>input_sequence_80722
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----------------------------------------------------------------------ATGGCGCCCT
CACGCAGAGCGGACCGGCTCCTCTTCCTCCCCCTCGCGCTGCTGCACCTCCTCTCCTCCTGCCCGCACACCGCCAGCGGC
GCGCCCAACACGGCACCGCTCTCCGTGATCTGCAACGGCGCGGTGTACGGCGCCGGGGACCCCTTCGCGGAGAGCCTCGC
CTACGTGCTGGCCGTCCTGCTGGCCGCCACGCCGCAGTCCCGCTCCCGCGACGCCTACAGCATCTCCCCGTACCCGAACG
CGTTCGCCTACGGCCACGCCGTGTGCCGCGCCGGTCTGTCGGGCGCGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGC
CAGATGAACGCCACCTGCAGCCACGCCGTCGGCGCGAGGGCCGTGCTCGTGGACTGCAGCGTGCGGTACGAGCAGTACGC
CTTCGTGGCTTAG-------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G158100
TGAAATCAAGCCAGGACATGAAAAGGAGAAAAGGAGGAGATAGGAGAAATCAAGTGGAGCCGCAACCAGAAGAAATAGAG
TAAATGACAGTGTATCATGCGACTGCGACCGCTCACATGAGCGGTTGTATGGCATGGAAACTGATGCTTGTCATCCACTT
GGACAAGTTTTATAAAGGGGTGAAGGCCGAAATGTCAACAAAATAACCGTGAGAGGAGCCACAAAACAGAGTCATCTTCA
CCCCATCTTCATCAACCCTAACCACCGCCATTTTCCATCTCCATCTTCACCACAGTTCATCCTCCTCTAGTCATACTTGT
AATCGTGTCTCACACACGACATCCATTGTAAGACATATTATCAATAATCTACCTTCATGATTTGTTCTATGATGTGTTCT
TTTATAATATGATCTCCATGTGTGAGTAGTTCGATAAGGTATGAGTCGTGGCAAAAGCGTTGCAACCAATAGATGTATCA
GCCC-TTTTTCTTTGAATGTATTTGTGACAATTTAAGTTTTATTTGGCTTGTAAACTATGATATTTTTATTTAATTGTAA
ACTATTTATTTTTGTGATGTAATATTTATGTGATTTAGACTTTAGGCAACGTTAAGATTTGTATGCAAAAATTATGTACA
AATCTGACATACCGGCCAGGAATGAAATGCATCGGTCAGGGCA--------------------------GAGCCGGACTT
AGCCTTACCAGCCAATCCAAACGGATAAAAAAA--ATCAAATCCAGGTCCGTTTGAGCGTTGGAGTTGCCCTAATACGAT
ACGATAGGCACCTGGCACATCACATGCATCGCTCACATCGTAATGCAAGCAGACAAGCATACAAACAAGCGGGCTAGCAG
TCTCCGTGAAAACGACCATCGGCCGGCCGGCCTCAGCCTGTCCGTCCTATCTTCTTCCCACTCATAGATACCGTTGTTCC
CAAAGCTCACAGCGCCACCAACAACCACACACCACC-CTACTACACCCGTAGCCCAAGATCGGAGGCGCCATGGCGCCCT
CACGCAGAGCGGACCGGCTCCTCTTCCTCCCCCTCGCGCTGCTGCACCTCCTCTCCTCCTGCCCGCACACCGCCAGCGGC
GCGCCCAACACGGCACCGCTCTCCGTGATCTGCAACGGCGCGGTGTACGGCGCCGGGGACCCCTTCGCGGAGAGCCTCGC
CTACGTGCTGGCCGTCCTGCTGGCCGCCACGCCGCAGTCCCGCTCCCGCGACGCCTACAGCATCTCCCCGTACCCGAACG
CGTTCGCCTACGGCCACGCCGTGTGCCGCGCCGGTCTGTCGGGCGCGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGC
CAGATGAACGCCACCTGCAGCCACGCCGTCGGCGCGAGGGCCGTGCTCGTGGACTGCAGCGTGCGGTACGAGCAGTACGC
CTTCGTGGCTTAGCTACCGCCCGGCCGGCCGGCCGGCCGGCGT--CCTGTGTTGGTACGTCCGCCTAGGTTTGTGTAGCC
TATGGTTTGGCTGATGGAAATTTGGGCTGCCGATTCAGTTTAAGATTCTACGGTGAAACATGTGTTGTTCCGTTTTGCTC
TGCACACATGTGTTCTAGTTTTTGTGTCCCAATTTGTATTGTGTTGTTTTTTTTCTCAAAAAAAATATAT-TATCTCCTC
CCACCCTCTAAACATGTAAGGCAAGGCCCAA--AATTTTATGAGCAGGGTACGAGTAATGCTAGAGCTATAGGCTTGTTT
TACATGGTTTATTGTACATGCTGATGTGGAGCAAACTGATTGGCTTAGGATTAGCAGCAGGGCCCCCACCCCCTGAAATC
AGGGGGGGCGAGCGAATTAGCGAGAAGGGGTCCGTAACGGACTTGTAAAACCCCTGTACGTCTAGGATTATCGGCAGGGT
ACACTAAATGACCAATAAAGATGGGATGTAAAACAGTATGACTAAGTCATCATCCTCCCATAGCAAATGTTTTTTTTTTT
GAAAAAAACTTTAGATCTATTCATTAAACAACATGGTAGTACAAGAACACTAAAAGCAACACTCC--------AGGTTCA
TAGACCATCTAATGATGAACCGAAGGCGTGCCTCCGTCATTATCCCTCCCTCACCGAAGCGAGGCAAACTGTGACATCCC
TAGTCTTGTAATGGCCTAAGTTAGCTATTCTTGAATGCATCATGTTCAAATTTCTCTTGAACATGAAATGGTGAATGATC
AAACCCTAGCACCACATTAATAAAATAGGTTCATCTAAAATATTTTTAATTGAACCTAAAATGCCCTTGAAAAATGTTAA
TGATTTAAGGTAAAAGGTAAAACCCTTAACCAGAGATTATGCACATTTTTGCATGGCATTTAGGAACTTTTGAATTGACC
