>input_sequence_80646
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---------------------------------------------------------------ATGCCCAGCAGCTCATT
GACGGAGAGAACCTCAGCTCCAGACCGATCGGCCACGCCACGCCCCTCCTCCTTCAGCTCAATGGAGAATAACCACCACC
GGCAGGGACCGGCGACGTCTACGCCGGCGACGAGGAGCAGGACACGGCGGGACCCCGCCGAGGACCACCTCTACCGGGTG
CCGCCGCAGGACTTCGCCCTCACCGTGCAGAGGCTCACCGGCGCCGCCCCTCCGCGCACG---CCGCCTCCTCATCCTCC
TGATCGGGATGATCGGCAGCCGTCCCCGGCA---------CCGCCGCCAGCATTGTCCATGCAGGAGGCCTACCTGGACT
GGTGCGCCTCCAACTGCGTCGTTCTCAGCCCCGGGACGATGGCCGAGATTGACCGCGCCGCCCGATTTAACTCAGGGGTA
AA------CAATAATAACTGTAGTTAA-----------------------------------------------------
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>chr1D_1_TraesCS1D01G312000
GGACGAGCGTTGGGCGTAGCTCTACTTGTGCATATACACGCATGCATGGCATGCCTATACGCGCACTCGTCACTACAAAC
GGGAGCTCTGCTTACCGGCGAGCTGCGCCCAAAGAAGAGACCGCGCATCGACGAGGAGCTTGCCAAGGAGGAGGCCGCGG
CGCTCACCGGCGCCGGCGTTGCCCCGGCTCCGGCGCTTCCTCGACGCTGCCCCGGCTCCGGCCCTTATCCGGCGCG----
-GCGGCGTGGTTGGTGGTCTGGAGCAGGGTGGGTGGATGGGTGGGAGAAGAGAGAGAGGCAAGGAGGAGAGAGATGGGAT
GGGTGGTCGGATGACATGTGGGCCACGCAGCACATGTAAGTGCGCAGAAGCGGACGAGGAGAGCAAAGAAAGCGTCCGCT
TTGTGTTCCGTCGCCGACCCAAATACAACCCAAATTTGAGACGGAAATGGGTCTGCGCGGATA-----------CAAAAT
AAAAATGGATCTCTACGATTGGGTAGTCTATTTTGTCCGCGCCGATCAAAACGAACACAGGCGGATGAAATGGGTCGCCC
TCATTGAAGTTGCTCTAACTAAATATCCAAATACACGACACACTGT-AGCACACAGCT-GGGAACAAAATTGTTACGATT
TGGCCGGTGAATGAATATGGCTTTGTTAAGACATGTGCATTCCGTCTGTGCTGACTCCTTAATTTACTACAAGATGCGGG
CACGCACTCACGTAGGTAACCGATGAGGTATTCGGTGTGTTCTTATTCTTTAATAATTTATTTACAAGATGC----ATCG
ATCGACCGCCAAAGTGGCACGGTAA-GGAACGAGGCGAGCCAGGCCAGAGACGCGTCCGTGCTGACGTAATCCAAGGAGC
ACCGAGGAAGACCTCCACAGGGTAAGCCGCCATGTGTGACGTCATCTTCTGCGTGGACGTCCCTGTCACCGAGGCCCCGG
CGACCCGGCGTATATATACCCTTGTTGAGATGCTGCGACCAAGCTTCTCCAGCACTTGACTGCATGCCCAGCAGCTCATT
GACGGAGAGAACCTCAGCTCCAGACCGATCGGCCACGCCACGCCCCTCCTCCTTCAGCTCAATGGAGAATAACCACCACC
GGCAGGGACCGGCGACGTCTACGCCGGCGACGAGGAGCAGGACACGGCGGGACCCCGCCGAGGACCACCTCTACCGGGTG
CCGCCGCAGGACTTCGCCCTCACCGTGCAGAGGCTCACCGGCGCCGCCCCTCCGCGCACG---CCGCCTCCTCATCCTCC
TGATCGGGATGATCGGCAGCCGTCCCCGGCA---------CCGCCGCCAGCATTGTCCATGCAGGAGGCCTACCTGGACT
GGTGCGCCTCCAACTGCGTCGTTCTCAGCCCCGGGACGATGGCCGAGATTGACCGCGCCGCCCGATTTAACTCAGGGGTA
AA------CAATAATAACTGTAGTTAATAGTAGTACTAGCT-AGCTTACTGCATATTCGTATACAGATATATGCAAGC--
---------TTTAGCTCGATCTCAGCCTCTTGTAATTTGACGTGCTGAAGGTTTTCGTACAGCA-----------CACAT
TTGCTAGGTTCGACAG----------------------------------------------------------------
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-------------------------------------------------ACTCGCTATTTATAAACCAAGCTGATGTGTG
TTATTGGCGAAATTAAAATGTTAGTACTATCCTTTTTCAAAAACAAT----TTACTGTATCCTTCATTCAACGCCTATTG
TTCATCTTCTTCCTC-----------------------------------------------------------------
