>input_sequence_80654
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-----------------------------------------------------------------------------ATG
GCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCTTCCTGTCCTTCGTCCTCGCCTCATCCGCGGCTGC
GAGCTACCCAGAGCACCCAGGCCAGGGCGCCGGGGGATTCTTCAGCGGCATACCGTGGTTCCGCGGCGGCCAGCCGGGTG
GCGCTCGAGGTGCCGGAGGCATGGGCGCCGGGTTCAGTGGCGGGTGGGGCGCCGGCGGCGTTGGGCCAGGGGGAGGGTTC
GCGCGGCGCGGGATCGTGCAGCCGTCCGTGGTCTGCGCCGAGCAGGGTCCCTGTTACCAGCAGCGGCTCACATGCCCGTC
CAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGAGGAGGTGGTGGCGGCGGTGGGTGCAGCTTCGACTGCA
CCAGCTGCGAGGCCCACTGCTGA---------------------------------------------------------
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>chr2D_1_TraesCS2D01G257100
GAAAAGTCAAACCTCAGAAACTTTGATCAAATTTGTGAAGAGAAACTTTTTACGTCTAGAATGCCAAACATATATCATTA
GATTCACTATAAGATGTAGTTTCATACTTTATATTTTTTATATTATAGATATAAATAGTTTTCTCTACAATGGTTAAAGT
T----------------TTTTAAAAAAAATCTATACACACTACATTATGTAATGAAGGGAGTAACATTTTCAGAGTATTG
ATTTTTC------TTTTACCACGCCTTCTAGGAATGTTATTTCATAATAAAATTTTAGAAGCTCCTAGTACATTTGTCAA
AAAAATCTGATTGTTTCTAAATATTTTTTGG-TTTACTGTTCACCG-AGCTCGTTGGACTCGGGCTGAGAAACTCCACTT
CCAACCGAGCACCAGATATTCTCCCGCTAGCGTAGATAACCACGGCAATTAACAACGCGGTGCCTCGATAACAGTGCTAG
TTACGTAACCTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGATGGATCGACATCAGTAGAG
CATCAGATATGCGCACTGAGAGTGCGTACGAGCTGGTGGTGACACTGACACGTACACCTACGCTTCAGCTCAGACGCACT
CACCTAAAGCTAAACCGGCAACCACATGGAATCGCGCCACGCACACGCGCAGCACCGCCCCCCTCACC-----ACCTTTC
TTCCTTCCCCGCCCACTTTCCTTTTCCCCGCGATGGAGTCG--------CCGCGCCCAAAGTCATAAATACCTACCTCCT
CCGCACCAATCTTTGTCCACTCCTCCCAAGTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACACAAAGCTAGGACCATG
GCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCTTCCTGTCCTTCGTCCTCGCCTCATCCGCGGCTGC
GAGCTACCCAGAGCACCCAGGCCAGGGCGCCGGGGGATTCTTCAGCGGCATACCGTGGTTCCGCGGCGGCCAGCCGGGTG
GCGCTCGAGGTGCCGGAGGCATGGGCGCCGGGTTCAGTGGCGGGTGGGGCGCCGGCGGCGTTGGGCCAGGGGGAGGGTTC
GCGCGGCGCGGGATCGTGCAGCCGTCCGTGGTCTGCGCCGAGCAGGGTCCCTGTTACCAGCAGCGGCTCACATGCCCGTC
CAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGAGGAGGTGGTGGCGGCGGTGGGTGCAGCTTCGACTGCA
CCAGCTGCGAGGCCCACTGCTGATCCAACCAACC----AACCTACGGCGGGGGAGATGGGTGACTGGAGACGGATCGCTG
CACACTCACATACACATCCAGGACGAGACTGCCATGAACTGATGAATTAAGCCCACTAGTTGTACTTGTAGCAGCAGTAG
TATCCTATTCCCTATGCATGATGTGAGAGCATAGGGTACGTGTGTGTATCTATGAATAAAAATGGATGTAATAAACTGAG
CGATGGTTTTGAGGCTTTGAGCGTGCATATGGTGGTGACCATGTTATA---ACTGTTTGTGATGAATGGTTTTCGCCTCA
TGTCGTGTTCAG--------------------------------------------------------------------
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-----------------------------------------AACACAGTAGCGC--------------------------
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----------------------------------------------------------------TATACAGATAATAATA
AAAACACAGTAGCGC-----------------------------------------------------------------
