>input_sequence_80727
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--------------------------------------------ATGGCGCCCTCACGCAGAGCGGGCCGGCTCCTCTTC
CTCCCC-CTCGCGCTGGTGCACCTCCTCTCCTCCTGCCCGCACACCACCAGCGGCGCGCCCAACACGGCACCGCTCTCCG
TGCTCTGCAACGGCGCGGTGTACGGCGCCGGGGACCCCTTCGCGGAGAGCCTCGCCTACGTGCTGGCCGACCTGCTGGCC
GCCACGCCGCAGTCCCGCGCCCGCGACGCGTACACCATCTCCCCGTACCCGAACGCGTTCGCCTACGGCCACGCCGCGTG
CCGCGCCGGTCTGACGGGCGTGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGCCAGATGAACGCCACCTGTGGCCACG
CCGTCGGTGCGAGGGCCGTGCTCGTGGATTGCAGCGTACGGTACGAGCAGTACGCCTTCGTGGCTTAG------------
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>chr2D_1_TraesCS2D01G136800
AGGAAATGGGCTATTTATGGACGAAATCAAGTCATGCCATGA----GAGTAAAGCAGGAGAGAGAAG-AAATCAAGTGGA
GGCGCAACCAGAAGAAATAGAGTAAAAGACGGTGTATCATGCGACCGCGGCCACTCGCATGAGCC---GTATGGTGTGGA
AACTGATGCCTCTCGTGCACCTGAACAAATTTTATAAAAGGGTCGAGGCCGAAACATTAACAGAACAACCATGAGAGGAG
CCACAGAACAGAGTCATT-----------TTCATCAACCCTAACCGCCGTCATTTTCTATCTCCATAGCCACCATCTCCA
T---------------CTTCACCATAGTTCATCCTCCTCTAGTCATACTTGTAATTGTGTAGAACACACGACATCCATTG
TAAGACATGTTATCAATCAATCTATCTT--------------------------------TATGATATCCACGTGTGAGT
AGTTTGGTAAGGTATGAATTGTGGCAAGAGCCTTGCAACCAATAGATGTATT-GCG-CTTTTTCTTTGAATGTATTTGTG
AAAATTCAAAATTTATTTGGTTTGAAAGCTATGTGATTTTTATTCGATTGTAAACTATTTATTATTGCGATGTAAAATTT
ATGTGATTTAAACTTTGGGCAATGTTAAGATTTGTATGCAAAAATTATGTATAAATATGACATACCGACAACGGTCAAAA
TGCGTCGGCGAGTTGAGCGAACTGGTTATCAAAACGCGGACGGAGCCGAACTTCATCTTACAGACCAATCCAAACAGACA
AAAAAATGATCAAATCCAAATCCGTTTGAGCGTTGGAGTTGCCCTAATACG------TAGGCACATGGC---TCACATGC
GTCGCTCACATCGTCGTGCAAGCAGACAAGCATACAGACAAGCGGACGAGCAGTCTC-CGTGAAAACGACCATCGGCCGG
CCGGCCTCAGCCTGTCCGTCCTA---TCTTCCCACTCACAGATACCGTTGTTCCCAAAGCTCACAGCGCCACCAACAACC
ACACACCG---CTACTACACCCGTTGCCCAAGATCGGAGGCTCCATGGCGCCCTCACGCAGAGCGGGCCGGCTCCTCTTC
CTCCCC-CTCGCGCTGGTGCACCTCCTCTCCTCCTGCCCGCACACCACCAGCGGCGCGCCCAACACGGCACCGCTCTCCG
TGCTCTGCAACGGCGCGGTGTACGGCGCCGGGGACCCCTTCGCGGAGAGCCTCGCCTACGTGCTGGCCGACCTGCTGGCC
GCCACGCCGCAGTCCCGCGCCCGCGACGCGTACACCATCTCCCCGTACCCGAACGCGTTCGCCTACGGCCACGCCGCGTG
CCGCGCCGGTCTGACGGGCGTGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGCCAGATGAACGCCACCTGTGGCCACG
CCGTCGGTGCGAGGGCCGTGCTCGTGGATTGCAGCGTACGGTACGAGCAGTACGCCTTCGTGGCTTAGCTACCGCCCGGC
CGGCCGGCCGGCGTCCTCTCCCTGTGTTGGCACGTCCGCGTAGGTGTGTGTAGCCTATGGTTTGGCTGATGGAAATTTGG
GCTGCCGATTCAGTTTAAGATTCTACGGTGAAACATGTGTTGTTCCGTTTTGCTCTGCACACATGTGTTCTAGTGTTTGT
ATCCCAATTTGTATTGTGTTGTTGTTCTTCTCAAAAAAAAAAAATGTATCTCCTCCCAGCCTCTAAACATGTAAGGCAAG
GCCCAAAACATTTTATGAGCAGGG--------------------------------------------------------
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------------------------------------------------------TACACTAAATGACCAATAAAGATGGG
