>input_sequence_80728
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------ATGTCGTACCCCTGCCTTCGCCGCGCCGCCGTGCCGGTAAAGCGGGTCTGGCTCGGCCTCCGCGGGCGCCTCGG
CCTCCGTCGATCCACCGGTGAGTTTCATCCTCATCCTCCTCCTACCTCTCCTGTCTGTTATCATCGTGGACGATGGAGCT
GATCAGTGGTGTTTCATCCATGAGTTGCAGGTCTTGGCGAGCTGCGCAGGGAGGTCCGAACGTGCGAGTACGACGACGTG
CACGTCATGTGGGAGCTGCTCAGCGGCATGGACGGCAGCGCGCCGCGGAAGTACGTGCACGCAGCCGCCACCGCCGCCAT
GGTTGACGCCGCCGCCCGGAAGAAGCTGAGGGGGAGGAGGCGGACGAGGAGGGCCGATGCCGAATCCGCCGCGTGGAGCC
GCCTCTTCTCTTCCTGCTGCGCCTTCTGA---------------------------------------------------
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>chr2D_1_TraesCS2D01G260200
AGCTACTAGTCGTGCACAAGATCTAGTTTATTCCGAATTTGTTTCCGCGCACCGTTGAAAAACTCTCCTCCACACTAACA
CGGCTGCGTGCATGTATGGAATCGATCATGCACCCGTCGCCACTGTCCATATCACGGCTGGCAACAGTCCGGAAAATATT
TGTGTCTCCGTTCATCTTGAGGGTGGCGTGCATGCATGTACTAGCTCGGTAAAGATCTAAACACTCTTATATTCTTTACA
A-----GGGA----GTACTACCTAATCGTAAGATTATCAAAGGGGCCAAATTATCAAAGCGGGAAGACCAACAATTTGTT
TCAGAAATCGAATGATCATATGTACTCTTATTTTGGGACGGAAGGAGTACTTATGAGGAGTAC-----GTGGCTGGCCAA
TCCTAGCCGGGAGCGCTAGCTTGCTGGCCTTGGCAGATTTTTACCGGGACACGCGTCGGCCGGTGCGCGTTTTCCTGCAA
CTGAAAACGGAGCACGTAGGGAGAAAAAACAAAATGGGCATCGAGTAGAGTAGAAATTACTGGA--------AGAGTACG
TACAGTGATGTTCAGCTAATCCTGAGCCGCTTGTTCAGACGCGCT--------GGTGCGCAGTGTGTGGCCAAGAGAGAC
GTACCCAGCGTCGCCGACTGCCATTCATGCTCCATCCACGTGCTCAATCGCGGGACACCGGCGCGTCCACGTCAGACGGT
CAGGTCAGTGACAATGGACGCCGTACGTCCGGTAAGACCGTAACAA--ACATCGCAACAGC-AAGAAAGAAATCGATCGG
TCCTCTTCTTCCT------TCTCTCACCCAGCTCGCCTATAAAGCAGACCTCAACGGGCGCCACAAACAGAATCAGAGAC
AGAGAGAGAGAGAGAGGGTGTGTGTGCTGGAGCTTGCTTGAT-AATTCTTCGG------CTCCAAGGGCAGACCGGCTGA
TCGGTAGAGGCAAAGATTTCTCTCGGCCAGCACTACAATCTTCACACTCCAAGCTAGAGAGCTCGCGCGCTAATTAAGCT
AGCAGCATGTCGTACCCCTGCCTTCGCCGCGCCGCCGTGCCGGTAAAGCGGGTCTGGCTCGGCCTCCGCGGGCGCCTCGG
CCTCCGTCGATCCACCGGTGAGTTTCATCCTCATCCTCCTCCTACCTCTCCTGTCTGTTATCATCGTGGACGATGGAGCT
GATCAGTGGTGTTTCATCCATGAGTTGCAGGTCTTGGCGAGCTGCGCAGGGAGGTCCGAACGTGCGAGTACGACGACGTG
CACGTCATGTGGGAGCTGCTCAGCGGCATGGACGGCAGCGCGCCGCGGAAGTACGTGCACGCAGCCGCCACCGCCGCCAT
GGTTGACGCCGCCGCCCGGAAGAAGCTGAGGGGGAGGAGGCGGACGAGGAGGGCCGATGCCGAATCCGCCGCGTGGAGCC
GCCTCTTCTCTTCCTGCTGCGCCTTCTGATCTCTCAAAATAAAGAAAATCCGAGCTGCCTGATGGCCGGGTTTGGAAAGG
ATGTTTTCGAGATCGATGAATCCTCTCTCTTCGCTCTTGACCGCGTGCAGCTATGATATA-AAGCAGCAATCGTG--GCG
AGACGGAGGAAGAAGTGATGACCCACTGTCGATTCGCGTGTAC----------GTAT-GTACGTATTGCGAGCTGTAAAT
ACAGGCGGCTCTGCTTCCATTTTGATGTAGTAAACCGACCCATGTAAAAGAGTTTACCATCATCACCACCCAGGGACAGT
TTTGTTCGTGTGCTAGTACA----GTA------AGTAGTTTGGTTGTCC-------------------------------