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-------------------------------------------------------------------------TATACGT
ACACACTTGCTCGCGAGAGATAAAGCCTCGGGAGCCTCTAACTGA-----------AAAAAAAGATTGATAAATCACTTC
TTATATGAACCGTCCGATCTTTATTCAACCGC------------------------------ACCTCCCTTCCTTCTTCC
TCCTCCCGACCCCCAGCCTACCCCATCCCATGC-----------------------------------------------
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-----------------GTCGGCCTCCACCCCCGCGGCCGGCCGGCAGTACCGTGCGCCACCTCGCCGCACGGCCCTCCC
CACGACCATCCCCCCTCCCCCTCCCCTCCCCGGCTGTTGCTGGCAGCCGCCCCAGCCATCCCTCTAAGCCCCGCTGCATC
AATGAAGAACTCCAGAGATCCCCTGCACCCCCTCCACCCACATGTAAAATAGATAATGGGGTCATTACTTCACCCGAAGG
TAGATGGTGGGGCTGCCTCTTCTTAGGCGAGCTTATTTCTTCTCCGACGAGGTCCGGCTAACAGGGAAGGAAAAAGGAAA
GAAGTGACTGAAGCGGAAAAAAAATCAGGCATCTGAGAGAATAGCAAATCCATAAAACCTCACGTTTGGTCTCACTGATG
GCGGTGGGTATTGTGCACTTTTGTTGGAAGTGGGATAATAGCGGTCTCCAGAGAAGAGATTATAGAAAAAGAAGAACGAA
AGAACAAAATGTAATTCTGGAATCAAAGTGAC
>chr2A_1
GAAAAGTCAAACCTCAGAAACTTTGATTAAATTTGTGGAGAGAAACA-TTTAAGTCTAGAATGCTAAACCAATATCATTA
GATTCATTATAAGATGTAATTTCATAGTTTATATTTTTGGTATTTTAGATATAAATAGTTTTTTCTATAAATTTTGTTAA
GGTTCATAAAGTTTGACTTTTAAAAGAAATATATACGCACTACATTATGGGATGAAGGGAGTAGCATTTTCAAAGTATCA
ATTTTCTTTTTCTTTTTACCATGCCTTCTAGAAATGTTATTCCATAATGAAAATTTGCAAGTTCCTAGTACATCCGTAAA
AAAACATTTTTTCATCT--------------TTTTACTGTTCACCGTAGCTCATTTGACTCGGGCTGAGAAACTCCACTT
CCAACCGAGCACCAGATATTCTCCCGCTAGCTTAGATAGCCACGGCAATTAACAACGCGGTGCCTCGATAACAGTGGTAG
TTA-GTAACCTGCAAAGAAAAAAA--------------------------------------------------------
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---------------------------------------------------------CGGATGGATCGACATCAGTTGAG
CACCAGATAAGCGCACCGAGAGTGCGTGCGAGCTGGTGGTGACACTGACACGTACACCTACGCTTCAGCTCAGACGCACT
CACCTAAAGCTAAACCAGCAACCACATGGAATCCCGCCACGCACACGCGCAGCACCGCCCC-----CCTCACTACCTTTC
TTCCTTCCCCGCCCACTTTCCTTTTCCCCGCGATGGAGTCGCCGCGCGCCCGCGCCCAAAGTCATAAATACCCACCTCCT
CCGAACCAATCTTTGTCCACTACTCCCAAGTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACACAAAGCTAGGACCATG
GCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCCTCCTGTCCTTCGTCCTCGCCTCCTCCGCGGACGG
GAGCTACCCGGAGCACCCCAGCCCGGGCGCCGGGGGATTCTTCAGTGGCATACCGTGGTTCCGCGGCGGACAGCCGAGTG
GCGCCCGAGGTGCCGGAGGCATGGGCGCCGGGTTCGGTGGCGGGTGGGGCGCCGGCGGCGTTGGGCCAGGGGGCGGGTTC
GCGCGGCGCGGGGTGGTGCAGCCGTCGGTGGTCTGCGCCGAGCAGGGTCCCTGCTACCAGCAGCGGCTCACATGCCCGTC
CAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGGGGAGGTGGTGGCGGCGGTGGGTGCAGCTTCGACTGCA
CCAGCTGCGAGGCCCACTGCTGATCCAACCAACCAACCTACCTACGGCGGGGGAGATGGGTGACTGGAGATGGATCGCT-
-GCACTCACACACACATCCAGGACGAGACTGCCATGAACTGATAAATTAAGGCCACTAGTT-------------------
-----------------------------------GTACGTGTGTGTATCTATGAATAAAAATGGATGTAATAAACTGAG
CGACGGTTTTGAGGATTTGAGCGTGCATATGGTGTTGACCATGTTATA---ACTGTTTGTGATGAACG----TCGCCTCA
