>input_sequence_80625
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----------------------------------------ATGCGCAACTCAAAACCGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACCATGCACTTGTCTCCCAAAATCGTACTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AGAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCGCATGCCGAACCAATCTCTCTGAACAAAGCAAGCGCCTCATCC
ACACGGCCGCACCGGACATACCTATGCATCACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
GTGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCAGTGATCACTGCGTTCCAGGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACGGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAG------------
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>chr5A_1_TraesCS5A01G150400
GCGGAAAGGACACCAACAAATGTCCGTTCGGTTGGTCTTACACCGCTAACTCTCATCAGCTCCAAGAGTTCTAGTGCCTT
GCGTCCATGCCCATTGGAAGCATAACCAATTAGCATTGAGTTCCACATGACTTCGTCAGGCTTGTCTATTCCATCGAAAA
TCTTGCAACCATTGGCCAAGTTGCCACATTTGCAATACAGATCGATGACTGAAGAAGCTACAACATGGTCAGACTGCAAG
CCAAGAACAGTAGCAAGAGAAAAAATCTGCTCCCCAAAACTTATGGAGCAAATATTACTTGATGCACTCAGAGCACTAGC
TATAGCAACCTTGTCGAGCCGCACACCAAGGCGATGCATCTTGCAGAACAGCTCCATGGCATCAATTGCATGTCCATTCT
GGCTCAACCCAACAACCAAAGAGTTCCATGATATGACACTCTTGCTAGTGATCATCGAAAAGACTCTTTTCGCCTCTTCT
ATCCGCCCACAGTTTGAGTACACAGTGATCATTGAATTGAGCACCACAGTATCATGAAACCTAAGCTCACTGAAAGCTCG
ACAAGCATCCTCCCAAAGGCTGCATTTTGAGTAGAAGTCAATGAGAGCACTTGCTGCTATCATGTCATTGACAGTCCCAC
TCTTTAGACCACACCCATGTATCTGCTGCCCAGACTTGAGCATTCCTGAAAAACCACAAACATTCAGAACGCTGGCATAC
GTTGAAGAATCAGGCAACACATCTGACCGCATCATCCTTACAAAATGAGCAAAAGCATCATCTCCAAGGCAGGCAAATGC
ACAGCCACTGATGAGAGAATTCCACAAAAGAATGTTGAGGTTCTCCACCCTGTCAAAAATATGTAACGCCTCGTTTACCT
GTCCACGTGAAGCATAGCCATAGACCAGGGCAGAAACAGAGAACTCGTCAATCTGTGCTAAACCATCAAAGACACGCCGA
GCAGAGTCCACATCCCCACACTTGCAGTACATGTCCACTAATGCGCAACTCAAAACCGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACCATGCACTTGTCTCCCAAAATCGTACTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AGAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCGCATGCCGAACCAATCTCTCTGAACAAAGCAAGCGCCTCATCC
ACACGGCCGCACCGGACATACCTATGCATCACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
GTGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCAGTGATCACTGCGTTCCAGGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACGGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAGGAGAAGCAGTTC
CTGGCGGGCATTTCGTCGAACAATCGCCGTGCGTCGCGGCGGTGGGTCGGGGAGAAACGGGCGTACATGAGGAGGACCGA
GTTGGAGGGCGGGAGGGAGGACGGGACATGGCCGGACTTGAGGAGGACCTGGTGCAGCTGCTGGCCGGCCACGGCGCGGC
AGGTGCGGAGGAGCTGGATGGAGCCACGGACGTCGACGGCGACGGCCATGAGGCACTGACGTGGGGCATGGGGGTTCAGT
TAAACCCCACAAAGTGCGAAGTTTTTGGACTGTTGGACTCACCGGTGTGCTGTACAAATCTTACATTCTTCTTATAAGAA
GAGTTATAAAAGCACCGGAAGTCCTACAACTTGCGTTGAATGTGATGGTTTGGTTCTAGAACTTGCATTTTGATCCTACC