ATGTAAAACAGTACGACTAAGTCATCATCCTCCCACAGCAAATGTTTTTTTTGAG--AAAAAACTTTAGATCTATTCATT
AAACAACATGGTAGTACAAGAACACTAAAAGCAACAGTCC--------AGGTTCATAGACCATCTAATGATGAACCGAAG
GCGTGCCTCCGTCATTATCCCTCCCTCACCGAAGCGAGGCAAACTGTGACATCCCTAGTCTGGTAATGGCCTAGGTTAGC
TATTCTTGAATGCATCATGTTCAAATTTCTCTTAAACATGAAATGGTGAATGATCAAACCCTAGCACCACATTAATAAAA
TAGGTTCATCTAAAATATTTTTAATTGAACCTAAAATGCCCTTGAAAAATGTTAATGATTTAAGGTAAAATGTAAAACCC
TTAACCAGAGATTATGCACATTTTTGCATGGCATTTAGGAACTTTTGAATTGACCTATATTGTATTTGAGTTAGAGCTAA
TTAATCCTAAAGAATAGTTTTATAGCTCCAAATAATTTGAAACTTGGTGAGGGCCTCTGGAATAGTTCAGTTAGTGCCCA
CAAAAAGTTTCAGTTTTTTCAAAAATGATTTGGTTTGAAAATCAAATCAAACAAATTACAGAAAATAGAAAACAGAAAGA
AAAATAAGG--AGAGAGAGAGAGAGAGAGAGAGAGTGTGTGTGCTCACCTGGCCACCCAGCCCATCAGGA
>chr2B_1
AGGAAATGGGCTATTTATGAATGAAATCAAGCCAGGACATGAAAAGGAGAAAAGGAGGAGATAGGAG-AAATCAAGTGGA
GCCGCAACCAGAAGAAATAGAGTAAATGACAGTGTATCATGCGACTGCGACCGCTCACATGAGCGGTTGTATGGCATGGA
AACTGATGCTTGTCATCCACTTGGACAAGTTTTATAAAGGGGTGAAGGCCGAAATGTCAACAAAATAACCGTGAGAGGAG
CCACAAAACAGAGTCATCTTCACCCCATCTTCATCAACCCTAACCACCGCCATTTTCCATCTCCA---------------
T---------------CTTCACCACAGTTCATCCTCCTCTAGTCATACTTGTAATCGTGTCTCACACACGACATCCATTG
TAAGACATATTATCAAT-AATCTACCTTCATGATTTGTTCTATGATGTGTTCTTTTATAATATGATCTCCATGTGTGAGT
AGTTCGATAAGGTATGAGTCGTGGCAAAAGCGTTGCAACCAATAGATGTATCAGCC-CTTTTTCTTTGAATGTATTTGTG
ACAATTTAAGTTTTATTTGGCTTGTAAACTATGATATTTTTATTTAATTGTAAACTATTTATTTTTGTGATGTAATATTT
ATGTGATTTAGACTTTAGGCAACGTTAAGATTTGTATGCAAAAATTATGTACAAATCTGACATACCGGCCAGGAATGAAA
TGCATCGGTCAGGGCA--------------------------GAGCCGGACTTAGCCTTACCAGCCAATCCAAACGGATA
AAAAAA--ATCAAATCCAGGTCCGTTTGAGCGTTGGAGTTGCCCTAATACGATACGATAGGCACCTGGCACATCACATGC
ATCGCTCACATCGTAATGCAAGCAGACAAGCATACAAACAAGCGGGCTAGCAGTCTC-CGTGAAAACGACCATCGGCCGG
CCGGCCTCAGCCTGTCCGTCCTATCTTCTTCCCACTCATAGATACCGTTGTTCCCAAAGCTCACAGCGCCACCAACAACC
ACACACCAC-CCTACTACACCCGTAGCCCAAGATCGGAGGCGCCATGGCGCCCTCACGCAGAGCGGACCGGCTCCTCTTC
CTCCCC-CTCGCGCTGCTGCACCTCCTCTCCTCCTGCCCGCACACCGCCAGCGGCGCGCCCAACACGGCACCGCTCTCCG
TGATCTGCAACGGCGCGGTGTACGGCGCCGGGGACCCCTTCGCGGAGAGCCTCGCCTACGTGCTGGCCGTCCTGCTGGCC
GCCACGCCGCAGTCCCGCTCCCGCGACGCCTACAGCATCTCCCCGTACCCGAACGCGTTCGCCTACGGCCACGCCGTGTG
CCGCGCCGGTCTGTCGGGCGCGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGCCAGATGAACGCCACCTGCAGCCACG
CCGTCGGCGCGAGGGCCGTGCTCGTGGACTGCAGCGTGCGGTACGAGCAGTACGCCTTCGTGGCTTAGCTACCGCCCGGC
CGGCCGGCCGGCCGGCGT--CCTGTGTTGGTACGTCCGCCTAGGTTTGTGTAGCCTATGGTTTGGCTGATGGAAATTTGG
GCTGCCGATTCAGTTTAAGATTCTACGGTGAAACATGTGTTGTTCCGTTTTGCTCTGCACACATGTGTTCTAGTTTTTGT
GTCCCAATTTGTATTGTGTTGTTTTTTTTCTCAAAAAAAATATAT-TATCTCCTCCCACCCTCTAAACATGTAAGGCAAG
GCCCAA--AATTTTATGAGCAGGGTACGAGTAATGCTAGAGCTATAGGCTTGTTTTACATGGTTTATTGTACATGCTGAT
