>input_sequence_80651
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------------ATGGCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCCTCCTGTCCTTCGTCCTCTC
CTCCTCCGCGGACGGGAGCTACCCGGAGCGCCCCGGCCAGGGCGCCGGGGGATTCTTCAGCGGCATACCGTGGTTCCGCG
GCGGCCAGCCAGGTGGCGCCCGAGGTGCTGGAGGCATGGGCGCTGGGTTCGGTGGCGGGTGGGGCGCCGGCGGCGTTGGG
CCAGGGGGCGGTTTCGCCCGGCGCGGGGTGGTGCAGCCGTCGGTGGTCTGCGCCGAGCAGGGTCCCTGCTACCAGCAGCG
GCTCACATGCCCGTCCAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGAGGAGGTGGTGGCGGCGGTGGGT
GCAGCTTCGACTGCACCAGCTGCAAGGCCCACTGCTGA------------------------------------------
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>chr2B_1_TraesCS2B01G275500
CACCTGTTCTGGGAATGCACCGTGACCATTCAGTGCTGGAACGAGATGGCAACCTGGCTAGGATGCCACTCTTTCAGTCA
TTCCGTCTGGAGCGCGGGAAGGTCCACGGCCGAAAGGGTTCGCCGGATCATCGATGGAGCCAACCCTGGCACGAGGAAGG
GCACCAGATCGCTGCTCACCCTGATGATCTGGCAAATATGGTTAGAGCGGAATGCGTGCACCTTCAAAGGGAAATCACCA
TGTGCCAGCAGCATCATAGCGGCAATGCCGCCGTGACATGGAACAATGGAGGATCGCCGGAGCTAAATGCATAGCGCACC
CCTTCGGGGACGTGCCGTGAGAATAACAACTTTAGGCCCCTCTAGCCAGCTTACATTCTTGCTAGGCTGGCTATGTAACC
TCTTCTTCAACCCATCGATCACTTGATCAGACTATGTATTTTTCCCGCTCTCTCCTGCTATGAAATGAAAGCCAGAAATG
GTCACTTTTTCAAAAAAAAATCATATTGTTTCTAAATATTTTTTGGTTTTACTGTTCACCG-AGCTCGTTTGACTCGGGC
TGAGAAACTCCACTTCCAACCGAGCACCAGATATTCTCCCGCTAGCGTAGATAACGACGGCAATTAACAACGCGGTTCCT
CGATAACAGTGGTAGTTACGTAACCTGCAAAAAAAAAAA-----------------------------------------
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------------------------------------------------------------------------CGAATGGA
TCGACATCAGTAGAGCATCAGATATGCGCACTGAGAGTGCGTACGAGCTGGTGGTGACACTGACACGTACACCTACGCTT
CAGCTCAGACGCACTCACCTAAAGCTAAACCAGCAACCACATGGAATCGCGCCACGCACACGCGCAGCACCGCCCC----
-CC-----ACCTTTCTTCCTTCCCCGCCCACTTTCCTTTTCCCCGCGATGGAGTCG--------CCGCGCCCAAAGTCAT
AAATACCCACCTCCTCCGCACCAATCTTTGTCCACTCCTCCCAAGTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACAC
AAAGCTAGGACCATGGCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCCTCCTGTCCTTCGTCCTCTC
CTCCTCCGCGGACGGGAGCTACCCGGAGCGCCCCGGCCAGGGCGCCGGGGGATTCTTCAGCGGCATACCGTGGTTCCGCG
GCGGCCAGCCAGGTGGCGCCCGAGGTGCTGGAGGCATGGGCGCTGGGTTCGGTGGCGGGTGGGGCGCCGGCGGCGTTGGG
CCAGGGGGCGGTTTCGCCCGGCGCGGGGTGGTGCAGCCGTCGGTGGTCTGCGCCGAGCAGGGTCCCTGCTACCAGCAGCG
GCTCACATGCCCGTCCAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGAGGAGGTGGTGGCGGCGGTGGGT
GCAGCTTCGACTGCACCAGCTGCAAGGCCCACTGCTGATCGATCCAACCAACCAACCTAC----GGCGGGGGAGATGGGG
GACTGGAGATGGATCGCTGCGCACTCACATACACATCCAGGACGAGACGGCCATGAACTGATGAATTAAGCCCATTAGTT
GTACTTGTAGCAGCAGGAGTATCCTATTCCCTATGCATGATGTGAGAGCATAGGGTACGTGTGTGTATCTATGAATAAAA
ATGGATGTAATAAACTGAGCGATGGTTTTGAGGCTTTGAGCGTGCATATGGTGTTGACCATGTTATAGTAACTGTTTGTG
ATGAATGGTTTTCGCCTCATATCGTGTTCAGAACGGGACAGGCTACTGATTTTGGTTTTTCGGCCAGTCCACTGTCCAAA
AACTTCTGTCAGTCGATTCGCTGCTCACTTCAAGCTTCCTACTCAAGCGTTGTATAGCTGCTCACTACACCTCACTTCAT
CACCTATAAGGAATTTTTTTTATGTGAAAGTAATGGATGGGCTTATCCGTGAATTGAACTAGCACACATACATGTCAAAC
GTGTGGAGTAGAATACCCGGCTAGGGATATCTGCTAAAGCTGGATAAGATTTTAACATGTTAATTCGTTAGTTTCAGTTC
CCCGAAAAGAAAGAAAAAATATTTAGTTTGAGCGCATGCATGTATTTATTTCTTCCTGCGTTTGTATGAACTACCTAATT
CCTTTTTATGAAAACTGTGTATACCTAATCATATTCTCACGGTGGCAATCATACGTATGTAACATAATCTAATTCTCGTG
TTTAAGGTTTCAAGCGGTAATCATGCACGTCCCTATTCGAATCGAGGCTAAAAATAAG---AGTTTCTAAGAGAAAAATG