TAGTCCTTGAACTTGCATCAAAGGTGCAAATTTGGTCCTGGCCAATCACAGAGCGACATGTGGACATGTGGGTGCCGACC
CGGTCAGCATGCGCCATTTTGCAAAGAGGCCCCTTTCTTTGGTTTGAATCTACCCGCAGGCCACGAAAACACCTAAATTA
ATTTTTAAAGGAGACAAACCCGCAGCTCACTCCCTCTCTGTTTGCCTGCATTTGTAACTGTGCTACGCCAGCTTGATCGA
TCGACAGAGCAATGCATTTGCGGATTTGAACAATGACAAGAGTGTGAATCATTTGCTCATTTCAATCAAGTTGACAGAAC
AACATTTTGTGATCTTTTTTCTTGCAAACAACCAAATCAGAATCAGACGCGCTAGCTACAACGGCCTTGAGGATTGAGAA
GAAGAGCAAATCTCCAAATTTACAGTCAAGAGAGAAAAGAAAAAGAAGAACAATAAATTGATTAGACAGAT---------
---CAAAGAACAAACCAGATCAGCTAAAAACCAAACAAAGCGCTATGCATCCATCATTGCGTCCCTAGCTTAGCCCGTCG
CTTTCCATGCACGACCAAGCGCTCGATCGCCCGCCGTATC
>chr5B_1
GCGGAAAGGACACCAACAAATGTCCGTTCGGTTGGTCTTTCACCGCTAACTCTCATCAGCTCCAAGAGTTCTAGTGCCTT
GCGTCCATGCCCGTTGGAAGCATAACCAATTAGCATTGAGTTCCACATGACTTCGTCGGGCTTGTATATTCCATCGAAAA
TTTTGCAACCATTGGCCAAGTTGCCACATTTGCAATACAGATCGATGACTGAAGAGGCTACAACATGGTCAGACTGCAAG
CCAAGAACAGTAGCAAGAGAAAAAATCTGCTCCCCAAAACTTATGGAGCAAATATTACTTGATGCACTCAGAGCACTAGC
TATAGCAACCTTGTCGAGCCGCACGCCAAGGCGATGCATCTTGCAGAACAGCTCCATGGCATCAATTGCATGTCCATTCT
GGCTCAACCCAACAACCAAAGAGTTCCATGATATGACACTCTTGCTAGTGATCATCGAAAAAACTCTTTTCGCCTCTTCT
ATCCGCCCACAGTTTGAGTACACGGTGATCATTGAATTGAGCACCACAGTATCGTGAAACCTAAGCTCACTGAAAGCTCG
ACAAGCATCCTCCCAGAGGGTGCATTTTGAGTAGAAGTCAATGAGAGCGCTTGCTGCTATCATGTCATTGACAGTCCCAC
TCTTTAGACCACACCCATGTATCTGCTGCCCAGACTTGAGCATTCCTGAAAAACCACAAACATTCAGAACGCTGGCATAC
GTTGAAGAATCAGGCAACACATCTGACCGCATCATCCTTACAAAAAGAGCAAAAGCATCATCTCCAAGGCAGGCAAATGC
ACAGCCACTGATGAGAGAATTCCACAAAAGAATGTTGAGGTTCTCCACCCTATCAAAAATATGTAACGCCTTGTTTAGCT
GTCCACGGGAAGCATAGCCATAGACCAGGGCAGAAACAGAGAACTCGTCAATCTGTGCTAAACCATCAAAGACACGCCGA
GCAGAGTCCACATCCCCACACTTGCAGTACATGTCCACCAATGCGCAACTCAAAACCGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACTATGCACTTGTCTCCCAAAATTGTACTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AAAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCGCGTGCCGAACCAATCTCTCTGAACAAAGCAAACGCCTCATCC
ACACGGCCGCACCGGACATACCTATGCATAACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
GCGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCTGTGATCACTGCGTTCCACGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACTGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAGGAGAAGCAGTTC
CTGCCGGGCATTTCGTCGAACAATCGCAGTGCGTCGCGGCGGTGGGTCGGAGAGAAACGGGCGTACATGAGGAGGACCGA
GTTGGAGGGCGGGAGGGAGGACGGGACGTGGCCGGACTTGAGGAGGACCTGGTGCAGCTGCTGGCCGGCCACGGCGCCGC
AGGTGCGGAGGAGCTGGATGGAGCCGCGGACGTCGACGGCGACGGCCATGAGGCTCTGACGTGGGGCATGGGGGTTCAGT
TAAACCCCAGAAAGTGCAAAATTTTTGGACTGCTGGACTCACGGGTGTGCTGTACAAAT---------------------
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>chr5D_1
GCGGAAAGGACACCAACAAATGTCCGTTCGGTTGGTCTTACACCGCTAACTCTCATCAGCTCCAAGAGTTCTAGTGCCTT
GCGTCCATGCCCGTTGGAAGCATAACCAATTAGCATTGAGTTCCACATGACTTCGTCGGGCTTGTCTATTCCATCGAAAA
