>input_sequence_80681
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---------------------------------------------------------------------ATGGAACAGCC
GACCGGCGAGCAGGATCAGGATGAGCTCAACCTTGAACTCACCCTCCTCATCCCGGCTACACCGGGTCCCGATGAGGGCT
TCTTCCTCTGCGCGTACTGCGACCGTAAGTTCCTCAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGCACGAG
CGCAGCGTCGCCAAGCGCCGGCGGCTGATTGCCGCCGCAGCGCGCACGCACGGTGCCGGTGCGCCTACTGCAGCGCAGGA
TGAGGGCCAGACGTGGTATGGCGGCAGAGGGGGCGGCGATTTCCTGTCTGCGGATGGAAAGGCGAGAAGGACGGAGCCGT
GGAAGTCTGCCGCTGT---------TGGAAAGGCGTGCGAGCGTGGCAGGACATCGTCGGAGCACGGCGC---------C
GCTGACGAGGTGGACTTGGCTCTCAGGCTATGA-----------------------------------------------
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>chr5A_1_TraesCS5A01G492600
AAAATCATGGACCAGGGAGAAATCAAGGATGGATGAGCCAGAACCAACCGTGTGCATATCGATGGCGATGGCGTGATCCG
CGTGCGGTGGCCGGAGATGAGAAAATCCTCGTCCAGGTTGCCGGAGATGACATCCAGTGGGCCCCGACTCGGTCGGAATC
GGCACCGGGGTG-GCGGGTTGGCTCCATGACGGCGTCCGGCTGCGACGACCGGACGGCGCACCTGTGGGACTTGCGTTCC
CCCACAGGGCGCCACGCGGCGAGCCGGCGACGGCCAGCTATGCGTGGAGATTGACCCGGCTTCCAGGCGACTTGCGCTCC
CAGATCAGGAGCAGGCGGCGCCGCTGTTGTTCGCGGCCTCGGTCGCGAGGCCGGGGGCCGTCCAGGTGAGGAGCTGGGCT
CGGAGAGGAAGGGTGCCGGCGACCATGAGGGTACCGATGTCGGTGAAAAAGACTTTGGCCATAGGCCTGGCCTCGACATC
CCGCATGTT----TGCTCTTCCG------------------------CAAATTAACGCCCAACCCCGGCAAAAAAAGAAG
AAGCAAATTAAGACTAGCTATAATGGTTAGTAATATAAAGTAGTAACTACCCGCAAAAAAATAAAATAGAGTAGTAACAT
GGGCATGTTACTACTCTATGTTACTACCTCTATAACGAGGAGTAACATATGTGTAGTAACATGCAATATTTTAAGTATTA
GGCTGTAGACTCATCTTATCTTAATATGTGTGATGTTACTCAAGCTAGTAGTAACTAGCTATGTTAACACATGCATCTTT
TTCTTCATTTATTGTTTGTCACATCATTTATTTTATCTAAATATGTATGATGTTACTATCTATATTACTTCCACTGTGGG
TAAGAGTGCAACAACAGTTCTGTGCCCAGTGCTAAACTGCTAGCCGTGTATTTAATCCTTTGTTTAGCGAGCTAATAAGT
TCTGGTCGACTCTCTACTCTCTAGTCTCTACCTTTCAGCCTCATAGGCGATAGCAAGTCCATAACTAGAATGGAACAGCC
GACCGGCGAGCAGGATCAGGATGAGCTCAACCTTGAACTCACCCTCCTCATCCCGGCTACACCGGGTCCCGATGAGGGCT
TCTTCCTCTGCGCGTACTGCGACCGTAAGTTCCTCAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGCACGAG
CGCAGCGTCGCCAAGCGCCGGCGGCTGATTGCCGCCGCAGCGCGCACGCACGGTGCCGGTGCGCCTACTGCAGCGCAGGA
TGAGGGCCAGACGTGGTATGGCGGCAGAGGGGGCGGCGATTTCCTGTCTGCGGATGGAAAGGCGAGAAGGACGGAGCCGT
GGAAGTCTGCCGCTGT---------TGGAAAGGCGTGCGAGCGTGGCAGGACATCGTCGGAGCACGGCGC---------C
GCTGACGAGGTGGACTTGGCTCTCAGGCTATGATCGATCTGCTCATGTGTTCCTGATCCCGGCCCAGTTACC-CGCCCTG
ATTTGCTAGTTGACCTCGCGCATCCGC--GCTGTTTCGGTATGCTATAAGGTCTTCTTTCCTGACACATATGTACTTGTG
AAATTGCTTCTATGCTTGCCTGTTTCAAGCTCTGCGTGTGTTGGATTCATATGTTCTTCTTTCAGTTGAG-TTTTTCTCA
TGAAATTCCTTGACCAGAAAGAACGTGTGGTAATTTACATTTATTCATTCGAAAGCCGGGAAATTTCGATTTCTTGTTTA
CTCAGTTCTATTGTTCTATGTATGC------TTTCATTGCTGAGCTTCTTCAAGTGATTCAAATATATATTCCATGAGTG
TATATTTTTTGTAGTACCTGATTAATGTCTATTGTGTAACTGTGA----------GCGCCAGCGAGATCTTGAGTTTAAC
AGCTAGTTCGTATATACAAAGCTGAGTTGCACGTATACAACC---AGTCAATCTGCCACACGAGATCGAGTGTTGATCTC
TAGGAGAAGCTAGCATCTTGTGTGTATGATTTGGCTAGTAGGAGCACTGCAACACCCACTTAGAGAGACAGTCCAATGTC
CTCTGAAATTTCCACATTTGAACACAACATTAGTGAATTTTAAGGTAAAGAAAATGAATGTAAAACATGCACATATCAAA
TGACTTGATTTGGAAATATAATCCTAGAAGAGATTATGGTTAGTGTGTGTCA----CATTCTTGAATGTAGCCAGCATGG
TGGCCCTCGCAAATCGAAGTGCATCATCTCTAGTGTGTTGAGTATTCGCTAGACATTTTTGCATGCTAATTACACCACTC
ATTGCAAAATACACATTATTTGTGCGTTGGACATTTATTTTGTATATAAGAAATAATCAAAAAGAATTATGAAACACTTG