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-------------------------------------------------ATTTGAAAGTTCAATTGGTATTGCTAAAAAG
CAAAAAAAAAAACAACGAAAACAAATCTGCTTATTTCGTATTCTGCGTCGCTTAGTTGCGGGTGCCATCGTAAGGAACAA
ACGCCTAGTTGACAAACACCATCCGATAATGTATTTTGGATATGTAGCGAGGTCCAAACCAGCTCCGGCTACGAGGCACC
ACTGCGCTCTGACCACTGA-------------------------------------------------------------
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-------------------------------------GCATTGGTGTATTTGACATGATATTTTGTATCATATGTCTGCA
GAAAA----------ATATAGTGTTTTTGGTTCACTGGTCCTCAAGAATTTTTTTAACCACATGTACAATGTAAAATGGG
TTTTTTTTACAATTAAAATGGGTTAGTTCCTTTTCTCTAGTTACTACGTGAACGGTTTAAA-------------------
------------------------CTGTAGTTCAACTCTTTGCAACTTTTGTTGCCTCATCTTATTGT------ACGAGT
TGTTTGGTGAAAAATCTATAATATTACCAAGCTGAAATAAACCACACATGAATTGAAACTGTCTGGGTTTTTGGATAGGC
AGTCGGGATGC---------------------------------------------------------------------
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----------------------------------------------------------------------------AACT
AGCTAGGTTGGGGCGTAGAGGCAATATCAACCGGAGTGGTGTGCGGATAGCTCGGCACATATGGCTGGAGCGCAATAGGA
GTTTTTATTATTATCAATAATTCTCAACACCACAGAGGTGGCTAGGCGGGCAACATTAAACTCCCCTTTGAAGAC
>chr2A_1
AGCTACTAGTCGTGCACAAGATCTAGTTTATTCCGAATTTGTTTCCGCGCACCGTTGAAAAACTCTCCTCCACACTAACA
CGGCGCCATGCATGTATGGAATCGATCATGCACCCGTCGCCACTGTCCATATCACGGCTGGCAACACTCCGGAAAATATT
TGTTTCTTTGTCCATCTTCAGGGTGGCGTGCATGCATGTACTCCCTCGGTAAAGATCTAAACGCTTTTATATT---TCTT
TACCGTGGGA----GTACTACATAATCGTAATATTATCAAGGGGGGCAAATTATCAAAGCGGGAAGACCAACAATTTGTT
TCGGAAATCGAATGATCATATGTACT-------------------------TATGAAGAGT-CGTACGGTGGCCGGCCAA
TCCTAG-CGGGAGCGCTAGCTTGCTGGCCTTGGCAGATTTTTACCGGGACACGCGTCGGCCCGTGCGCGTTTTCCTGCAA
CTGAAAGCGGAACACGTAGGGAGAAAAAACAAAATGGGCATCGAAGAGAGTAGAAATTACTGGAAGAGTAGTAGAGTACG
TACAGTGATGTTCAGCTAATCCTAAGCCGCTTGTTCAGACGCG--------CTGGTGCGCAGTGCGCGGCC-AGGGAGAC
GTACCCAGCGTCGCCGACTGCCATTCGTGCTCCATCCACGTGGTCAATCGCCGGACTCCGGCGCGTCCACGTCAGACGGT
CAGGTCAGTGGCAATCGACGCCGTACGTCCGGTAAGACAGTAACTACTACAGCGCAACAGCAAAGAAAGAAATCGGTCGG
CCCTTTGCTCTTC---CTCTCTCTCACCCAGCTCGCCTATAAAGCAGACC----CGGGCGCCACAAACAGAATCAGAGAC
AGAGAGAGAGAG----GGTGTGTGTGCTGGAGCTTGCTTGATTAATTCTTCGGCCGCCCCTCCAAGAGCAGACCAGCTGA
TCGGCAGAGGCAGAGATTTCTCTCGGCCAGCACTACAATCTTTACACTCCAAGCTAGAGAGCTCGCGCGCTAATTAAGCA
AGCAGCATGTCGTACCCCTGCCTTCGCCGCGCCGCCGTGCCGGTAAAGCGGGTCTGGCTCGGCCTCCGCGGGCGCCTCGG
CCTCCGTCGATCCACCGGTGAGTCTCATCCTCATCCTTCTCCTACCTCTCCTGTCTCTTATCATCGTGGACGATGGAGCT
GACGAGTGGTGCTTCATCCATGAGTTGCAGGTCTTGGCGAGCTTCGCAGGGAGGTCCGAACGTGCGAGTACGACGATGTG