TATATTGTATTTGAGTTAGAGCTAATTAATCCTAAAGAATAGTTTTATAGCTCCAAATAATTTGAA
>chr2D_408
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-------TATGATATCCACGTGTGAGTAGTTTGGTAAGGTATGAATTGTGGCAAGAGCCTTGCAACCAATAGATGTATT-
GCGC-TTTTTCTTTGAATGTATTTGTGAAAATTCAAAATTTATTTGGTTTGAAAGCTATGTGATTTTTATTCGATTGTAA
ACTATTTATTATTGCGATGTAAAATTTATGTGATTTAAACTTTGGGCAATGTTAAGATTTGTATGCAAAAATTATGTATA
AATATGACATACCGACAACGGTCAAAATGCGTCGGCGAGTTGAGCGAACTGGTTATCAAAACGCGGACGGAGCCGAACTT
CATCTTACAGACCAATCCAAACAGACAAAAAAATGATCAAATCCAAATCCGTTTGAGCGTTGGAGTTGCCCTAATACG--
----TAGGCACATGGC---TCACATGCGTCGCTCACATCGTCGTGCAAGCAGACAAGCATACAGACAAGCGGACGAGCAG
TCTCCGTGAAAACGACCATCGGCCGGCCGGCCTCAGCCTGTCCGTCCTA---TCTTCCCACTCACAGATACCGTTGTTCC
CAAAGCTCACAGCGCCACCAACAACCACACACCG---CTACTACACCCGTTGCCCAAGATCGGAGGCTCCATGGCGCCCT
CACGCAGAGCGGGCCGGCTCCTCTTCCTCCCCCTCGCGCTGGTGCACCTCCTCTCCTCCTGCCCGCACACCACCAGCGGC
GCGCCCAACACGGCACCGCTCTCCGTGCTCTGCAACGGCGCGGTGTACGGCGCCGGGGACCCCTTCGCGGAGAGCCTCGC
CTACGTGCTGGCCGACCTGCTGGCCGCCACGCCGCAGTCCCGCGCCCGCGACGCGTACACCATCTCCCCGTACCCGAACG
CGTTCGCCTACGGCCACGCCGCGTGCCGCGCCGGTCTGACGGGCGTGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGC
CAGATGAACGCCACCTGTGGCCACGCCGTCGGTGCGAGGGCCGTGCTCGTGGATTGCAGCGTACGGTACGAGCAGTACGC
CTTCGTGGCTTAGCTACCGCCCGGCCGGCCGGCCGGCGTCCTCTCCCTGTGTTGGCACGTCCGCGTAGGTGTGTGTAGCC
TATGGTTTGGCTGATGGAAATTTGGGCTGCCGATTCAGTTTAAGATTCTACGGTGAAACATGTGTTGTTCCGTTTTGCTC
TGCACACATGTGTTCTAGTGTTTGTATCCCAATTTGTATTGTGTTGTTGTTCTTCTCAAAAAAAAAAAATGTATCTCCTC
CCAGCCTCTAAACATGTAAGGCAAGGCCCAAAACATTTTATGAGCAGGG-------------------------------
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-------------------------------------------------------------------------------T
ACACTAAATGACCAATAAAGATGGGATGTAAAACAGTACGACTAAGTCATCATCCTCCCACAGCAAATGTTTTTTTTGAG
--AAAAAACTTTAGATCTATTCATTAAACAACATGGTAGTACAAGAACACTAAAAGCAACAGTCC--------AGGTTCA
TAGACCATCTAATGATGAACCGAAGGCGTGCCTCCGTCATTATCCCTCCCTCACCGAAGCGAGGCAAACTGTGACATCCC
TAGTCTGGTAATGGCCTAGGTTAGCTATTCTTGAATGCATCATGTTCAAATTTCTCTTAAACATGAAATGGTGAATGATC
AAACCCTAGCACCACATTAATAAAATAGGTTCATCTAAAATATTTTTAATTGAACCTAAAATGCCCTTGAAAAATGTTAA
TGATTTAAGGTAAAATGTAAAACCCTTAACCAGAGATTATGCACATTTTTGCATGGCATTTAGGAACTTTTGAATTGACC
TATATTGTATTTGAGTTAGAGCTAATTAATCCTAAAGAATAGTTTTATAGCTCCAAATAATTTGAA
>chr2A_409
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--------ATGATATCCATGTGTGAGTAGTTTGATAAGGTATGGGTTGTGGCAAGAGCCTTGCAACCAATAGATGTATT-
GCTTTTTTTTCTTTGAATTTATTGGTGAAAGTTTAAATTTTATTTGGTTTGAAAGCTATGAGATTTTTATTCGATTGTAA
ACTATTTATTATTGCGATGTAAAATTTATGTGATTTAAACTTGTGGCAATGTTTAGATTTGTATGCAAAGATAATTTTCA
AATATGGCATACCGGTCGCGGACAAAATGCGTCGGCCAGTTGAGCGAACTGGTTAGCAAAACACGGATGAAGCGAGACTC
CGCCTTACAGCCCGAT--------ACAAAAAACAGATTAAATCCGGGTCCATTTGAGCGTTGGAGTTGCCCTAATATG--
----TAGGCACATGGCACATCGCATGCATCGATCACATCGTCATGCAAGCAGACAAGCATACAAACAAGCGGACGAGCAG
TCTCGGTGAAAACGACCATCGGCCGGCCGGCCTGAGCCTGTCCGTCCTA---TCTTCCCACTCATAGATGCCGTTGCTCC
CAAAGCTCACAACGCCACCAACAACCACACACCACCCCTACTACACCCGTTGCCCAAGATCGGAGGCGCCATGGCGTCCT
CACGCAGAGCCCACCGGCTCCTCTTCCTCCCCCTCGCGCTGCTGCACCTCCTCTCCTCCTGCCCGCACACCGCCAGCGGC
GCGCCCAACACGGCACCGCTCTCCGTGCTCTGCAACGGCGCGGTGTACGGCGCCGGCGACCCCTTCGCCGAGAGCCTCGC
CTACGTGCTGGCCGACCTGCTGGCCGCCACGCCGCAGTCCCGCGCCCGCGACGCCTACAGCATATCCCCGTACCCGAACG