AATTAGTGACAATGATACTACCCTTTAAGAAGTAAAT--AAAAAAATGACAAAATTGGTACGCAATTTACACATAAATTA
TAACTTTTTATAATATGCAAGAGCAAGAATACACCAGAGTTTTTTCGCCAAAAATAAGTTTTACCAGAAGGAATGAATTA
GTCGCCC
>chr2D_494
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-------------AAAAAAATCTGATTGTTTCTAAATATTTTTTGG-TTTACTGTTCACCG-AGCTCGTTGGACTCGGGC
TGAGAAACTCCACTTCCAACCGAGCACCAGATATTCTCCCGCTAGCGTAGATAACCACGGCAATTAACAACGCGGTGCCT
CGATAACAGTGCTAGTTACGTAACCTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGATGGA
TCGACATCAGTAGAGCATCAGATATGCGCACTGAGAGTGCGTACGAGCTGGTGGTGACACTGACACGTACACCTACGCTT
CAGCTCAGACGCACTCACCTAAAGCTAAACCGGCAACCACATGGAATCGCGCCACGCACACGCGCAGCACCGCCCCCCTC
ACC-----ACCTTTCTTCCTTCCCCGCCCACTTTCCTTTTCCCCGCGATGGAGTCG--------CCGCGCCCAAAGTCAT
AAATACCTACCTCCTCCGCACCAATCTTTGTCCACTCCTCCCAAGTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACAC
AAAGCTAGGACCATGGCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCTTCCTGTCCTTCGTCCTCGC
CTCATCCGCGGCTGCGAGCTACCCAGAGCACCCAGGCCAGGGCGCCGGGGGATTCTTCAGCGGCATACCGTGGTTCCGCG
GCGGCCAGCCGGGTGGCGCTCGAGGTGCCGGAGGCATGGGCGCCGGGTTCAGTGGCGGGTGGGGCGCCGGCGGCGTTGGG
CCAGGGGGAGGGTTCGCGCGGCGCGGGATCGTGCAGCCGTCCGTGGTCTGCGCCGAGCAGGGTCCCTGTTACCAGCAGCG
GCTCACATGCCCGTCCAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGAGGAGGTGGTGGCGGCGGTGGGT
GCAGCTTCGACTGCACCAGCTGCGAGGCCCACTGCTGATC----CAACCAACCAACCTAC----GGCGGGGGAGATGGGT
GACTGGAGACGGATCGCTGCACACTCACATACACATCCAGGACGAGACTGCCATGAACTGATGAATTAAGCCCACTAGTT
GTACTTGTAGCAGCAGTAGTATCCTATTCCCTATGCATGATGTGAGAGCATAGGGTACGTGTGTGTATCTATGAATAAAA
ATGGATGTAATAAACTGAGCGATGGTTTTGAGGCTTTGAGCGTGCATATGGTGGTGACCATGTTATA---ACTGTTTGTG
ATGAATGGTTTTCGCCTCATGTCGTGTTCAGAAC----------------------------------------------
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>chr2A_527
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----------------------------------------------TTTTACTGTTCACCGTAGCTCATTTGACTCGGGC
TGAGAAACTCCACTTCCAACCGAGCACCAGATATTCTCCCGCTAGCTTAGATAGCCACGGCAATTAACAACGCGGTGCCT
CGATAACAGTGGTAGTTA-GTAACCTGCAAAGAAAAAAA-----------------------------------------
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------------------------------------------------------------------------CGGATGGA
TCGACATCAGTTGAGCACCAGATAAGCGCACCGAGAGTGCGTGCGAGCTGGTGGTGACACTGACACGTACACCTACGCTT
CAGCTCAGACGCACTCACCTAAAGCTAAACCAGCAACCACATGGAATCCCGCCACGCACACGCGCAGCACCGCCCC----
-CCTCACTACCTTTCTTCCTTCCCCGCCCACTTTCCTTTTCCCCGCGATGGAGTCGCCGCGCGCCCGCGCCCAAAGTCAT
AAATACCCACCTCCTCCGAACCAATCTTTGTCCACTACTCCCAAGTTCCAAGAATCCTCCTCGCTTTCCCCGACGCACAC
AAAGCTAGGACCATGGCGCCAGCCGGAGGACGCACTACCCATCTCCTCCTGCTCGCCCTCCTCCTGTCCTTCGTCCTCGC
CTCCTCCGCGGACGGGAGCTACCCGGAGCACCCCAGCCCGGGCGCCGGGGGATTCTTCAGTGGCATACCGTGGTTCCGCG
GCGGACAGCCGAGTGGCGCCCGAGGTGCCGGAGGCATGGGCGCCGGGTTCGGTGGCGGGTGGGGCGCCGGCGGCGTTGGG
CCAGGGGGCGGGTTCGCGCGGCGCGGGGTGGTGCAGCCGTCGGTGGTCTGCGCCGAGCAGGGTCCCTGCTACCAGCAGCG
GCTCACATGCCCGTCCAAGTGCTTCAGCTCGTACAGCTACCATGGGAAAAATGGCGGGGGAGGTGGTGGCGGCGGTGGGT
GCAGCTTCGACTGCACCAGCTGCGAGGCCCACTGCTGATC----CAACCAACCAACCTACCTACGGCGGGGGAGATGGGT
GACTGGAGATGGATCGCTGC--ACTCACACACACATCCAGGACGAGACTGCCATGAACTGATAAATTAAGGCCACTAGTT
------------------------------------------------------GTACGTGTGTGTATCTATGAATAAAA
ATGGATGTAATAAACTGAGCGACGGTTTTGAGGATTTGAGCGTGCATATGGTGTTGACCATGTTATA---ACTGTTTGTG