CACGTCATGTGGGAGCTGCTCAGCGGCATGGACGGCAGCGCGCCGCGCAAGTACGTGCACGTAGCCGCCACCGCCGCCAT
GGTTGACGCCGCCGCCCGGAAGAAGCTGAGGGGGAGGAGGCGGGCGAGGAGGGCCGATGCCGAATCCGCCGCGTGGAGCC
GCCTCTTCTCCTCCTGCTGCGCCTTCTGATCTCTC---------------------GCCTGACGGCCGGGTTTCGAAAGG
ATGTTTTCGAGATCGATGATTCCTCTCTCTTCGCTCTTGACCGCGTGCAGCTATGATATG-AAGCAGCAAACGTGTGCGG
AGACGGAGGGAGAAGTGATGACCCAGTGTCGATTCGCGTCTACGTAGTACGGAGTAT-GTACGTATTGCGAGCTGTAAAT
ACAGGCGGCTCTGCTTCCATTTTGATGTAGTAAACCGATCCATGTAAAAGAGTTTACCATCATCACCACCCAGGGACAGT
TTTGTTCGTCTGCTAGCACAATAAGTACATGCTAGTAATTTGCTTGTCC-------------------------------
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-------------------------------------------------ATTTGAAAGTTCGATTGGTATTGTTAAAAAG
CAAAAA-------AACAAAAACAAATCTGCTTATTTCGTATTCTGCGTCGCTTAGTTGCGGGTGCCATCGTAAGAAACAA
ACGCCTCGTTGACAAATACCATCCGATAATGTATTTTGGATATTTAGCCAGGTGTGAAAATCGATGAAACGGACCCTTTT
CTAACACTTCAACACAAAATGATCCGGATCTGAAAATATTTCACAAACTGATCCTTTTTCACATGACGTCCGGGCTGGG-
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----------------------------------------------------------------------TATGTCTGCA
GAAAATATAATCTCCATATAGTGTTTTTGGTTCGCTGGTCCTCAAGATTTTTTTTAACCACATGTTAGTACGA-------
-------------TAAAATGGGTTAGTTTTTTTTCTCTAGTTACTACATAAACGGTTTAAA-------------------
------------------------TTGTACTTCAACTCTTTGTAGCTTTTGTTGCCTCATCTTATTCT------ACGAGT
TGTTTGGTGAAAAAACTATAATATTACCGAACTGAAATAAACCATACATGAACTGAAATTGTCTGGGTTTTTGGATAGGC
ATCCGGGATGC---------------------------------------------------------------------
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----------------------------------------------------------------------------AACT
AGCTAGGATGGGGCGTAGAGCCAATGTCAACCGGAGTGGTGTGTGGATAGCTCGGCACATATGGCTGCAACGCAATAGGA
GTTTTT----TTATCAATAATTCTCAACACCACAAAGATGGCTAGGCGGGCAACATTAAACTCCCCTTTCAAGAC
>chr2B_1
AGCTACTAGTCGTGCACAAGATCTAGTTTATTCCGAATTTGTTTCCGCGCACCGTTGAAAAACTCTCCTCCACACTAACA
CGGCTCCATGCATGTATGGAATCGATCATGCACCCGTCGCCACTGTCCATATCACGGCTGGCAACAGTCCAGAAAATATT
TGTGTCTCCGTCCATCTTCAGGGTGGCGTGCATGCATGTACTCCCTCGGTAAAGATCTAAACGCTTTTATAGTATTTCTT
TACGGTGGGAGTACGTACTACCTAATCGTAATATTATCAAGGGGGCCAAATAATCAAAGCGGGAAGACCAACAGTTTGTT
TCGGAAATCGAATGATCATATG----------------CAGGAGTACTATTTATGAAGAGTACGTACAGTGGCTGGCCAA
TCCTAGCCGGGAGCGCTAGCTTCCTGGGCGTGGCAGATTTTTACCGGGACACGCGTCGGCCCGTGCGCGTTTTCCGGCAA
CTGAAAACGGAACACGTAGGTAGATAAAACAAAATG-GCATCGAGTAGAGTAGAAATTATTGGA--------AGAGTACG
TACAGTGATGTTCAGCTAATCCTAAGCCGCTTGTTCAGACGCGCTGGTGGCCTGGTGCGCAGTGCGCGGCC-AGAGAGAC