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----------------------------TGACCACTCCCCCCCTTCCCCTAC----------TCTGCCTCTCCTCCACCA
TGACGTTGTGGTTACCCACAGTGTGTCCCCGTCTT---------------------------------------------
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-----------------CTCTTCGGGGCTGCACATGAGGATTCGACTCCCGCCCACGAAAGCTTTGGCTAAAGTTCTGAC
AAGCAGGCTTAAGCCCATGATCCAAACCTTGGTACATGGCGACCAGACCGGCTTAATGAAAGGTCCATTGCTGAGAATTT
CATCTACTCAGCGGACCTTCTTAATTGTTGCCACCCTAAAAAA--AACACCATGGTTTTCAAACACGACTTTTGAAAAGC
CTTGGACTATGTTAGCTGGGATTCCCTCCTCTCCATTCTTTTCGTTCGTGGCTTCCCTCTCGCCTGGTTTGTTTCTCTCC
ACACTGACAGCTCTACCTTCGTTGCCCCTACGACAACCTTCGTCTCTCCCGTCTTCACCTTTCCACATGCATATCTTGAG
CTCCCTCTCCTGTCGATAAAACTTCCCTCCACCGCCTTCCAACCCACCTCTCCGGATGGGTGGTGAGGCTTCTCAGTCAT
GATGCTAGACTCACTTTGCTCTCATCCGGCCTTCACTCACTCACTTCATGTCTGTCTTTCGCCTCCCCAAAAAATCCTGA
AACAGCTAGATGCGACCCGCAGAGTCTTCTTCTAGGTTGACCAAGAAACATGCACAAGGGCTAAGTGTATTATTTCTTCG
AAAATGTTTGCAAACAAAAAATAATGGTGGTCTAGGTGTTAAAACCTGCTCACT
>chr1D_1
GGACGAGCCTC-GGCGTAGCTCTACTTGTGCATATACACGCACGCATGGCATGCCTATACGCGCGCTCGTTGCTACACAC
GGGAGCTCTGCTTACCGGCGAGCTGCGCCCAAAGAAGAGACCGCGCATCGACGAGGAGCTTGCCAAGGAGGAGGCCGCGG
CGCTCACCGGTGCCGGCGTTGCCCCGGGTCCGGCGCTTCCTCGACGCTGCCTCGGCTCCGGCCCTTCTCCGGCGCTGTCC
CGCGGCGTGGTTGGTGGTCTGGAGCAGGGGGTGGG--TGGGTGGGAGAAGAGAGAAAGGAAAGGAGGAGAGAGATGGGAT
GGGTGGTTGGATGACATGTGGGCCACGCAGCACATGCAGCGCGCAGG-AGCGGACGAGGAGAGCAGAGAAAACGTCTGCT
TTGTGT-CCGCCGCCGACCCAAATACAACACAAATTTGAGACGGAAATG------CGCGAACACAAAGCGGACGCAAAAT
GAAAATGGATCTCTGCG-TTGGGCAGTCTATTTTGTCCGCGCCGACCTAAACGGACGCAGCCGGACGAAA----------
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>chr6D_1
GGACGAGCCTTGGGCGTAGCTCTACTTGTGCATATACACGCATGCATGGCATGCCTATACGCGCGCTCGTCACTACACAC
GGGAGCTCTGCTTACCGGCGAGCTGCGCCCAAAGAAGAGACCGTGCATCGACGAGGAGCTTCCTCT--------------
---------------GCGTTGCCCCGGCTCCGGCGCTTCCTCGACGCTGCCCCGGCTCCGGCCCTTCTCCGGCGCTGTCC
CGCGGCGTGGTTGGTGGTCTGGAGCAGGGTGGGTGGATGGGTGGGAGAAGAGAGAGAGGAAAGGAGGAGAGAGATGGGAT
GGGTGGTTGGATGACATGTGGGCCACGCAGCACATGCAGTGG-GCAGAAGCGGACGAGGAGAGCAGAGAAAGCGTCTGCT
TTGTGT-CCGCGGCCGACCCAAATGCAACCCAAATTTCAGACGGAAATGGGTCTGCGCGGACACAAAGCGGACGCAAAAT
AAAAATGGGTCTCTGTG-TTGGGTAGTTTATTTTGTCCGCACCGACCCAAACGGACGCAGGCGGACGAAATGGGTCGCCC
-CATTAAAGTTGCTCTTACT------------------------------------------------------------
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>chr1B_559
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--------------CTAACTAAATATCTAAATACACGGCACACTGA-AGCACGCAGTTGGGGAACAAAATCGTTAAGATT
TGACCGGTGAATGAATATGGCTTTGTTAAG-CATGTGCATTTCGTGTGTGCTGACTCTTTAATTTACTACAAGATGCTAG
CACGTACTCACGTAGGTAACGAATGAGGTATTCGGTGCGTTCTCATTCTTTAAT---TTATTTACAAGACGCATGGATCG
ATCCACCTCCAAAGAGGCACGGTAA-GGAACGAGGCGAGCCAGG-CAGAGACGCGTCCGTGCTGACGTAATCCGAGTAGC