TGTCGTGTTCGAA-------------------------------------------------------------------
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>chr2B_297
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------------------------------------------------------------------------------AA
AAAAATCATATTGTTTCTAAATATTTTTTGGTTTTACTGTTCACCG-AGCTCGTTTGACTCGGGCTGAGAAACTCCACTT
CCAACCGAGCACCAGATATTCTCCCGCTAGCGTAGATAACGACGGCAATTAACAACGCGGTTCCTCGATAACAGTGGTAG
TTACGTAACCTGCAAAAAAAAAAA--------------------------------------------------------
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---------------------------------------------------------CGAATGGATCGACATCAGTAGAG
CATCAGATATGCGCACTGAGAGTGCGTACGAGCTGGTGGTGACACTGACACGTACACCTACGCTTCAGCTCAGACGCACT
CACCTAAAGCTAAACCAGCAACCACATGGAATCGCGCCACGCACACGCGCAGCACCGCCCC-----CC-----ACCTTTC
TTCCTTCCCCGCCCACTTTCCTTTTCCCCGCGATGGAGTCG--------CCGCGCCCAAAGTCATAAATACCCACCTCCT
CCGCACCAATCTTTGTCCACTCCTCCCAAGTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACACAAAGCTAGGACCATG
GCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCCTCCTGTCCTTCGTCCTCTCCTCCTCCGCGGACGG
GAGCTACCCGGAGCGCCCCGGCCAGGGCGCCGGGGGATTCTTCAGCGGCATACCGTGGTTCCGCGGCGGCCAGCCAGGTG
GCGCCCGAGGTGCTGGAGGCATGGGCGCTGGGTTCGGTGGCGGGTGGGGCGCCGGCGGCGTTGGGCCAGGGGGCGGTTTC
GCCCGGCGCGGGGTGGTGCAGCCGTCGGTGGTCTGCGCCGAGCAGGGTCCCTGCTACCAGCAGCGGCTCACATGCCCGTC
CAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGAGGAGGTGGTGGCGGCGGTGGGTGCAGCTTCGACTGCA
CCAGCTGCAAGGCCCACTGCTGATCGATCCAACCAACCAACCTACGGCGGGGGAGATGGGGGACTGGAGATGGATCGCTG
CGCACTCACATACACATCCAGGACGAGACGGCCATGAACTGATGAATTAAGCCCATTAGTTGTACTTGTAGCAGCAGGAG
TATCCTATTCCCTATGCATGATGTGAGAGCATAGGGTACGTGTGTGTATCTATGAATAAAAATGGATGTAATAAACTGAG
CGATGGTTTTGAGGCTTTGAGCGTGCATATGGTGTTGACCATGTTATAGTAACTGTTTGTGATGAATGGTTTTCGCCTCA
TATCGTGTTCAGAACGGGACAGGCTACTGATTTTGGTTTTTCGGCCAGTCCACTGTCCAAAAACTTCTGTCAGTCGATTC
GCTGCTCACTTCAAGCTTCCTACTCAAGCGTTGTATAGCTGCTCACTACACCTCACTTCATCACCTATAAGGAATTTTTT
TTATGTGAAAGTAATGGATGGGCTTATCCGTGAATTGAACTAGCACACATACATGTCAAACGTGTGGAGTAGAATACCCG
GCTAGGGATATCTGCTAAAGCTGGATAAGATTTTAACATGTTAATTCGTTAGTTTCAGTTCCCCGAAAAGAAAGAAAAAA
TATTTAGTTTGAGCGCATGCATGTATTTATTTCTTCCTGCGTTTGTATGAACTACCTAATTCCTTTTTATGAAAACTGTG
TATACCTAATCATATTCTCACGGTGGCAATCATACGTATGTAACATAATCTAATTCTCGTGTTTAAGGTTTCAAGCGGTA
ATCATGCACGTCCCTATTCGAATCGAGGCTAAAAATAAGAGTTTCTAAGAGAAAAATGAATTAGTGACAATGATACTACC
CTTTAAGAAGTAAATAAAAAAATGACAAAATTGGTACGCAATTTACACATAAATTATAACTTTTTATAATATGCAAGAGC
AAGAATACACCAGAGTTTTTTCGCCAAAAATAAGTTTTACCAGAAGGAATGAATTAGTCGCCCTGGTTTTACCCTTATAG
AAGAGAGGAATATTGAAGTTTCTAAGAAAGAAAAAACTAGTGCCGTTGGTATTACCCTTCAAGAGGAAAGAAATGTAAGA
ATGACAAAATTTGCACACAATTTACACATAAATCGTATTTTTATAATATGGAAGAATAAGAAATTAATAGTGGAATTTCA
CAAAAAAAATCCTCAGAACGACTAATTTAGTAGCATTGGTATTACCCCTAAAGAAGAAAGAAAATGAAACAAAACTAAGC
ATCAAAATAATGACATTTTCTAATAAAGAATAAATTAGTGGCATTGGCATTACCCTTTAAGAAAAAAAAACTAAAATAGA