GTGGAGCAAACTGATTGGCTTAGGATTAGCAGCAGGGCCCCCACCCCCTGAAATCAGGGGGGGCGAGCGAATTAGCGAGA
AGGGGTCCGTAACGGACTTGTAAAACCCCTGTACGTCTAGGATTATCGGCAGGGTACACTAAATGACCAATAAAGATGGG
ATGTAAAACAGTATGACTAAGTCATCATCCTCCCATAGCAAATGTTTTTTTTTTTGAAAAAAACTTTAGATCTATTCATT
AAACAACATGGTAGTACAAGAACACTAAAAGCAACACTCC--------AGGTTCATAGACCATCTAATGATGAACCGAAG
GCGTGCCTCCGTCATTATCCCTCCCTCACCGAAGCGAGGCAAACTGTGACATCCCTAGTCTTGTAATGGCCTAAGTTAGC
TATTCTTGAATGCATCATGTTCAAATTTCTCTTGAACATGAAATGGTGAATGATCAAACCCTAGCACCACATTAATAAAA
TAGGTTCATCTAAAATATTTTTAATTGAACCTAAAATGCCCTTGAAAAATGTTAATGATTTAAGGTAAAAGGTAAAACCC
TTAACCAGAGATTATGCACATTTTTGCATGGCATTTAGGAACTTTTGAATTGACCTATATTGTATTTGAGTTAGAGCTAA
TTAATCCTAAAGAATAGTTTTATAGCTCCAAATAATTTGAAACTTGGTGAGGGCCTTTGGAATAGTTCAGTTAGTGCCTA
CAAAAAGTTTCAGTTTTTTCAAAAATGATTTGGTTTGAAAATCAAATCAAACAAATTACAGAAAATAGAAAACAGAAAGA
AAAATAAGAAAAGAGAGAGAGAGAGAGAGAGAG-------------------------------------
>chr2A_3
--GAAATGAGCTATTTATGGACAAAATCAAGGA----CATGA----GAGTAAAGGAGGAGATAGAAAAAAATCAAGTGGA
GGCGCAACCAGAAGAAATAGAGTAAAAGACGGTGTATCATGCGACTGCGACCACTAGCGTGAGCC---GTATGGCGTGGA
AACCGATGCCTCTCGTCCACCCAAACAATTTTTATAAAGTGGTCGAGGCCGAAATGTTAACAGAACAACCATGAGAGGAG
CCACATAACCGAGTCATCTTCATCCCATCTTCATCAACCCTAACCGCCGCCATTTTCTATCTCCA---------------
TAGCCCCCATCTCCATCTTCACCATAGTTCACCCTCCTCCAGTCATACTTGTAATCGTGTATAACACACGGCATCCATTG
TAAGGCATATTATCAATCAATATACCTTC--------------------------------ATGATATCCATGTGTGAGT
AGTTTGATAAGGTATGGGTTGTGGCAAGAGCCTTGCAACCAATAGATGTATT-GCTTTTTTTTCTTTGAATTTATTGGTG
AAAGTTTAAATTTTATTTGGTTTGAAAGCTATGAGATTTTTATTCGATTGTAAACTATTTATTATTGCGATGTAAAATTT
ATGTGATTTAAACTTGTGGCAATGTTTAGATTTGTATGCAAAGATAATTTTCAAATATGGCATACCGGTCGCGGACAAAA
TGCGTCGGCCAGTTGAGCGAACTGGTTAGCAAAACACGGATGAAGCGAGACTCCGCCTTACAGCCCGATACAAAAAACAG
ATT--------AAATCCGGGTCCATTTGAGCGTTGGAGTTGCCCTAATATG------TAGGCACATGGCACATCGCATGC
ATCGATCACATCGTCATGCAAGCAGACAAGCATACAAACAAGCGGACGAGCAGTCTC-GGTGAAAACGACCATCGGCCGG
CCGGCCTGAGCCTGTCCGTCCTA---TCTTCCCACTCATAGATGCCGTTGCTCCCAAAGCTCACAACGCCACCAACAACC
ACACACCACCCCTACTACACCCGTTGCCCAAGATCGGAGGCGCCATGGCGTCCTCACGCAGAGCCCACCGGCTCCTCTTC
CTCCCC-CTCGCGCTGCTGCACCTCCTCTCCTCCTGCCCGCACACCGCCAGCGGCGCGCCCAACACGGCACCGCTCTCCG
TGCTCTGCAACGGCGCGGTGTACGGCGCCGGCGACCCCTTCGCCGAGAGCCTCGCCTACGTGCTGGCCGACCTGCTGGCC
GCCACGCCGCAGTCCCGCGCCCGCGACGCCTACAGCATATCCCCGTACCCGAACGCGTTCGCCTACGGCCACGCCGCGTG
CCGCGCCGGCCTGTCGGGCGCGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGCCAGATGAACGCCACCTGCGGCCACG
CCGTCGGCGCGAGGGCCGTGCTCGTGGATTGCAGCGTGCGGTACGAGCAGTACGCCTTCGTGGATTAGCTACCGCCGGGA
CGGCCGG----CGTCCTCTCCCTGTGTTGGCACGTCCGCGTAGGTGTGTGT-------GGTTTGGCTGG------TTTGG
GCTGCCGATTCGGTTTAAGATTCTACGGTGAAACATGTGGTGTTCCGTTTGGTTCTGCCCACATGTGTTCTAGTGCTTGT