TCTACGAACGAACTGACGGGGTCAATTCTTTTTTCTCTCAGTAAACAACAATTCGGCGTGGAGTTCTGAGCACACCAATA
AGACAAACCTGTATTTGGCA
>chr4B_1
AAAATAATGGACCAGGGAGAAATCAAGGATGGATGAGCCAGAACCAACCTTGCGCATATCGATGGCGATAGCGTGATCCG
CGTGCGGTCGCCGGAGATGAGAAAATCCTGGTCCAGGTCGCCGGAGATGACATCCAGTGGGCACCGACTCGGTCGGGATC
GGCACCGGGGTTAGCGGGATGGCGCCATGACGGCGTCCCGCTGCGACGACCGGACGGCGCGCCTGTGGGACTTGCATTCC
CCACAGGGCGTACG---GGCGAGCCGGCGACGGCCAGCTGTGCGTGGAGATTGACCCGGCTTCCAGGCGACTTGCGCTCC
CAGATCAGGAGCAGGCGGCGCCGCTGTTGTTCGCGGCCTCGGCCGCGAGGCCGGGGGCCGTCCAGGTGAGGAGCTGGGCT
CGGAGAGGAAGGGTGCCGGCGACCATGAGGGTACCGATGTCGCTAAAAAAGACTTTGGCATTAGGCCTGGCCCCGACATC
CCATATGTTTAAGTGCTCTTCCGTTGCCACAGGCCCACAGCCGTTAGCAAATTAACGCCCAACCCCAGCAAAAAAAGAAG
AAGCAAATTAACGCACACGTGACTCCGCTGAATT----------------------------------------------
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-----GTGCAACAACCGTTCTCTGCGCAG--------TGCTAGCCGTGTATTTAATCCTTTGCTTAGCAAGCTAATAAGT
TCTGGTCGACTCTCTACTCTGCCC-CTCTACCTTTCAGCCTCATAGGCGATAG-AAGTCCATAACTAGAATGGAACAGCC
GACCGGCGAGCAGG------ATGAGCTCAACCTTGAACTCACCCTCCCCATCCCGGCTGCACCGGGTCCCGACGAGGGCT
TCTTCCTCTGCGCGCACTGCGACCGTAAGTTCCGCAGCTCGCAGGCGCTCGGCGGCCACCAGAACGCGCACAAGCACGAG
CGCAGCGTGGCCAAGCGCCGGCGGCTGATTGCCGCCGCAGCGCGCACGGATGGTGCCGGTGCGCCTACTGCAGTGGAGGA
TGAGGGCCAGACGGGGTATGGCGGCAGAGGCGGCGGCGATTTCCGGTCTGCGGATGGAAAGGCGAGAAGGACCGAGCCGT
GGAAGTCAGCCGCTGT---------TGGGAAGGCCTGCGAGCGTGGCAGGACATCGTCGGAGCACGGCGC---------C
GCCGACGATGTGGACTTGGCTCTCAGGCTATGATCGATCTGCTCATGTGTTCTTGATCACGGCCCAGTTCCC-CACCCTG
ATTTGCTAGTTGACCTCGCACATCCGC--GCTGTTTCGGTATGCC--AAGGTTTTCTTTCCTGATACATATGTACTTGTG
AAACTGCTTCTATGCTTGCCTGTTTCAAGCTCTGCGTGTGTTGGATTCATACGTTCTTCTTTCAGTTGAGTTTTTTCTCA
TGAAATTCCTTGACCAGAAAGAACGTTTGGTAATTTACTTTCATTCGTTCGAAAGGCGCGAAGTTTCGATTTCTTGTTTT
CCCAGTTCTATTGTTCTATCTTTGC------T-----TGCTGAGCTTCTTCAAGTGATTCAAATATATATTCCATGAGTG
TACATTTTTTGTAATCCCTGATTAATGTCTATTGTGTTACTGTGA----------GCGCCAGCGAGATCTTGAGTTTAAC
AGCTAGTTCGTATATACAAAGGTGAGTTGCACGTATACAACC---AGTCAAGCTGCCACACGAGATCGAGTGTTGATCCC
TAGGAGAAGCTAGCATCTTGTGTGACTGATTTGGCTGGCAGGAGCACTACAACACCCACTTAGAGAGACAGTCCAATGTC
CTCTGAAATTTCCACATTTGAACGAAATATTAGTGAATTTTAAGGTATAGAAAATGAATGTAAAACATGCACATATCAA-
TGACTTGATTTGGAAATATAATCCTAGAAGAGATTATGGTTAGTGTGTGTCACATGCATTCTTGAATGTAGCCAGCATGG
TGGCCCTCGCAAATCCAAGTGCATCATCTCTAGTAGGTTGAGTATTCGCCAGACATTTTTGCCTCCTAATTACACCACTG
AACGCAAAATACACAGTATTTGTGCCTTGGACATTTATTTTATATATAATAAATAACCAAAAAGAATTATGAAACATTTA
TCTATGAACAAACTGACAGGGTCGATTCTTTTTTCTCTCAGTAAACAACAATTCGGTGTGGAATTGTGAGCACACCAATA
AAACAAACCTGCATTTCGCA
>chr4B_956
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------------------------TCTCTAGCTTTCACCCTCATAGGCGGTAGTAAGTCCATATCGACAATGGAACAGCC
GACCGGTGAGCAAG------ATGAGCTCAACCTTGAGCTCACCCTCCGCACCCCGGTCGCACCGGGCCCCGACGAGGGCT
TCTTCCTCTTCATGTACTGCGACCGTAAGCTCCGCAGCGCGCAGGCGCTCGGCGGCCATCGGAACGCGCACAAGCACGAG
CGCAGCGTCGCCAAGCGCCAGCGGCACATCGCCGCCGCGACACGCGCACAATGGGCGCAGTAC------GCCCCGCCGGA
CGAGGGGCCGACCCGGTACGGTGACAGAGGCGGCCACCATGTCGTGTGTGCGGCTGAGAAGGCGAGGAGGACGGAGGCGC
GGGAGGCTGCTGCTGCTGCTGGCGCTGGAATGGCGGGTAAGCGTGGCAATACTACGTCGGAGTACCGCACCATCGAGCAC
GCGGACGATGTGGACTTGACTCTCAGGCTATGATCGATCTGCTCAGTTGTCCCAGATCCCGGCCCAGTTTTCACACCCTG
