>input_sequence_80660
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--------------------------------ATGGTCGATGCAGTGGGCACCGTGACCAAGATTGTGGAAGTTGCACTA
AAGATCAAGAAGGCTGCAGACACGGTGAAGCAGAATGAAGATGCCTGCAAGCAAATAAAAAGCCGCGTGGAGATACTCAG
TACTACGTTGTCGCAGCACCAGAATAACACAGAGCTAATGAACAACTCGGCAGTGAGGCTCGCACTTGATGCGCTGGCCG
ATATCCTTGGTGAGGCCTTGAAGCTCGTCACCGACTGCCAGGAGGAGGACACCAACTTCCCGTGCCTTCTCTACAGTTCC
GGGAAACTGTCCCAAGAGTTAATGAAGGTGGAGCAACATATATCCAATAAGAACATGGATGCGACGTTGGCCATCATTGC
TTTCCTTTTACCTAAACCAAT---------TGGTCCAGTCAGTTTACCTCCAGCTCA------ACAGGTATGA-------
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>chr3B_1_TraesCS3B01G559600
CAGGAAAATTGTGACCGATGCTGCCGAGTGGATACAAGCGTGGTGGTGATGGAATCTAAATTAAGTGCATTCTAACAAAA
TTAATAGATGATCCGCACCAAACATATTATAATAATAACCTACGAATAAGATCTAGGAAAAAATTCCTAAGGATCTCAGC
CTCGAAAATTTCTCTAAAAAAACCTTAGAATCAAAAAGGCCTTAATGGTCTTATGCTTACATGTCACTCCTTTCTTGTTT
GGCAGCCTTTATGTAGATGTAGTACAGCAAATTGTGCCACTTTGGCATGCGTTCTGTCTATTCTCGATGCCCAACAATGT
ATTATTAAGTTAGAAAGACGAACATGGACAAACTGTAGGACATCATAACCATCAAATCACTGCTTTCCTACATCTAAATA
ATCAAACTGTGGGCATGGTACTTCTCTGAAGCAACCACTTTTTTTTCTCTGCAGGACCCAGTCTTGTGTGGCGCACCAAG
GAGAGAATACAATATGGCAATATTAAAAATAATGACGGTGATGTCAAGAGGAAAACGATGTGGTAGTGCATTATAAAAAG
TGATGGCGGCACTATCAATGGCACATCATAACAAGGTTGGCCGTTTTATTTTAGCATGCCGTCTCGCAGTCTCCTAATCC
TTCCCTGGAGCCCACCTGGTGTGGGAGCTTCTAGCACTGGGTCTGTCCTTTATGCCGTATTGCAG---------------
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------TCTGTCCATTCACGTTTCTTTGACACTTCCAGAGAAGACCCTGTCACCGGTGGGAGCAAGCGCGTTATCTGTGT
CCAGAACAGATTAGTTCATTTATTCGAGAAGACTTGCTCCCGAGCCGATACTGGAATCGCTCGTTTCGAGAAAGACATGT
GCAGGGGAAAGAAAAGGAGAATTAATCCAAGAAATCAGGTTAGTGCTA--CAACTGCTAATCGGCTTATTACTTGTTTTC
ATGAATTCCTCAGTTTATTAA-----TTAGTTC---------------ATGTC--------------ATTAGAATTGATC
TGTGCCTAGTCCCTAC---------------GATGGTCGATGCAGTGGGCACCGTGACCAAGATTGTGGAAGTTGCACTA
AAGATCAAGAAGGCTGCAGACACGGTGAAGCAGAATGAAGATGCCTGCAAGCAAATAAAAAGCCGCGTGGAGATACTCAG
TACTACGTTGTCGCAGCACCAGAATAACACAGAGCTAATGAACAACTCGGCAGTGAGGCTCGCACTTGATGCGCTGGCCG
ATATCCTTGGTGAGGCCTTGAAGCTCGTCACCGACTGCCAGGAGGAGGACACCAACTTCCCGTGCCTTCTCTACAGTTCC
GGGAAACTGTCCCAAGAGTTAATGAAGGTGGAGCAACATATATCCAATAAGAACATGGATGCGACGTTGGCCATCATTGC
TTTCCTTTTACCTAAACCAAT---------TGGTCCAGTCAGTTTACCTCCAGCTCA------ACAGGTATGATTCATTC
AGAACTTTTGTCATCCTTGCGTGATACTAATGTCTTCCAGAGTGCTCATTTGAATGGCAAGACAAATTGACATGCTATCC
AAGTAACTCTCCAGCTGAACCAATGTCCAGGCTTCCAGCATACACACCTCCTCCCCCTACCCATGAATTATACTTTTGAC
TTCTTCCAGCATCTCCCTT---GTAATGGCGTTCGGCACTATTGGAACTTCTATCGATGGGACCTACCACACACTAACTG
GGCCG--------------------------------------------ATGCTAAACTGACCCAAAGAGGTTTGACGTG
TTACAAAATGGTTAGGTCGGCCAGAGAAGGTCATACCAGTGACTTTTTTGCTAATTAGACTGGCATTGTCCATGGAAACT
CATATTAGAGGCTGTAGAGTGAGGATGGCAATCAGAAGTGGACCGGTCACACGAAAGATTAAGCTCCTACCCCCCTCTCC
CCTCAAACTCTTCAATAATTGTCAGTATTTCAAGTCAGGAACACCCCTACCATCATTGGACACAATGGAAAGGCACGTGT
TCTAATCATGACTTGGAGTGGTAAATAATCTCTTTCCTCGTATATATTTTCACGTCCGACCTTACTTACATGTCCCTTCA
