTTGGGAGG
TGGACGTTGTTTCGGTGAATGGCGACGTGCTCTTGCTGGTCCATTTAGGTTGGCATCTGCTTTACGTTAACACTGATGGC
AAATTGTTTGAAAGTTCCTATTATGGTCATGGAAGCCTCTCTGTGTTCAAGTGTCGGCTCAAGCAAAGTCTTGTTCAGCA
CACCTTTTTTCCGTCTCTAGAAGGTTATGCTGTGAACGCTTCG-CTTGCATCTGACAACTG------TTGAGTGAGGTGG
TGCTTCTTA--ATGGCC----------------------TAGCCGTGTCGCATCCTTATGAGCTGCAATATC--TATGAA
TTTGGTATTTGGATCATGTGTGAGATTGCTGGCCTC--TTCTTCCTT-TTGCATTGATGT-ACGTATAAGTTATGATTAG
AAGCTCTGGCTGCTATGTTGGTTGCATGAGATCTATGCTTGTCTTGGTGCCCTTTTGCACTCAAGTGAGTAATGCTTTGT
TATTAACACTAAAATTA------------------TTAAGAGGTTTTGCTCTGTTTTTGAAATGTTTGCCAACTGACCCC
CCTCATGTGTCTATGTTCTT-GGGATGAGGAATTGACTCTGCTTTATTTTAATTTTCTAGTGGTCTTCTCAGTACTCAAT
TGTTGGCAATCCGTATGCCTCATTCCCCTCTTCCTTGAACTGAAGAATTGACTTTACTTT-TTATCTTGTGGTCTGCGTA
ATAGTCAATATATAGGGTGCT---TGTTTCTACCCGTCGCTGAAGCTGATGATGAA------------------------
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>chr3B_962
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-------------------------------------GTG---TTAGTATTTGACACCACAGCTGAGTCATTCCGGCACA
TGCGTGCTCTAGTTGTTCAGACCCTGAC----CTGTTTGAGATGGATGACACGTTGGGCATCCATTGCCTTCATCA----
--TGACACCGAAATCATTAATATATGGGTGTTACAAGATTATGAAAGCAAGGTTTGGGACTTCAAGTATCA-CTCAAATT
GCCGGCTGCAAAAATCAGGGAGCAGTTTGAAGACAATCG---------------------TGAG------AGTTGGGATT
TGGATGTTGTTTCGCGGGATGGTGACGTGCTCTTGCTGCTCAATTTTGGTGGGTGGCTGCTTCATGTTGACAGTGACGGC
AAATTGATTGACAGTTTCAATTGTGGTCGTAAAGATCTGTGTTTGCATAAATATCAGCTCAAACAAAGTCTTGTCCAGCA
TACCTTCTTTCCAGCTCTAAAAAGTTACGCAGTCAGTGACTCACCTTTGATCTGATGGCTC------TTGAGTGAGATGG
TGTTTCTTTCT---GCC----------------------TAGC--TGTCATATCCGTGTGACCTGCAATATC--TATGGA
TT--------GGACCAAGTATGAGCCAACTGGCCTC--TTCTTCGTT-ATGCATTGATGT-G--TATAAGTTATTATCAA
AAGCT---------------------------------------------------------------------------
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----------------------------------
>chr5D_1035
CCTTG---------------------------------------------------------------------------
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---------------------------------------AGATGGATGACAAGATCGGAATCTATAGCTACAATGA----
--TGCCATGAAAATTGTTCATATATGGGTGTTACAGAACTATGAAAGCAAGGTTTGGGACTACAAGTGCCGGCTCGAAAT
GCTAGTTGAAAAAATCAGGGACCGTTCGGGAAGGTG---------------------CAAGGAT------TATTGGGATG
CCAGCATTGTGTCTGTGGATGGTGACGTCTTCTTGCTGCTCAATCTTGGCGGATGGCTGTTGTATGTTGACACCGATGGC
GAACTTGTTGACAGCTTCCATCATGATGGCCAATACTTATATCCTTGGAAATGTCGGCTCAAACAAACTCTTGTTCCACA
TACCTTCTTCGTGGCACTAGAAAGCTATGTTGTGAATGGTTTTCCTTTCACCTGACGGCTT------TTGAGTGCGGTGC
TGCTTCTTG--AAGGCC----------------------TAGC--TCTCATA-CCCTTTGAGCTGCAATATC--TATGAA
TT--------GGATCAAGTATGAGCCTGCCGGACTCCTTTAGTCCTT-TTGCATTGATGT-A--TACCATTTGTGATCAG
AAGCTTTGACTATTATGTTGGTC-CATGAAATCTAAGCTTATCTCTGTACCCTTTGGGGCCCAAGTAACC-TTTGCTG--
TGTTGTTGCTAAAGCTA------------------TGAACTATTTTTCCTCTGCTTTTGAAATATTTGCCAACTGATCCG
CCTCACG-GTCTATTTTGTTGGGGCTGACGAATTGACTTCACTTTATTTTAATTATCTGTTGCTTCTTCTTA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATAGTTAAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>SNPs
--------------------------------------------------------S-----------------------
---------------------------S----------------------------------------------------
--------------------------------------S-----------------------------------------
-----------------------------S------------------------------------------------S-
---------------------------------------------------------S----------------------
--------------------------S----S-------------------------------------S----------
-----------------------S------------------S-------------------------------------
------------------------------S--SS--------------------------------------------S
--------S--------------------------------------------------------------S--------
-------------------------------------S---------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------SSSSSSSS----------------S-----------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---SS----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S----S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-----------------------------------------------------S--------------------------
---------S----S-S-----S--------------------------------S------------------------
-------------------------------------SS--------S--------------------------------
------S---------------------------S---------------------------------------------
-------------------------------------------------------------S------------------
S-------------------------------------------------------------------------------
----------------------------------
>forward_595
--------------------------------------------------------------------------------
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---------------CTGCGATGGCCTTCTTGTTG---------------------------------------------
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----------------------------------
>reverse_2481
--------------------------------------------------------------------------------
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TAGGAAAAGGGTTGGTGTGCT-----------------------------------------------------------
----------------------------------