ACCCAGGGAGACCTCCACAGGGTAAGCCGCCGTGTGTGACGTCATCTTCTGCGTGGACGTCGCTGTCCCCAGA-CCCCGA
CGACCCGGCATATATATACCCTTGCTGAGATGCTACGACCAAGCTTCTCCAGCACTTGACTGCATGCA---CAGCTCATT
GACCGACCGAACCTCAGCTCCACACCGATCG-----GCCACGCACCTCCTCCTTCAGATCAATGGAGAATAACCACCACC
GGCAGGGACCG---ACGTCCACGCCGGCGACGAGGAGCAGGACACGGCGGGACCCCGCCCAGGACCACCTCTACCGGGTG
CCGCCGCAGGACTTCGCCCTCACCGTGCAGAGGCTCACCGGCGCCGCCCCTCCGCGCACG---CCGCCTCCTCGTCCTCC
TGATCGGGATGATCGGCAGCCATCCCCGGCAGCGCCGCTGCCGCCGCCAGCATTGTCCATGCAGGAGGCCTACCTGGACT
GGTGCGCCTCCAACTGCGTCGTTCTCAGCCCCGGGACGATGGCCGAGATTGACCGCGCCGCCCGATTTAACTCAGGGGTA
AA------CAATAATAATTGTAGTTAATAGTAGTACTAGCTTAGCTTACTGCATATTCGTATACAAATATATGCAAGC--
---------TTTAGCTCGATCTCAGCCTCTTGTAATTTGACGTGCTGAAGGTTTTCGTACAGCA-----------AACAT
TTGCTAGGTTCGACAAAGGCGAGTGATACGCGCCGGTGCACCGGCCGAAATTTGGGCCGGTCGGATCAGCAGCGTCCGAT
CAAACATCGAATAGCCACACGATTCTCTCTCCTTCCTCTGTTAGATGTTTTTTTTTCCTTCAAAAAAAAAAGCTTCCATC
GGGTAGCCATGGACTAGCGACGCACCACCTTGAAGCACCGCCTGGCGCGTCTCTCCAGTCATTGCCCTCACCGCCGGTCG
TCCTCGTCCTTGCAGGTCGCCGTCGTAGCCGCCGCAGCCGCCTCTTGCGTTTCTCGCTACATGCATGCAGCAGCGTGCGC
TTGCGGTTGCAGCTCCCCGTGGCGCCGGCCGTAGCTCCGGTCGCGCCGGTCGCCGGTTGCAGCGACAATGAGCTAGCAAA
AAAAGGAAGTGCTCACACTCATTGCTGGTCGTAGCAAATCCGCTCGCCGGATGTAACTTTTATAGTCGCCGGTTGTAGCA
AAAACACCACACATCACCACCAAATGAAGAAGTCGATGTAGCAGAAAATGTAGCAAGTTCCAGCAAAAATAGAAGCTGGT
TCCAGCCCAAAAGCACGTCGGCAGTGTGGAGGCGCGTCCAGTCCCATCAAAATCACAGGAAGCAAAATCCAAAAAAAGTA
GATGTAGCAAAAAAAAGTAGCAAGTTCCAGCAAAAAACCGTCCGCGGTGGGAGGGCGCGTCCGGTTCCAGCACCGATGGA
TGCAGGTTCCAGCAAATTTTGTGACTGGTTGTAGCACCGTTGATGCCTGGTTCCAACAAAAACTTCGCCACACCAAAAAT
TGCCGCCTCGTCGCAGCACCGGGCTCAGCCGGTTCCAGCATCCTCCACCACGGTTCCATCATTTTGCCACTGTGGTTGCA
GCACCCGTCGGCGTGGTCACCATGCAGCACCCGTCGGCGTGGTCACCATGCCCATGGTGGGCAGCGCCATGCTCGACCGG
TTGCAGCATCGCTGGACGCCGTCTCCAGCACCAATGGACGCCCCCGTCTCCAGCACCCGCTCCGCCACGCCGCCCCAAGG
CCGCCGCCGCGCAGTGGTTAGCAGCGCCGCCCCCCGTCAAAGCCATGAGGATGGAGAAGGTGTAGGCCATGTCCTCCCCC
TGCCTTCGTGAGAACTGATTTGAGATCCATGGGAAAGGAGATGAGGTAGAAAATGAATGGACAGGAAGGCTCACTAGGGG
ATAAGGAAAGGAGAAACAGCGGTGCGTGGGCCTGTTTTGACGCGTGGGAGGACGTACTGCATGACGTGGAGATGGAGACC
GGCCGAGCGTTGCGCCGGCACACCGATTACAAACATTTCCCTTCGACAAACTCGCTATTTATAGACCAAGCTGATGTGTG
TTATTGGCGAAATTAAAATGTTACTACTATCCTTTTTCAAAAATAAT----TTACTGGATCCTTCATTCAACGCCTACTG
TTCATCTTCTTCCTCCAGCTAACACCCTCCAAACACACGCATGCGCGCCCTTGTGGCCATGACATCCCTGCAGCGTTTTG
ATTTTCGCTTTGTGATTTTTCTCGCCCTAGGCCGAGATGGCCGAATTTCGGCCGTTTTTAAAAATTTCGGCCGAAATTTG
ACTAAATTTTGACTGAAATTTGCTGAAAATTTGATCAAAATTTCTCAAATTTGACCAATTTCGGCGGAAGATAGATTTCG
CCCTAGGCCGAGATGGCCGAAATTTGGCCGAAATCCGTTTTTTTCGGCCGAAATTCAAAACACAGCATCCCTGTCTTAGG
GATTGTTTCCTTTCTACATCGATCAAAATGACCCCTCCCCCCCTTACTCTACCCAGTCAACCTCTGCCTCTCCTCCATTA
TGACGTTGCGGTTACCCACAGTGTGTCCCCGTATCCTCTTCCGGGCTGCACATAAGAATTCGACTCCCGCCCATGAAAGC