ATGAACG----TCGCCTCATGTCGTGTTCGAA------------------------------------------------
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>chr7A_1856
TCACTACA------------------------------------------------------------------------
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------------------------------------------------------------------------------AT
CACCTATAAGGAATTTTTTT-ATGTGAAAGTAATGGATGGGCTTATTCGTGAATTGAACTAGCACACATACATGTCAAAC
GTGTGGAGTAGAATACCTGGCTAGGGATATCTGCTAAAGCTGGATAATATTTTAACACGTTAATTCGTTAGTTTTAG---
--------------------------------CGCATGCATGTATTTATTTCTTCCTGCGTTTGCATGAACTACCTTTTC
TGTG----TGAAAACTGCGTGTACCTAATCATATTCTCATGGTGGCAATCATACGTACGTAACGTGATCTAATTCTCGTG
TTTAAGATTTCAAGTGGTAATCATGCACGTCCCTATTC-AATCAACGCTAAAAATAAAAGAAGTTTCTAAGA-AAAAATG
AATTAGTGACAATGATACTACCCTTTAAAAAGAAAATAAAAAATAATGACAAAATTGGTATGCA----ACACATAAATTA
CAACTTTTTATAATATGCAAGAACAAGAATACAATAGAGTTTTT-CGCCAAAAAGAAGTTTTATTAGAAGGAATGAATTA
GTCGCC-
>SNPs
SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS---------SS--------------------------------------------------------
-------------------------------------------------------S--------------------S---
-------------------------------S------------------------------------------------
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--------------------------------------------------------------------------S-----
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------------------------------------------------------------------------------S-
-----------------------------S--------------------------------------------------
----------S-----------------S--------------S------------------------------------
-----------S-----S--------------------------------------------------------------
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-----------------------S----------------SSSS-----------------------------------S
--------------------S---------------------------S-------------------------S-----
----------------S---------------------------------------------------------------
-------------------------------------------------------------------SSS----------
--------------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------S-------------------------S---------------------------------
-----------------S-----------------------------S---------S----------------S--SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S-----------SS-S
SS-SSSSS---------S--S------------------S-----------------S-----S-S--------------
------S-------S-----------------------S----S-S-----------S--------------S-------
----------------------------S---S----------S----------------S---SSSS------------
S---------------------S----------SS---------S---------S--------SS---------------
------S
>forward_143
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-------------------------------------------CGGATCATCGATGGAGCCAA-----------------
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>reverse_1680
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-------------------------------------------------------------------------------G
GACTGGAGATGGATCGCTG-------------------------------------------------------------
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