ATGAACCCTTTAAGAGTAAAAAAAATTGAAAAATATATCAAATACTGGCAAAAATTGCGCACAACTTACGTAGAACTTGC
TCCTTTTTATAATATGCAAGAATAATCACATATAGTGGAATTTCGCAAAAAAATATTCCTAAAAAGGAATGATTTAGTGA
CATTAGTATTCCCTTAAAAGAAAGAAAATGAAACGAAATCTAAAAAAATCAAAATTATCAAGCTTTCTAAGAAAGAATAA
ATTAGTGGTATTGGTATTACCCTTTAAGAAAGAAGAAAATGAAATAAAAACTAAAACTGAATCAAAATAATAAAGTTTCT
AAGAAGAATGAATTAGTGGCATTGGTATTGCCCATTAAGAGTAAAAAATAAAGTAAAAAATAAATAATGGCAAAATTTGC
ACACAGTTTGCACATAAATTGCGTTTTTATAATATGCAAGAATAAAGATATAATAGTAAAATTTCAAAAAAACCTAAAAA
GGAATGAATTGGTGGCATTGGTATTATCAAAAAGATGAAACTAAAACTAAAACAAAATCAAAATAATGAAATTTTCTAAG
AAAGTATGAATTAGTGGCATTAGTATTACTCTGCAAAAAAAGTAAAATTATTAAGCATAATGACAAAAATCTGCACACAA
TATACAAAGAAATTATGCTTTTCTATAATATGCAAGAATAAACATACAATAGTGGGATTTCAAAAAAAAAGTTACTAAGA
AGGAATGAATAGTGACATTGATACCCCCAAGCCCATGCAGAGGTCGGACACATGCAGACCATTGCTGCAGCAATACAACC
ATCGACGGCAACATCGGATATGTGGCACTACATCTGGGGCAAAACGAGTTTCAAGTCTACGGATTACTACCGTTTCTTCT
TCAGGGCCGTTCACTCCCACCAAGCCTTCGGTTGGATCTAGAAATCAAAATGCACGATGAAACTAAAAGTGATTGCTTGA
CTGCTATTTCACGATAGGCTCAACATGCGCAATATGCTCAAAAGAAGGCACTACAACATTGGAGATTATCACAATTGCCT
CCTCTGCGGCTAGAACATCGAGGAAACTGTTGAACATATGACCTTCACCTGCTCCTTCAACAAACAATGTTGGGACAAAC
TTGAAATATCAACTAGGAGCCCTTCCCCGGTCGTCTGCAAGCTATTGAGGATAAAACAAATGGCCATCCATCACCTTTGT
TCTTAGAAAAAAATCATCGTGGTGGCATGGAGCATCTGGAAGGAGAGGAACAATAAACATTTTAGAGTTATAGCCCCCTC
ATTTCGGTCCTGGCTTGACAGATTCAAGAGGGACTTTTAGCTACTTCAGGGTTAAAGAGGCACATAGGCCTTTGGTTCTT
AACTTTGTAAGCTCTCTTTATTAGTCCACCTAGTTAGCATCCTTCTTTCTTGCCACAAAGTGGCTAAGACACCCACCATG
TAAATACTCCATTGTATAGTGTACTATTTTATTAATATAGTAACACAGTAGGAGCCTTTCCTACAGTTCACGGTCAAAAA
AATAGTAACATTGATATTACCCTTAAAGAAGGAAAAAACAATCTTTTCTAAGCTAGAATGAATTAGTGCCATTGGTATTA
TTACCCTCTAAGAGAGAAAATGAAAAAAAAACTTTAAAAAGCTTGCACACAACTTTGCACTTTTTAAATATGTAAAAATA
AACATATAATAGTGCAATTTTCGCACTTTAGTATAATTTATCCAAATGTTATATATTACTTACATGTATACATTTTGCAC
TCACCCAACATCCACAAATCCCCATAAAAATTTGACTAAAAAGGCAAAAATGCAGACAAGCAAAAAATGGGGAAGCACTC
TAGGCCTATAAAGAGGCAACATGAGATGGGCTTCAGCCCAATAAGAAATCGACTGGCCCAAGAAAGTGGCCAGTCAAAAA
ACTGGGCCCAAAACAAGACAGCAATCATAGCAGAGAAAATAAGAAGAAGCACGAATCTTGAAGCAGAAATTAATGGCCCA
AAAAATCGACTGACCCAAATAGAATTTTCGGGCAACTTGCATATAACTAAATTGGTTCAGAACACGGTAAAGATATACAT
ACACGCTTGTTTGCTAAAGATAAAACCTCGGAGCCTCTATTATCAGGTAACTAAAGAAAAAAAGATTCATCAATCACTTT
TTATATGAATCGTTCGATCTTCATTCAACTGCCCAAAACAGATCTAGCACTGTTCATTTTCAACCTCCCTTCCTTCGTCC
TCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGTCAGCCTCCACCCCCATGGCCGGCGCATGCTACCCCGCGTTGCTTCGCTGCACGATCCTCCC
CTCGACCTCCCCCCACT---------------GCCTTTGTTGGTCGTCGCCCCGTCTATCCCTCTAAACCCGA-TGCATC
AATGGAGAACTCCGCCGATCCTCTGCGCCCTCTCCCCCCACATGTAAAATAAATAATGGGGTCATTGCTTCACCCAAAGG
TAGATGGTGGGGCTGCCTCTTCTTAGGCGAGCTTATTTCTTCTCCGGCGAGGTCCGGCCAATAGGGAACGTAAAA-----
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>SNPs
---------------------------S---------S--------SS----S-----------S----SS---------
------S-----------S-------S-----------SS----S-----------------S----S--SSS--SSSSS