CTTTGCTAGTTGACCGCGCGCATCCGCTAGCTGTTTCGGTATGCC--AAGGTTTTCTTTCGTGATGCTTATTTACATGCG
AAACTACTTCTATCGTTGCCTGTTTCAAGCTGTGTGTGTGTTGGATTCAT-TGTTCTTCTTTCAGTCAAGTTTTTTCTCA
TGAAAATCCTTGTC-----------TTTCGTAATTTACATTTATTCATCAGAAAGGG----AGTTTCGATTTCTTGTTTT
CTTATTTCTACTGTTCTATCTTTACTTTCATT-----TGCTGGGCTTCTTCAAGTGATTCAAACATAGATTCCATGTGAG
TATA-TTTTTGTAGTCCCCGTTCAATGTCTATTGTGTTACTGTGAGAGCGCCACTGCGCCAGCGTAATCTCGAGTTTAAC
ACCTAGTTCGTATATACAAAGGTGGTTTCCACCTATACAACCGGTAGTCAGGCTGCCACCCGAG----------------
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>SNPs
-----S-------------------------------------------S--S----------------S----------
--------S--------------------S--------S-----------------------S-------------S---
-----------S------S----S--------------S---------------------S--------------S----
--SSSS--SSSS-SSSS----------------------S----------------------------------------
------------------------------------------S-------------------------------------
------------------------------------------S-S--------------SS-----------S-------
--SS--------------------------------------------------------------S-------------
-----------SS-SSS-SSS-S-SSSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS----------S-----S---S---SSSSSSSS-------------------------S-----S-----------
--------------------SSSS-----------------------------S--------------------------
--------------SSSSSS---------------------------S----------S-------------S-------
---------------------------------S----------------------------------------------
--------------------------------------------------S-----------------------------
-------------S----------------S-------------------------------------------------
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--S-----S------------------------------------------------------------S----S-----
--------------------------------------------SSS-----S-----------S---------------
---S----------------------------------------------------------------------------
--------------------------S----------------------------S--S---S----------------S
-------------------S-S----------SSSSS-------------------------------------------
---------------S---------------------S------------------------------------------
---------------------S-----------------------------S--------------------------S-
------------------------SS----------S-S---------S-------------------------------
-----------------------SS--S-------------------S-------------------------------S
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---------------S------------------SS-------------S------------S-S--------------S
-SS------------S---------S---------------S-------S------S-------------------S--S
----S----S-------S-----S--------------------------------S-----S--S--------------
-S---------S----S---
>forward_914
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--------------CAGTTCTGTGCCCAGTGCTA----------------------------------------------
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>reverse_2037
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------------------------------------AGTAGGAGCACTGCAACACC------------------------
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