GAATTTTCAGGATTGTCATGTCGGCAAACAAGCGCCTTTCCAGTTCTTAGCAACGCAACCACCAAATACGCTCCAACAGG
TACCATACAGTACATCCCTAAGTACAATATGATGCTCGAGTAATATTATGTTTTGAATCATATATCCAGATTCGGTCTAC
TAAGTGAGTAATAGTAATTCTATGGTATAATGGAGTATA---CATGAATGATATTATGTGTGGTTATGATGCTGATGCAG
ATGTGCAGACAAATTCAAGACGAGAGTGATGTGGATGTTCAGATTGACTCATTTGTATGTTTTGTTTCCCACTTGTTGTA
CATAACTTACTGGAAAAATATGACGCAATTTTCTGGATAGAATGTTCATCCTGCTATATTTGGACACTCTCATGGCAAAT
ATT
>chr3B_701
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------------------------------------------------------------TGCAG---------------
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------TCTGACCATTCCAACTTATTCAAAATTTCCAGAGAAGACTTTGTCCCCTGTGGAAACAATCGCATAATTTGTGT
CCGTAGCTC----GCTCATTAATTCGGGAAGACTTGCTGCTGAGCCAATACTGGAATCGCTCGTTTGGAGGAAGATTTCT
GCAGGGG-AAGAAAAGGAGAAT----CCAAGAAGCTAGGTTGGTGCTC--TAACTGCTAATCAGCTTATTAGTTATTTCC
AGTAATTGCT---TT-ATTAA-----TTAGTTC---------------ATGTAATTAACGTACTTCTATTGAAATTGATC
TGCAGTCTGTACTGTCTGACTCCGTGCCTAGGATGGTCGACGCAGTGGCCGCCGTGACCAAGATTGTGGACATTGCACTG
AAGATCAAGAAAGCTGCAGACACGGTGAAGCAAAATGAACATGCCTGCAAGCAAATGAAAGGCCGTGTCGAGATACTCAG
TACTACGTTGTCGCAATACCAGAATAACATGGCGTGAATGAACAACTCGGCAGTGAGACTCGCATTGGCTGCGCTGGCCG
ATATCCTTGGTGAGGCCCTGAAGCTCGTCACCGACTGCCAGGAGGAGGACACCAACTTCCTGTGCCTTTTCTACAACGCT
GGAAAACTGTCCCAGGAGTTAATCAAGGTGGAGCAGCATATATCCAATAAGACCATGGATGCGACGTTGGCCATCATTGC
TTACCTTTTACCTAAACCAAT---------CGGTCCAGTCTTTCCACCTACAGCTCA------ACAGGTATGATTCATTC
ACAACTTTTGTCATCCTTGCGTGATACAAAAGTCTTCCAGAGTGCTCATTTGAATGGAAAGACAAATTGACAAGCTATCC
AGCATACACTAA-----------------------------ACACACCTCCTCCCCCTACTCATGAATTATACTTTTGAC
TTCTTCCAGCATCTCCCTTCCTGTAATGGCGTTCGGCTCTATTGGAACTACTATCGGTGGGACCTACCACACACTAACTC
AAAGTAAAATTGGGTTAGTCCACCAGGGCGCATTCTTACCAGTGCGCCCATGCTAAACTGACCCAGAGAGGTTTGACCTG
TTACAAAAAGATTAGGTCGGCCAGAGAAGGTCATGCCAGTGACTTGTT----AATTAGACCGGCATTGTCAATGGAAACT
CATATTAGAGGCTGTAGATGGAGGATGGCAATCAGAAGTGGACCGGTCACACCAAAGATTAAACTCCTATCCCCTC--CC
CCTCAAACTCTTCAATCATTGTCAGTAGTTCAAGTCAGGAACAACCCTCCCACCATTGGACACAATGGAATGGAACATGT
TCTAATCATGACTTGGAGTGGTAAATAATCTCTTTCCTAACATGC----------------------------CCCTTCA
GAATTTTCAGGACTCTCCTGTCGGCAGACAAGCACCTTTCGGGTTCCAAGCAACGCGGCCACCAAATACGCACCAATTCG
TACCGTACAGTACATCCCTAAGTACAATAT----------TAATATTATGTTTTGAATCATATATCCAGATTCGGTGTAC
TAGCTAAGTAATAGTAATTTTATGGTATCATGGGGTATATACCATGAATGAT----------------------------
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>chr3A_701
GCCACGTCGAGATACTCAGTAATACGATGTCACAGTACCAGAATAACACGGAGCTAATGAACAGCTTGGAGGTGAGAGCC
TCACTTGACGCACTGGACCAGATCCTTGGTGAGGCCTTGAAGCTCGTCACCGCCTGCGAGGAGACCAACTTCGTGCGCCT
TTTCTACAACTCTAGGCACCTGTCCCAACAGTTAATCCAGGTGGAACAGCGTATATCCAATAAGAACATGGACGCAGTGT
TTGCCATTATGGCCTTCCTTTTACCTAAGCCATTCAGTTTTCATCCTCCACCCTCACAGGTATGATTCATGCACAACTTT
TGTCATTCTTGCCTGAGACTACATTAAAAGTTACAATTTCACATTTCCAAGTATCTATTAGCCGGTATTGGTAAAAAGCT
TTTTTGCTAAAAGAGACCGCTCTTGTCACTCCTGCCACATGTTTATTACGATTGTCTAAGTGTTGCCAGTGTCTCTTCCA