TCTTGCAACCATTGGCCAAGTTGCCACATTTGCAATACAGATCGATGACTGAACAGGCTACAACATGGTCAGACTGCAAG
CCAAGAACAGTAGCAAGAGAAAAAATCTGCTCCCCAAAACTTATGGAGCAAATATTACTTGATGCACTCAGAGCACTAGC
TATAGCAACCTTGTCGAGCCGCACACCAAGGCGATGCATCTTGCAGAACAGCTCCATGGCATCAATTGCATGTCCATTCT
GGCTCAACCCAACAACCAAAGAATTCCATGATATGACACTCTTGCTAGTGATCATCGAAAAAACTCTTTTCGCCTCTTCT
GTCCGCCCACAGTTTGAGTACACGGTGATCATTGAATTGAGCACCACAGTGTCATGAAACCTAAGCTCACTGAAAGCTCG
ACAGGCATCCTCCCATAGGCTGCATTTTGAGTAGAAGTCAATGAGAGCGCTTGCTGCTATCATGTCATTGACAGTCCCAC
TCTTTAGACCACACCCATGCATCTGCTGCCCAGACTTGAGCATTCCTGAAAAACCACACACGTTCAGAACGCTGGCATAC
GTCGAAGAATCAGGCAACGCATCTGACCGCATCATCCTTACAAAAAGAGCAAAAGCATCATCTCCAAGGCAGGCCAATGC
ACAGCCACTGATGAGAGAATTCCACAAAAGAATGTTGAGGTTCTCCACCCTGTCAAAAATATGTAACGCCTCATCTAGCT
GTCCACGTGAAGCATAGCCATAGACGAGGGCAGAAACAGAGAACTCGTCAATCTGTGCTAAACCATCGAAGACACGCCGA
GCAGAGTCCACATCCCCACACTTGCAGTACATGTCCACCAATGCGCAACTCAAAACTGAATCCAGTTCAATCTTGGCAGT
CACCATTCGACCATGCACTTGCCTCCCAAAATCGCGCTTCATCCGGTCAGCACAAGCACCAACAACCGTAGCAAGCACAA
AAAGATCATTGCACGGCGAGGAGTCCGCTGCACCACCACATGCCGAACCAATCTCTCTGAACAAAGCAAACGCCTCATCC
ACACGGCCACACCGGACATACCTATGCATCACAGCGTTGACAGCCACAGCATCCTTGACGGGCATCTCGTCCAGCAGACT
ATGGGCGGTGTCCAAATCCCCTGCAGAGACCATGCCTGTGATCACTGCGTTCCAGGAAAAGTTGTTCCTTTCCGGCATGG
AGCGGAAGAGACGGAGCGCCTCGGCGTGGTCCCGGGAGTTGAGGTGGGCGGTGACGAGGGAGTTGTAGGAGAAGCAGTTC
CTGCCGGGCATTTCGTCGAACAATCGCCGTGCGTCGCGGCGGTGGGTCGGGGAGAAACGGGCGTACATGAGGAGGACCGA
GTTGGAGGGCGGGAGGGAGGATGGGACATGGCCGGACTTGAGGAGGACCTGGTGCAGCTGCTGGCCGGCCACGGCGCCGC
AGGTGCGGAGGAGCTGGATGGAGCCGCGGACGTCGACGGCGACGGCCATGAGGCTCTGACGTGGGGCATGGGGGTTCAGT
TAAACCCCAGAAAGTGCGAAGTTTTTGGGCTGTTGGACTCACGGGTGTGCTGTACAAATC--------------------
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>chr1A_1753
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------------------------------------------------------------------------TAAAAAAA
GAGT--TAAAAGCACCGGAAGTCCTACAACTTGCGCTGAATGTGATGGTTTGGTGCTAGAACTTGCATTTTGACCCTACC
TAGTCCTTGAACTTGCATCAAATGTGCAAATTTGGTCCTGACCAATCACAGAGCGACATGTGGACATGTGGGTGCCGACC
CGGTCAGCGTGCGACATTTTGCAAAGAGGCCCCTTCCTTTGGTTTGAATCTACCCGCAGGCCACGAAAACACCTAAATTA
ATTTTTAAAGGAGACAAACCCGCAGCTCACTCCCTCTCTGTTTGCCTGCATTTGTAACTGTGCTACGCCAGCTCGATCGA
TCGACAGAGCAATGCATTTGCGGATTTGAACAATGACAAGAGTGTGAATCATTTGCTCATTTGAATCAAGTTGACAGAAC
AACATCTTGTGATCTTTTTTCTTGCAAACAACCAAATCAGAATCAGATGCGCTAGCTACAACGGCCTTGAGGATTGAGAA
GAAGAGCAAATCTCCAAATTTACAGTCAAGAGAGAAAAGAAAAGGAAGAACAGTCAATTGATTAGACCTTCTCATCAGCA
CCCCAAAGAACAAACCAAATCAGCTAAAAACCTAACAAAGCGCTATGCATCCATCATTGCGTCCCTAGCCTAGCTCGTCG
CTTTCCATGCACGACCAAGCGCTCGATCGCCCGCCGTATC
>chr5A_1808
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-----------------------------------------------GTTTGGTTCTAGAACTTGCATTTTGATCCTACC
TAGTCCTTGAACTTGCATCAAAGGTGCAAATTTGGTCCTGGCCAATCACAGAGCGACATGTGGACATGTGGGTGCCGACC