GTACCCAGCGTCGCCGACTGCCATTCATGCTCCATCCACGTGCTCAATCGCCGGACTCCGGCGCGTCCACGTCAGACGGT
CAGGTCAGTGGCGAGGGACGCCGTACGTCCGGTAAGACAGTAACTAC---AGCGCAACAGCAAAGAAAGAAATCGGTCGG
TCCTCTTCCCCTCTCTCTCTCTCTCACCCAGCTCGCCTATAAAGCAGACCTCAACGGGCGCCACAAACAGAACCAGAGAC
AGAGAGAGAGAGTGTGTGTGTGTGTGCTGGAGCTTGCTTGATTAATTCTTCGGCTA------CAAGGGCAGATAGGCTGA
TCGGCAGAGGCAAAGATTTCTCTCGGACAGCACTACAATCTTCACACTCCAAGCTAGAGAGCTCGCGCGC----------
---AGCATGTCGTACCCCTGCCTTCGCCGCGCGGCCGTGCCGGTAAAGCGGGTCTGGCTCGGCCTCCGCGGGCGCCTCGG
CCTCCGTCGATCCACCGGTGAGTTTCATCCTCATCCTCCTCCTACCTCTCCTGCCCGTTATCATCGTGGACGATGGAGCT
GATGAGTGGTGATTCATCCATGAGTTGCAGGTCTTGGCGAGCTGCGCAGGGAGGTCCGCACGTGCGAGTACGACGACGTG
CACGTCATGTGGGAGCTGCTCAGCGGCATGGACGGCAGCGCGCCACGGAAGTACGTGCACGTAGCCGCCACCGCCGCCAT
GGTTGACGCCGCCGCCCGGAAGAAGCTGAGGGGGAGGAGGCGGACGAGGAGGGCCGATGCCGAATCCGCCGCGTGGAGCC
GCCTCTTCTCTTCCTGCTGCGCCTTCTGATCTCTCAAAATAAAGAAAATCCGAGCTGCCTGATGGCCGGGTTTGGAAAGG
ATGTTTTCGAGATCGATGAATCCTCTCTCTTCGCTCTTGACCGCGTGTAGCTATGATATGAAAGCAGCAACCGTG--CGG
AGACGGAGGGAGAAGTGACGACCCACTGTCGATTCGCGTGTAC----------GTATAGTACGTATTGCGAGCTGTAAAT
ACAGGCGGCTCTGCTTCCGTCTTGATGTAGTAAACCGATCCATGTAAAAGAGTTTACCATCATCACCACCCAGGGACAGT
TTTGTTCGTGTGCTAGTACA----GTAAATGCTAGTAATTTGGTTGTCAATTTGAAAGGAGCAATGCTATGCGGACGACA
ACTTTTGGACGATTTGCAGACGACGATCGAATCCAGCGGTAGGAATCTGGTCCACAAAGGAGCAGCGGCCGCTTGATTGT
TTTGTCGTGCACAGATCGGCCAGGGCACATCGTGTGTAGAGCAATTTCGATTTGAAAGTTCAATTGGTATTGCTAAAAAA
GCAAGA-------AACAAACACAAATCTGCTTATTTC------------------------------------------A
ATGCCTAGTCGACAAATACCATCCGATAATGTATTTTGGGTATGTAGCGAGGTACAAATCCGATCCAGCCAGGAGGCACC
CCTGCGCTCTGACCACTGAGTTAAGACCCCATCCACGCATTGGTGTGCTCGTGGGCGGCGTCGGGGAACCCTAACCTACA
TCCTGGGGCCGCCTCCTATGCCCTCCCTTCCCCTCGCCGTCACCAGAAGGTGCCGCCGGGCGAAGCCCGATGCGCGTCGG
CGGCGGCGGGGCCTCTCACTCCTCGCAGCGCATGGCTGCATCGGGCGGCACGGCGGCCAGATGGCGGCGCGAGCGGACAG
CCAGGTTGTGGCGGCTATGCGTGGGGTTGGTTTCGGGGCGGCGACGCGGGCATGGATCTAGCGCGAATCTGGTCCTGCGG
GCGCGGGCTCGGCCTCCCCGAGTCAGTCAGCGGGTCTCTATATTGGGGCTTCTCCTTGTTGGGATCTGGCAGCGACGGCC
TGGATCGTCCTAATCCCGACAGGGATGACGGCGGTCCGTGCACAAGAGATGGAGGTTCTTCTAACAGATCTGGGTGAAAA
CCTGCCATAGTCTATTGCCAAGGCCGGTGGTGTCGGCGCTGTCTGCGTTGTTTCCTTCATGAAGGCATCATCATGGAGAA
ATTCAAGGCCACTCCCTGCTATCTTTGGAGGAAACCCTAGACCAGTAGGTCGGATGACGGGGCTCTCTGGTGTCGTTTTT
CCCTTGGGGCGTCATTTTTGTAGGTGCACACGGGCTCGAGGGACAGGAGGGCGGCTTCTTTGGTGGAGCGGTGCTTCATC
TTACACATCGTAGGTGACAGATCTCGACGGCGTGGTGCTGTGAAGACTCGGCGTTCGATGCGCGGAGATGGCGTCGATGG
CAGAGAAGCCTTGCAAGGTCGGTGCGTTAGTTTGCTCTGAAGATGGATTGGTGGAAGATGGTGGTGATGACACATGAGAG
TGCGTCGGACCGGTTTGTGCCCCAAACCCGCTATGTGGCTTGGTTGGAGCCTCTGGCTTTAGATGTTAGGCATTTGTGTG