TAATAGTTGAAGGGGATGGCCGAGACGTTACCTGGAGGAGTAGCAGAGAACGGCAAGCTACCACCCCTTTCTGGAAAACT
GTGACTGATGGTGCCGAGTGGAGAAAAGCATGGTAGTGGTGGAATGTGAAGAAAATAAATAAATGATCACTAAATGGCAA
AAGAAAAGAAAATTGCCCTGTACTGCTTACATGTTGCTCTTTTCTTGTTTGGTAGCCTTTGTGTATATGTAAGACAGCAA
ATTGCTTTTTGTCCATTCTGGATGTTTAACATGTCTTATTCAGTGACATGGACAAACTGTAGGAACATCATAACCGATGG
AGCATTATTAAAAATGATAATGGTGCTGTCGATAGCACATCATAACACGGTTTGCCAATTTTTTTAGCAAGATGTTGATC
ATGCAGTCTGTCAATTCTCATTTCCTCGAAATTCCCGGAGAAGACTCTG------GTGGAAACAAGAGTGTCATTTGTAT
CCATAACAGAATAGTTCATTAACTCGAGAAGACTTCCTGCCGAGCCAATACTGGAATCGCTCATTTGGAGG-------CT
GCAGGGA-AAGGAAAGGAGAAT----CCAAGAAGCAAGGTTAGTGCAC--AAACTGGTAATCAGCCTATTACTTCTTTTC
ATGAATTGCTCAGTT-ATTAA-----TTAGTAGTTCATTTATGTAAGTATGTA--------------ACTGAACTTGATC
TGTAGATTGAACTCTTTGACTTTCTGCCTAGGATGGTCGATGCAGTGAGCACCGTGACCAAGATTGTGGAAGTTGCGCTA
AAGATCAAGAACGCTGCGGACAAGGTGAAGCAGAACGAGTACATCTGCAAGCAAATAAAAAGCCGCGTCGAGATACTCAG
TAATACGT------------------------------------------------------------------------
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>chr3D_703
CAA-----------------------------------------------------------------------------
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------TCTGACTATTCTCATTTCTTGGAAATTTCCAGAGAAGACTCTGTCCTCGATGGAAACAAGCGTGTTATTTGTGT
CCATTAGAGATTAGCTCGTTAATTCGGGAAGGCTTGCTGCCGAGCCTGTACAGGAATCACTCGTTTACATCTGTA-----
----GGG-AAACAAAGGAGAAG----CCAAGAATCCAGGTTAGTACTCTTTAACTGTTAATCAGCTTATTAGTTCCTTCC
GTGAATTGCTCAGTTTAATACTAAATTTAGTTC---------------ATTGTACTCCGCGAC---------------TC
TATGCCTAGGATAT-----------------GATGGGTGATGCAGTGACCACCGTGACCAAGATTGTGGAAATTGTGATG
AAGATCAAGAAGGCTGCAGACATGGTGAAGCAGAATGAGGATGTCTGCAAGCAAATACAAAGCCGCGTCGAGATACTCAG
TAGTACGTTATCACAGTACCAGGATAACGAGGAGCTAATGGACAACTGGGGGGTGATGCGCACGCTTGAGGCGCTGGCCG
ATGTCCTTGGTGAGGCCTTGAAGCTCGTCACGGACTGCCAGGAGGCGGACACCAACTTCGTGTGCCTTTTCTACAACGCT
GGGAACCTGTCCCAAGAGTTAATCAAGGTGGAGCAGCGTATATCCAATAAGAACATGGACGCGATGTTTGCCATCATGGC
CTTCCTTTTACCGAAACCAACTACGCCAAGCAGTG------TTCGTCCTACAGCCCAAGAGCGACAGGTATGATTTATTC
AGAACATTTGTCAT------------------------------------------------------------------
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>chr3B_896
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------------------------------------AGGTTAGTGCTC--AAACTGTTAATCAGCTTATTACTCCTTTTT
GTGAATTGCTCCTTTTATTAG-----TT-----------------------TA--------------ACTGAACTTGGTC
TGCAGATTGTACTCTGTGTCTCTCTGTGTAGGATGGTCGATACAGTGGGCACGGTGACCAAGATTGTGGAAGTTGCGCTA
AAGATCAAGAACGCTGCAGACAAGGTGAAGCAGAACGAGCATATCTGCAAGCAAATAAAAAGTCGCGTCGAGGTACTCAG
TAATACGATGTCGCAGTACCAGAATAACACGGAGCTAATGAACAGCTTGGAGGTGAGAGCCGCACTTGAGGCGTTGGACC
AGATCCTTGGTGAGGCCTTGAAGCTCGTCACCGATTGCCAGGAG------ACCAACGTTGTGCGCCTTTTCTACAACTCT
AGGCACCTGTCCCAACAGTTGATCCAGGTGGAACAACGTATATCCAATAAGAACATGGACGCTATGTTTGCCATCATGGC
CTTCCTTTTACCTAAGCCATT---------CAGTT------TTCATCCTCCACCCTC------ACAGGTATGATCCATGC
ACAACTTTTGTCATTCTTGCATGATAC-----------------------------------------------------