TTTGGCTAAAGTTCTGACAAGCAGGCTTAAGCCCATGATCCAAACCCTGGTACATGGCAACCAGACCGGCTTAACGAAAG
GTCCATTGCCGAGAATTTCATCTACACCGCAGACCTTCTTAATTGTTGCCACACTCGAAAAAAAACACCATGGTTTTCAA
ACACGACTTTTGAAAAGCCTTCGACCGAAGTGAAACTGACACGGTCTTCCCTCCTCCTCCTCTCGCGACCGCGTCGCCCC
TGCGGGCGACCTCCTCCTCCTCCAGCCCCCCTCTCGGCCCCCTCTCGCGGGCGACCGGGGTCGCTGGTCGCGGTGGCCCC
CCTGACCTTCCCCTCCCAGTGGCTCTCTGACGCGGGGCGTAGCTGCACCGGGAGGGGGGGTGCTCCTAGGCGGCGGCGGT
CTGGCTGGCGGCGGGGTTTCCCGGCACGGCGTGGGCGGGCGGCTGGGCGGCAGCGCCGTCATTGGCAGCGAGGTGGCGCT
GCGGTGCGGCCTGGCGACGGCTCTCAGCCCAAATCTGGGCCCTTCGGGTCCCATCTAGGCCTTGGCGGGCCGGGGATGGG
ACGAGTCTGCGGCGTGACTCTCGGGAGGAGAGGGAGCGGCGATGAACGGCGGGGTGCTGGTGGCGTGGATGCCAGCCTGC
TGCAACGTGGCTGGCGGGGCTTAGCGGGCCCATTTCGGGCCTGGCCGGGCCAGGGGTGGCCTGGTATGCCCCACTGCCGT
GTCCAGACGGCTACTGTGACGGTGGCGGAGCCGCAGGCCTCAAAAATGACGGCGGTGGAGGTGGTTCCCTCCCGCTCGGC
CTTGGTGCTGCTGCTCCCGTCGATGGCCATGACATCCCTGTCTTAGGGATTGTTTCCTTTCTACATCGATCAAAATGACC
CCTCCCCCCCCCACCCCCACCCCCTGTTACTCTACCCAGTCAACCTCTGCCTCTCCTTCATCATGATGTTGCAGTTACCC
ACAGTGTGTCCCGTATCCTCTTCGGGGCTGCACATAAGGATTCGACTCCCGCCCACGAAAGCTTTGGCTAAAGTTCTGAC
AAGCAGGCTTAAGCCCATGATCCAAACCCTGGTACATGGCGACCAGACCGGCTTAACGAAAGGTCCATTGCCGAGAATTT
CATCTACACCGCGGACCTTCTTAATTGTTGCCACACTCGAAAAAGAACACCATGGTTTTCAAACACGACTTTTGAAAAGC
CTTCGACT------------------------------------------------------------------------
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>chr1A_559
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--------------CTAACTAAATATCTAAATACACTACACACTGAAAGCACGCAGCTGGGGAACAAAATCGTTAAGATT
TGACCGGCGAATGAATATGGTTTTGTCAAG-CATGTGCATTCCGTGTGTGCTGACTCTTTAATTTACTACAAGATGCGGG
CACGCACTCACGTAGGTAACCGATGAGGTGTTCGGTGCGTTCCCATTCTTTAAT---TTATTTACAAGATGC----ATCG
ATCCACCTCCAAAGAGGCACGGTAAAGGAATGAGGCGAGCCAGG-CCGAGACGCGTCCGTGCTGACGTAATCCAAGTAGC
ACCCAGGGAGACCTCCACAGGGTGAGCCGCCATGTGTGACGTCATCTTCTGCGTGGACGTCCCTGTCGCCGAGG------
---CCCGGCGTATATATACCCTTGCTGAGATGGTACGACCAAGCTTCTCCGGCGCTTGACTGCATGCCCAGCAGCTCATT
GACCGGCCGAACCTCAGCTCCAGACCGATCGGCCGCGCCACGCACCTCCTCCTTCGGATCAATGGAGAATGATCACCACC
GGCAGGGACCGGCGACGTCTACGCCGGCGACGAGGAGCAGGACACGGCGCGACCCTGCCCAGGACAACGTCTACCGGGTG
CCGCCGCAGGACTTCGCGCTCACCGTGCAGAGGCTCACCGGCGCCGCCCCTCCGCGCACGCCTCCGCCTCCTCCTCCTGA
CGATCGGGATGATCGGCGGCCATCTCCGGCACGGCCACCGCCGCCGCCAGCATTGTCCATGCAGGAGGCCTACCTGGACT
GGTGCGCCTCCAACTGCGTCGTTCTCAGCCCCGGGACGATGGCCGAGATTGACCGCGCCGCCCGATTTAACTCAGGGATA
AATAATGGCAATAATAATT--AGCTAATAGTACTGG-----TAGCTTACTGCATATTCGTATATAGAGATATACGCAAGC
TATGTGCTATTTAGCTCGATCTCAGCCTCTTGTAATTTGACGTGCTGAAGGTTTCCGTACAGCAACGAAACCGCGCAAAT
TTGCTAGGTTCGACAG----------------------------------------------------------------
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-------------------------------------------------AGTCGCTATTTATAAATCGAGCTGATGTGTG
