>input_sequence_80626
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----------------------------------------ATGCGCAACTCAAAACCGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACTATGCACTTGTCTCCCAAAATTGTACTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AAAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCGCGTGCCGAACCAATCTCTCTGAACAAAGCAAACGCCTCATCC
ACACGGCCGCACCGGACATACCTATGCATAACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
GCGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCTGTGATCACTGCGTTCCACGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACTGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAG------------
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>chr5B_1_TraesCS5B01G149100
GCGGAAAGGACACCAACAAATGTCCGTTCGGTTGGTCTTTCACCGCTAACTCTCATCAGCTCCAAGAGTTCTAGTGCCTT
GCGTCCATGCCCGTTGGAAGCATAACCAATTAGCATTGAGTTCCACATGACTTCGTCGGGCTTGTATATTCCATCGAAAA
TTTTGCAACCATTGGCCAAGTTGCCACATTTGCAATACAGATCGATGACTGAAGAGGCTACAACATGGTCAGACTGCAAG
CCAAGAACAGTAGCAAGAGAAAAAATCTGCTCCCCAAAACTTATGGAGCAAATATTACTTGATGCACTCAGAGCACTAGC
TATAGCAACCTTGTCGAGCCGCACGCCAAGGCGATGCATCTTGCAGAACAGCTCCATGGCATCAATTGCATGTCCATTCT
GGCTCAACCCAACAACCAAAGAGTTCCATGATATGACACTCTTGCTAGTGATCATCGAAAAAACTCTTTTCGCCTCTTCT
ATCCGCCCACAGTTTGAGTACACGGTGATCATTGAATTGAGCACCACAGTATCGTGAAACCTAAGCTCACTGAAAGCTCG
ACAAGCATCCTCCCAGAGGGTGCATTTTGAGTAGAAGTCAATGAGAGCGCTTGCTGCTATCATGTCATTGACAGTCCCAC
TCTTTAGACCACACCCATGTATCTGCTGCCCAGACTTGAGCATTCCTGAAAAACCACAAACATTCAGAACGCTGGCATAC
GTTGAAGAATCAGGCAACACATCTGACCGCATCATCCTTACAAAAAGAGCAAAAGCATCATCTCCAAGGCAGGCAAATGC
ACAGCCACTGATGAGAGAATTCCACAAAAGAATGTTGAGGTTCTCCACCCTATCAAAAATATGTAACGCCTTGTTTAGCT
GTCCACGGGAAGCATAGCCATAGACCAGGGCAGAAACAGAGAACTCGTCAATCTGTGCTAAACCATCAAAGACACGCCGA
GCAGAGTCCACATCCCCACACTTGCAGTACATGTCCACCAATGCGCAACTCAAAACCGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACTATGCACTTGTCTCCCAAAATTGTACTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AAAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCGCGTGCCGAACCAATCTCTCTGAACAAAGCAAACGCCTCATCC
ACACGGCCGCACCGGACATACCTATGCATAACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
GCGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCTGTGATCACTGCGTTCCACGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACTGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAGGAGAAGCAGTTC
CTGCCGGGCATTTCGTCGAACAATCGCAGTGCGTCGCGGCGGTGGGTCGGAGAGAAACGGGCGTACATGAGGAGGACCGA
GTTGGAGGGCGGGAGGGAGGACGGGACGTGGCCGGACTTGAGGAGGACCTGGTGCAGCTGCTGGCCGGCCACGGCGCCGC
AGGTGCGGAGGAGCTGGATGGAGCCGCGGACGTCGACGGCGACGGCCATGAGGCTCTGACGTGGGGCATGGGGGTTCAGT
TAAACCCCAGAAAGTGCAAAATTTTTGGACTGCTGGACTCACGGGTGTGCTGTACAAATGACCACACATACACTGAGAGC
ATCTCCAATGGGGAGGTAGAGTACTCGCGCTGCAAAAAGAACAACATTTTAGTATGCGCATGGCCATTTGGCGAGCTCCA
ATAGACGCGTAAAAAAAAATAAGAACGCGGGCGGAAAAGCGGCATCGCGCCCGGCAGTTTTGGCACGTGTCGTCCAACGT
GCTTGATAAAAGCCGCGCGCGGGCGCCCGCAAACCGCCATCTTCTCGCCTCG------CCTTCTTCCTCGCTTCTTCCGG
TGCCCCGCCGTCGCCGCGCCTCCCCCCTCGCCACCATG---CCGGCGCGCCCCCGGAGCACCTCAGGCTACCGCTGCGTC
CGTCTCCGCCCCTCCGGCATGTATTACGCGGAGATCCGCTCCGGTGGTACATGCATCGGGCTCGGAAAGTTCGAGACCGC
ACAAGAGGCCGCCCGCACGTACGACGCGGCGGCGTGGCGCCTCAGAAGGCCATAGGCGCATATGAACTTCTCGAACGCGC
GAGCAAGCGCAGGAACTCACGCCTCCCCCGCGGCTAATCACCGACGAGGATCGCCGCATCCAGCGGAGGCGGGAGCGCCG
CCTCCTCGTTGCCGAGGCGGATGAGCACGCCATGGCGGTGTGGCGCGAGCACTTCCAGCAAGATGTCGTCGCCGAGAACG
AGTTCTGGGTGCAGAGGAGGCCGAAGCGAGTCACACG
>chr5A_1
GCGGAAAGGACACCAACAAATGTCCGTTCGGTTGGTCTTACACCGCTAACTCTCATCAGCTCCAAGAGTTCTAGTGCCTT
GCGTCCATGCCCATTGGAAGCATAACCAATTAGCATTGAGTTCCACATGACTTCGTCAGGCTTGTCTATTCCATCGAAAA