ATGCCTGTTTCGTATTACGCTCGGAGTATCGGCACCCCTTCATCAATGGATAGAGGTAGCGATAGATGTTGCTAAGATGG
TGGCTTCAGACTACCTGATGTACTACTTTGTAAAGTGTTTCTGAATAATTAATAAAATGGCTGCATGCATCGCCCAAATG
CAGAGGCCGGGGTAATCATCCTTTTCAAAATATCCACGCATTGGTGTATTTGACATGAT-TTTTGTATCATATGTCTACA
GAAAATATAATCTCCACATAGTGTCTTTGGTTCAATGATCCTCGAGAACTTTTTTGACCATATGTTAG-ACGA-------
-------------TAAAAT-GGTTAGTTCTTTTTCTCTAGTTTCTACAGAAACGGTTTAAACTCCCTTCCAAACAGAAAC
ATTGGGAAATAAACCACTGAGAAACTGTAGTTCAACTCTTTGTAGCTTTTGTTGCCTCATCTTATTCTTATTGGACGAGT
TATTTGGTGAAAAATCTATAACCTTACTGAACTGAAATAAACCACACATGAACCGAAATTGCCTGGGTTTTTGGATAGCC
GGTTGGGACGGAACTAGCTAGAGTATATAGCAAAAAACAACCACATTACAGGCTTTTGTCCAAAAAACTGTCACTTTTTT
AATTTTTCTTAAACTACCACAAAGTGGTGGACTGTTCCAAAAACCCAAGTGTCGAATGGTTATTGTCTTAATCTGGATTA
TGACATGGAGGGCCCGCTCGCCAGCTCCATGTGGCAAAAAAGTCAACACCGTTAAGTAAACAGTTAGTTCACCGTTGTGA
CCGGGTGGGGCCCACATGCCATCTTCTTCTCCTCCCTTTTCTTCTTTGTCCTGTCGAACAGCCCCACCCCGCCGCCTGAG
CACCGCGCCGGCGAGCAGCCCCACCCCCACCCTAGCTGCCGCTGCGTGTAGCTATTGCCCGCCCCTGTTGCGTGCTTCTG
TTGCTGCCCGCCGCCGCCACTGCTGCTCGCCGCTGCTGTCCACCGCTGGTAGGTGTTGTGCTTGCCGCCGTCGCCTCGTG
TTGCTCGCTGCCGCTCTTCGTCGCTGCGTGCTGCTCCGGCCACCACGCCCAGGAGCCTCCCCCACCAGAGCGGGTGAGCA
CGCCACAGCCCCGAGCGCGCGCACCTATGGAGGAGAGAGGAAGCAGAGCAGGCAGTGACTCCGGCAGGCAGTGGGCGGCG
TGCAACTCGTCTCCATGCAAGGGGCGGGCATGCCTTCGTGCGGCCTGGCGGCGGGCGACTGCGAAGCCGCAACACTGCTC
GTTGGGGAGGAGCTTTAATGCGCAGGCCTCGTCGTTGTCCTCGGCGCGGCAGCCGTCGCCCTGGTTCTGGCACTACACAC
GTGCATAAAGCCGCAGCGCCTTGCGATGTGGTCGGCGAGCTCCTCCGGTGTCCTCGGCTCTGGCGAGTTCGTCGCCGATG
GGACCTGATGGATTTTATTATTTTTTGAAAAGGGCCCGATTGCTTTTTTGAAAAAAAATTGCAGGGACCAAATTGCTTTT
TTAGGACCTGATTGCCTTTTAAAAATACGTGGGGGCCACCTGTCAACGGTCAAGCTAACAGCAACCTGACGGGTGGGCCA
AACATGTCATAGTCTTGCTTAATTCTTAACGGTTCAGTCACTTGGGTTTTTTGAAACAGCAGACCACTTTTATGGTAATT
TTTTAATAGATTAAAAAAATGATCGTTTTTTGTAGACCTAGTCTGTAATGTGGTACAGTTTTTTGCTATATACTCGAACT
AGCTAGGTTGTGGCGTAGAGCCAATGTGAACAGGAGTCGTGTGCGGATAGCTCGGTACATA------------------A
GTTTTT----TTATCAGTAATTCTCAGCATAACAGAGGTGGCTAGGCGGGCAACATTAAACTCCCC---------
>SNPs
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-----S-S------------------------------------------------------------------------
-----------S------S-----------------------SS------------------S--S-------S---SSS
S------------------------------S--------S---------------------------------------
--S-----------------------SSSSSSSSSSSS-S-S--S-S--S------S-----------------------
-------------------------------------------------------------S------------------
-----------S--------------------------------------------------------------------