TCATTGGCAAAACTAAAATGTTATTG-TATCCATTTTCAGAAAAAACAGAATTACTGTAT--------------------
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>SNPs
--------S-------------------------------------------------------S------------S--
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----------S-------------------------------------------------------S--------S----
-----------------------------------------------------------S--------------------
-------S----------------------------S-SSS-S----------------------S----------S---
------S---S--------------------------------------------------S------------------
--------------S--S---------------------------S-S-----S--S--------S--------------
S----S---------------------S-----------------S------S-----------------S----S----
--S---------------------------S--------------S-----------S----------------------
-------------------------------------S-----S----------SSS-----------------------
---S---S------S-----------------------------S-------------------------------S---
---S---S-----------------------------------------------------------S-----------S
------------------------S---------S---------------------------------------------
---S--SS--------------------------S--------S-------------S----------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------------------------------S------
---------------------S----------------------------------------------------------
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-----------------S--------------------------------------------------------------
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-----------------------S-------------------S---------------------------------S--
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---------------------------------S-----------S-S-----------------------------SS-
--------S-----------------------S-S---------------------------------------------
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-----------------------------------S--------------------------------------------
----------------------------S---------------------------S--------------S--------
-------S-S------------------------S--SS-----------------------------------------
---S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_884
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----------------------------------------------------------------ACGTAATCCAAGGAGC
ACCG----------------------------------------------------------------------------
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>reverse_4987
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--------------------------CGGCCTTCACTCACTCACTT----------------------------------
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