TCTTGCAACCATTGGCCAAGTTGCCACATTTGCAATACAGATCGATGACTGAAGAAGCTACAACATGGTCAGACTGCAAG
CCAAGAACAGTAGCAAGAGAAAAAATCTGCTCCCCAAAACTTATGGAGCAAATATTACTTGATGCACTCAGAGCACTAGC
TATAGCAACCTTGTCGAGCCGCACACCAAGGCGATGCATCTTGCAGAACAGCTCCATGGCATCAATTGCATGTCCATTCT
GGCTCAACCCAACAACCAAAGAGTTCCATGATATGACACTCTTGCTAGTGATCATCGAAAAGACTCTTTTCGCCTCTTCT
ATCCGCCCACAGTTTGAGTACACAGTGATCATTGAATTGAGCACCACAGTATCATGAAACCTAAGCTCACTGAAAGCTCG
ACAAGCATCCTCCCAAAGGCTGCATTTTGAGTAGAAGTCAATGAGAGCACTTGCTGCTATCATGTCATTGACAGTCCCAC
TCTTTAGACCACACCCATGTATCTGCTGCCCAGACTTGAGCATTCCTGAAAAACCACAAACATTCAGAACGCTGGCATAC
GTTGAAGAATCAGGCAACACATCTGACCGCATCATCCTTACAAAATGAGCAAAAGCATCATCTCCAAGGCAGGCAAATGC
ACAGCCACTGATGAGAGAATTCCACAAAAGAATGTTGAGGTTCTCCACCCTGTCAAAAATATGTAACGCCTCGTTTACCT
GTCCACGTGAAGCATAGCCATAGACCAGGGCAGAAACAGAGAACTCGTCAATCTGTGCTAAACCATCAAAGACACGCCGA
GCAGAGTCCACATCCCCACACTTGCAGTACATGTCCACTAATGCGCAACTCAAAACCGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACCATGCACTTGTCTCCCAAAATCGTACTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AGAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCGCATGCCGAACCAATCTCTCTGAACAAAGCAAGCGCCTCATCC
ACACGGCCGCACCGGACATACCTATGCATCACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
GTGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCAGTGATCACTGCGTTCCAGGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACGGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAGGAGAAGCAGTTC
CTGGCGGGCATTTCGTCGAACAATCGCCGTGCGTCGCGGCGGTGGGTCGGGGAGAAACGGGCGTACATGAGGAGGACCGA
GTTGGAGGGCGGGAGGGAGGACGGGACATGGCCGGACTTGAGGAGGACCTGGTGCAGCTGCTGGCCGGCCACGGCGCGGC
AGGTGCGGAGGAGCTGGATGGAGCCACGGACGTCGACGGCGACGGCCATGAGGCACTGACGTGGGGCATGGGGGTTCAGT
TAAACCCCACAAAGTGCGAAGTTTTTGGACTGTTGGACTCACCGGTGTGCTGTACAAAT---------------------
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>chr5D_1
GCGGAAAGGACACCAACAAATGTCCGTTCGGTTGGTCTTACACCGCTAACTCTCATCAGCTCCAAGAGTTCTAGTGCCTT
GCGTCCATGCCCGTTGGAAGCATAACCAATTAGCATTGAGTTCCACATGACTTCGTCGGGCTTGTCTATTCCATCGAAAA
TCTTGCAACCATTGGCCAAGTTGCCACATTTGCAATACAGATCGATGACTGAACAGGCTACAACATGGTCAGACTGCAAG
CCAAGAACAGTAGCAAGAGAAAAAATCTGCTCCCCAAAACTTATGGAGCAAATATTACTTGATGCACTCAGAGCACTAGC
TATAGCAACCTTGTCGAGCCGCACACCAAGGCGATGCATCTTGCAGAACAGCTCCATGGCATCAATTGCATGTCCATTCT
GGCTCAACCCAACAACCAAAGAATTCCATGATATGACACTCTTGCTAGTGATCATCGAAAAAACTCTTTTCGCCTCTTCT
GTCCGCCCACAGTTTGAGTACACGGTGATCATTGAATTGAGCACCACAGTGTCATGAAACCTAAGCTCACTGAAAGCTCG
ACAGGCATCCTCCCATAGGCTGCATTTTGAGTAGAAGTCAATGAGAGCGCTTGCTGCTATCATGTCATTGACAGTCCCAC
TCTTTAGACCACACCCATGCATCTGCTGCCCAGACTTGAGCATTCCTGAAAAACCACACACGTTCAGAACGCTGGCATAC
GTCGAAGAATCAGGCAACGCATCTGACCGCATCATCCTTACAAAAAGAGCAAAAGCATCATCTCCAAGGCAGGCCAATGC
ACAGCCACTGATGAGAGAATTCCACAAAAGAATGTTGAGGTTCTCCACCCTGTCAAAAATATGTAACGCCTCATCTAGCT
GTCCACGTGAAGCATAGCCATAGACGAGGGCAGAAACAGAGAACTCGTCAATCTGTGCTAAACCATCGAAGACACGCCGA
GCAGAGTCCACATCCCCACACTTGCAGTACATGTCCACCAATGCGCAACTCAAAACTGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACCATGCACTTGCCTCCCAAAATCGCGCTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AAAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCACATGCCGAACCAATCTCTCTGAACAAAGCAAACGCCTCATCC
ACACGGCCACACCGGACATACCTATGCATCACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
ATGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCTGTGATCACTGCGTTCCAGGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACGGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAGGAGAAGCAGTTC
CTGCCGGGCATTTCGTCGAACAATCGCCGTGCGTCGCGGCGGTGGGTCGGGGAGAAACGGGCGTACATGAGGAGGACCGA