S------------------------S----S-----S------------SS------------S--------S-----SS
-----SS--------------S---------S---------S------S---S---SS---S-----------SS--S--
--------S----------------------------------------------S------------------------
----------------------------------------------------------------------------S---
---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
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----------------S--------------------------------------------SSSSS--------------
------------------------------------------------------------------------S-------
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---------------------------------------------S----------------------S-------SS-S
---------S--------S-------------------------------------------------------------
----S------------------------------S-------------------------------------S------
------------S-S-----------S--------------------------S--------------------------
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----------------------------------------------------------------------S---------
-S---------------------------------------------------------------------------S--
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---------------------------------------------------SSS--------------------------
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------------------------------------------------------------------S-S-SS---S----
--S-S-S-S---S-------------------------------------------------------------------
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------------------------------------------------------------------------------S-
----S----S-S--S-S-------S------SSS-SSSSSSS-S-----------------------S--S--------S
---------S---S-------S-------S----------------------------------------------S---
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------
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--------------------S------------SS-------SSSSSS----SS---SSS-S----S-----SS------
-S-----SS-----SSSSSSSSSSSSSSSSSS--SS---S---SS-S------SS-S----------S---SSS------
----S--------SSS-----S----S---S----S---------------S--------------S--------S----
----------------------------------------------S-----------S--S------S-S----SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_376
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------------------------------------ACTGTTCACCGAGCTCGTTG------------------------
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>reverse_5673
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------------------------------------------------------------------------CACTGATG
GCGGTGGGTATT--------------------------------------------------------------------
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