CGGTCAGCATGCGCCATTTTGCAAAGAGGCCCCTTCCTTTGGTTTGAATCTACCCGCAGGCCACGAAAACACCTAAATTA
ATTTTTAAAGGAGACAAACCCGCAGCTCACTCCCTCTCTGTTTGCCTGCATTTGTAACTGTGCTACGCCAGCTCGATCGA
TCGACAGAGCAATGCATTTGCGGATTTGAACAATGACAAGAGTGTGAATCATTTGCTCATTTCAATCAAGTTGACAGAAC
AACATTTTGTGATCTTTTTTCTTGCAAACAACCAAATCAGAATCAGACGCGCTAGCTACAACGGCCTTGAGGATTGAGAA
GAAGAGCAAATCTCCAAATTTACAGTCAAGAGAGAAAAGAAAAAGAAGAACAATAAATTGATTAGACAGAT---------
---CAAAGAACAAACCAGATCAGCTAAAAACCGAACAAAGCGCTATGCATCCATCATTGCGTCCCTAGCTTAGCCCGTCG
CTTTCCATGCACGACCAAGCGCTCGATCGCCCGCCGTATC
>SNPs
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------------S--------------------------------------------S----------------------
-------------------------------------------------------S------------------------
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-----------------------S--------------------------------------------------------
---------------S--------------------------------S-------------------------------
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---------------------------------------------S----------------------------------
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--------------------------------------S-----------------------------------------
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-S-------------------------------------------------------------------S----------
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------------------------------------S-------------------------------------------
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---S----------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-------------------------S----------------------------S-------------------------
---------S--------------------------------S-----------------SSSSSSSSSSSS--S--S--
----SS-----------------------------S--------------------------------------------
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-----------------------------------S--------------------------------------------
-------------------------------------------------------------------------S------
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--------------------------------S-----------------------------------------------
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>forward_576
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----------------------------------------------------------------------------CTCG
ACAAGCATCCTCCCAA----------------------------------------------------------------
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>reverse_2353
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--------------------------------AAACAAAGCGCTATGCATCCA---------------------------
----------------------------------------