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>SNPs
--SSSSSSSS-SS--SS-SSSSSS---SSSS-S-SS-S-SSSS-SSSSSS-SSS-SSSS-SS-SS-SSSSSS-S-S-SSS
-S-S-S--S-SS-S-S----S-SSSS-SS-S-SSSSSSSSSS-SSS-S-SSS-SS-SS-SS-SSS-SSSSSSS-SSSSSS
S-SSS-S-SS---SSSS-SSSSS-SS-SS-SSS--SSSSSS-SS-SSSS-S---SSSS-SSSSSS--SSSSSSSSS--S-
SSSSSSS-S-SSSSSSSSS-SSSS-SSSSSSS-SSSSSSS-SSSS-SSSSSSSSSSSSSS-SSSSSSSSSS--SS-S-S-
SS-SS-SSS-SSSSS----S-SSS-SS-SSSSSSSSSSSSSSSSS-SSSSS-SSSSSSSSSS-SS-SS-SSSSSS--SSS
S-SSSS--SSSS-SSSSSSSSS-SSSSSSSS-SS----S-S---S-SS-SSSS-SSSSSSSSS-SSSSSS-SSSSSSSSS
S-SSSSS-SS-SSSSSSSSSSSSS-SSSSSSS--SS--S-SS-SSS---SSSSS-S-S-SSSSSSSSSSSS-SS----SS
SSSSSSSSSSSSSSSS-S---SSS-SSSS-SSSSS--S-SSSSS-S-SSSSS-SSSSSSSSSS-SSSSSSSSSS-SSSSS
SSSSSSS--SSSSSS-SSSSSSSS-SSSSSS-SSSS--SSS-SSS-SS--SS-SS-S-S---------------------
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-----------------S-S------S--S-S-------------S-----S-------S-S------------S-----
---S----------------S-----------------S-------S-------------------S---S----SS-S-
-------S--------------SSSS-------SS------------S--S-----------S-----------S-----
-------S--------------------------------------------S-----------------SS--------
----------S-S-S-----------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------------S-------------S-------------------------------------------------
------------------------------------------------------------S-------S------SS--S
-----------------------S--------------------------------------------------------
------------------------------S---------SS-SS-----------------------------------
---------------------------S--S--------------------------S--------------S-------
-SSSS--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S-------------------
-------------------------------------S-----------S------S----------------------S
SSSSS------------------------------------------------------------S-----------S--
--------S-S-----------------------S----------S--SSSS--------S---------S---------
------------------SS--------------------------------S---------S------S----SSSS--
----------------S----------S---------------S----S---S-----------------S--S--S---
--------------------------------------SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
------------S-S--S--------S------S------SS----SS--------SS-------------S----SSS-
----S-------------------------SSSSSSSSSS------------------------------------S---
--SS-S-------------S--------S----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_466
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----------------------------------------------CTCTGCAGGACCCAGTCTTG--------------
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>reverse_1779
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------------------ACCAATGTCCAGGCTTCCAG------------------------------------------
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