CGTTCGCCTACGGCCACGCCGCGTGCCGCGCCGGCCTGTCGGGCGCGGACTGCGCGAGCTGCCTCGGCTCCGCCGTCAGC
CAGATGAACGCCACCTGCGGCCACGCCGTCGGCGCGAGGGCCGTGCTCGTGGATTGCAGCGTGCGGTACGAGCAGTACGC
CTTCGTGGATTAGCTACCGCCGGGACGGCCGG----CGTCCTCTCCCTGTGTTGGCACGTCCGCGTAGGTGTGTGT----
---GGTTTGGCTGG------TTTGGGCTGCCGATTCGGTTTAAGATTCTACGGTGAAACATGTGGTGTTCCGTTTGGTTC
TGCCCACATGTGTTCTAGTGCTTGTGTCCCAATCTGTATTGTGTTTTTTTCTTGTC--AAAAAAATAT---TATCTCCTC
CCAGCCTCTAAATATGTAAGGCAAGGCCCAAACAATTTTATGAGCCGGC-------------------------------
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-------------------------------------------------------------------------------T
ACACTAAAGGACCAACAAAGATGGGATGCAAAACAGTACGACTAAGTCACCATCCTCCCCTAACAAATGTTTGTTTTCAG
--AAAGAACTTAAGATCTATTCATCAAACAACATGGTAGTACAAGAACACTAAAAGCAACATAAATTACATTTAGGTTCA
TAGACCACCTAGTGACGAGCCGAAGGCATGCCGTCATCATTGCCCCTCCCTCACCAAAGCCAGACAAAC-----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS------S-----------------S--------------S-------S---S-------------------SS
--S-------------------------S-------S----------S---S--S------S---------SS-------
----------S---S-------S--------------S-----S-----S------------------------------
---S--------------S-S-SS------S----S---SSS--------------------------------------
S-------SSS-----------S--S----------------------------------------------------SS
SSSS-------S-----------------------------S------------------------------S-S-----
-------------------------------------------------SSS----------------------------
--------------------------------------------------S-----------------------------
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---------------------------S----------------------------------------------------
--------------S----------------------------S------------------------------------
---------------------S----------------------------------------------------------
------------------S----------------------------------S--------------------------
-------------------------------------SSS-SS------------S--------S-----S---------
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-------------------S------------------------------------------------------------
---S---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
--------------------------------------S--------------------------------------SSS
SS-----------------------------------------------------------S------------------
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------S-----------S---------------------------------------S---------------------
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---------------S----------------------------------------------------------------
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>forward_139
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---------------------------------------AGCGGTTGTATGGCATGGAA---------------------
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>reverse_1857
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----------------TTAGCGAGAAGGGGTCCGTA--------------------------------------------
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