-----------------------S----------------------------------------S-S----S--------
---------------------------------------------------S----S-----------------------
----------S---------------------------S-----S------S-----------------------S----
---------S-SS-------------------------------------------------------------------
------------S-S-----------------------------------------------------------------
----S--------------------------------------------------------------------------S
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---S-------S--------------------------------------------------------------------
-------------------------------------------------------------S------------------
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-----------------------------------------------------------S----------S------SS-
---------S----------------------------------------------------------------------
--------------------------------------S-----------------------------------------
-------------------------------------S------------------------------------------
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------SSSSSSS---S---------------------------------------------------------S-----
----------------S------------------------------------S----S-S-S---S--S-S--------
S-------------------------------------------------------------------------------
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-----------------------------------------------------------S--------------------
-----------------------------------------------------------------SSSSSSS-SSSSSSS
SSSSSSSSSSSSS----------------S-----------------S-S------------------------------
------------------------------------------S-S---------------------S-------------
----------------------------S-S---------------------S-----S---------------------
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--------------------S----S-----------------------------------------S-S----------
------SSSS-----------------------------------------------------------S-----
>forward_203
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-----------------------TGGCGTGCATGCATGTACTA-------------------------------------
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>reverse_1598
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-----------------------------------------------------------------------------GCG
AGACGGAGGAAGAAGTG---------------------------------------------------------------
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