GTTGGAGGGCGGGAGGGAGGATGGGACATGGCCGGACTTGAGGAGGACCTGGTGCAGCTGCTGGCCGGCCACGGCGCCGC
AGGTGCGGAGGAGCTGGATGGAGCCGCGGACGTCGACGGCGACGGCCATGAGGCTCTGACGTGGGGCATGGGGGTTCAGT
TAAACCCCAGAAAGTGCGAAGTTTTTGGGCTGTTGGACTCACGGGTGTGCTGTACAAATCAACACGTATACTGA------
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>chr1D_1911
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----------------------------------------------------------------------CGTCCAGCGC
GCTCTATAAAA-CCGCGCGAGGGCGCCCGCCAACTGCCGTCTCCGTCGCCTCTCTCTTCCTTCGTCCTCGCCTCTGCCGG
TGCCCTGCCGCCGCTGCGCCCTTCTTCCCCGCCTCCAGCGCCCGCCACGCGCCCGGAGCAGCTCCGGCTACCGCGGCGTC
TGTGCCCGCCCCTCCGGCGTGTATTACGTAGATATCCGCTCCGATGATACATGCCTCGGCCTCGAGATGTTCGAGACCGC
CCACGAGGCCGTCCTCGCGTACGACGCGGCGGCGTGGCGCCTCAGGAGGCCACGAGCGCAGATGAATTTCTCAGACGCGC
CAGCAGGCGCAGGACCTCGCGCCTCCGCCGCGGCTAATCACGGCGGAGGACCGCCGCATCCAGCGGAGGCGAGAGCACCG
CCTCCTCATCGCCGAGGCGGATGAGCACGCCATGGCGGCATGGCGCGAGCGCTTCCCAGAGGATGTCGCCGCCGAGAACG
AGCTCTGGGAGCAGAGGAGGGCGCAGCGAGCCAC---
>SNPs
---------------------------------------S----------------------------------------
-----------------------------------------------------------------S--------------
-S------------------------------------------------------------------------------
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------------------------S-------------------------------------------------------
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-----------------------------------------------------S--------------------------
---------------S---S------------------------------------------------------------
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---------------------------------------------------S-------------------S--------
-------S------------------------------------------------------------------------
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-----------S--------------------S-----------------------------------------------
---------------------------------------S----------------------------------------
-----------------------------S--------------------------------------------------
-S----------------------------------------------------S-------------------------
------------S-------------------------------------------------------------------
---------------------------S----------------------S-----------------------------
---------------------------S----------------------------------------------------
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-----------------S--S-----------S--------------------------S-S---SS----SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--S
---SS------S-------S----------S---S---S---S-SSSS-SSS-----------S-------S---S----
-----S----S---S-----SSS-SS-S-SS-SS-SS-------S-S---S---------S---S---------S-----
S--SS-------------S---------SS--S----------S--S-------S----S----SS-S------------
S--S-------S--S-S----------------------------S------SSS-----S-----S-----SS------
S----S--------S---S-------S--------------S-SS-----S--------------------S----S---
-------S-S----------------------------SS----------S-----SSS-S-------S-----------
--S------S----------S--S------S---SSS
>forward_40
--------------------TGTCCGTTCGGTTGGTCTTT----------------------------------------
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>reverse_1785
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------------------------TCGCGCTGCAAAAAGAACAA------------------------------------
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