GTCCCAATCTGTATTGTGTTTTTTTCTTGTC--AAAAAAATAT---TATCTCCTCCCAGCCTCTAAATATGTAAGGCAAG
GCCCAAACAATTTTATGAGCCGGC--------------------------------------------------------
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------------------------------------------------------TACACTAAAGGACCAACAAAGATGGG
ATGCAAAACAGTACGACTAAGTCACCATCCTCCCCTAACAAATGTTTGTTTTCAG--AAAGAACTTAAGATCTATTCATC
AAACAACATGGTAGTACAAGAACACTAAAAGCAACATAAATTACATTTAGGTTCATAGACCACCTAGTGACGAGCCGAAG
GCATGCCGTCATCATTGCCCCTCCCTCACCAAAGCCAGACAAAC------------------------------------
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>chr2B_395
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------------------------------------------------------------TATGATCTTCAAATGTGAGT
AGTTCGATAAGATATGAGTTGTGGCAAGAGCCTTGCAACCAATAGATGTATT-GGCTCTTTTTCTTTGAATGTATTTGTG
ACAATTTAAATTTCATTTGGTTTGTAAACTATGAGATTTTATTCAATTTGTAAACTATTTATTATTGTGATGTAAAATTT
ATGTGACTTAAACTTTAGGTAATATTAAGATTTGTATGCAAAAGTTATGTACAAATATGGCATACCGGCCACGA-CAAAA
TGGGTCGGC-AGTTGAGCAAACTGGTTAGCACAAC---------------------------------------------
--------------------------------------------------------ATAGGCATCTGGCACATCATATGC
ATCGCTCACATCGTCATGCAAGCAGACAATCATACAAACAAGCGGACGAGCAGTCTCCCGTGAAAATGACCATCGGCCGG
CCGGCCTGAGCCTGTCCGTCCTA---TCTTCCCACTCATAGATATCGTTGTTCCCAAAGCTCACAGCCCCACCAACAACC
ACACACACA-CCTACTACACCTGTTGCCCAAGATCGGAGGCGCCATGGCATCTTCACGCAGAGCGGACCGGCTCCTCTTC
CTCCCCTCTCGCGCTGTTGCACCTCCTCTCCTCCTGCCCGCACACCGCCAGCGGCGCGCCCAA-----------------
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>SNPs
-------------------------------S--S-S-----------------S------S------------------
---------------------------------------------S---S------------------------S-----
----------------S-----------S---------S---------------SS------------------------
-----S-----------S-------------------------------S---------------SSSSSSSSSSSSSSS
-------------------------------------------------------S-----S------------------
--------S---------------S----------------------------------------------S--------
------S----------S-------------------------------------S------------------------
------S---S----------------------S----------------------------------------------
----------------S----------------------------------S---------------S-S----S-----
---------S------------------S------S----S-------S-----SS-------S--------------S-
------SS----------SS------------------------------------------------------------
S--------------S--------------------S-------------------------------------------
--------------------------------------S-----------------------------------------
-------S---------------------------------S------------------------S-------------
----------------S-----------------------------S---------------------------------
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-----------------------------S----S---------------------------------------------
-------------S------S---------------------------------------------------S-------
-------S-----------------------------S------------------------------------------
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S----------------------S--S-------------S-S--S----------------------------------
-------SS-----------------------------------------------------------------------
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-----------------------------------S----------------S---------------------------
------------------------------------S-------------------------------------------
-------------------------------------------------------------S-----------S------
---------------------------------S----------------------------------------------
----------------------------------------------------------------------S---------
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--------------------------------------------------------S---------------------S-
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--------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_126
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--------------------------AGACGGTGTATCATGCGACC----------------------------------
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>reverse_1310
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-----------------------------GTACACCATCTCCCCGTACC-------------------------------
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>forward_246
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------------------------------------------------------------------AACCATGAGAGGAG
CCACAG--------------------------------------------------------------------------
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>reverse_1315
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----------------------------------CCATCTCCCCGTACCCGAA---------------------------
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>forward_320
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-----------------------------------------------------------TCTCCATAGCCACCATCTCCA
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>reverse_1723
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------------------------------------------AATGTATCTCCTCCCAGCCTCT----------------
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