>input_sequence_80561
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---------------------------------------------------ATGGCGGGCGCGAAGTCGTCGGTTCTGCT
CGACGTGAAGCCGTGGGACGACGAGACCGACATGGCCAAGCTCGAGGAAGCCGTACGGAGCGTCGCCATGGAAGGACTGA
CAT--GGGGTGCATGTATGTTTGACTTCCTTCTTTCTTTCGAAGCTATGTTTGACTTCCTTGCTACCTC------TTAAT
CAACAACTTGATTTTGGTTAAGTATCTGAACTA--TGCCACCTTGTTCTCGCAGCCAAGCTTGTTCCGGTTGGGTACGGG
ATGAGCAAGATGCAGATCATGCTGACGATCGTCGACGATCTCGTGTCCGTCGACGACCTCATCGAGGACCGTCTCTGCGC
CGAGCCAGTCGACGAGTTCGTGCAGAGCTGCGACATTGCCAGCTTCAACAAAATATGTGC--------------------
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GTGCC-TAATCCGGTCGTTCAGAATATTTTAG------------------------------------------------
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>chr5A_1_TraesCS5A01G378500
TTTCATTATGTTTGAGATGATTTGTACTTTCAGTGAACTTTTAGAATAATACTCCTCCGTCCTGTAATATAAAAGCATTT
TGACACTAATCTCAGTCCTCTAAAAAAAACTCTGAACTAAGCTCAAAGGTTTTCGTTTTGTTTTGAAAGGAACTAGTCTC
TGAGGTTTGAAAAGCGAGGACACGTCGCTGGCAAGGCAAGCCGTTGACTCGTTCCATCTTCACCGGGCTGTACCAAGCAG
AAGACCGTGATGACATCCACACGCACACAAAAAAAGATAGACCGTGACGACGATGTGATCAAATGGGAGCAACCAAAACA
CCGCTACTTTCCGGACATCGTCAGCAAAGACCACGCTAGGATGGAAATATACGGAACGTTTGAATCGTCGAAAGTTGGTT
TGGTATTTTCACAGAACGTTTTGACTCCCGAGAGCAATTTTCATTGTTTTTTAGTTTGGAGGATTGCGTGCCGAACGTGG
AAGTTGCCTTGCATCAACCTCGACGCGGCCGTACGCCTTTCCGTCCAACCCGGGCGTGCAGTGCAGTGCACGCACCGTGG
ATCGATCGTCCACGAGGCGGGACCTGTCCGGATTCGAGTTAGGCAC-GCCCGATCGACGCACGCACGGAGCCCTCCCGAG
CCGTGACGCCGTCGGCCTTCTCGATCGGTTGCATGCCTATTTAATTTG---------ATCACGTCACGTACGCCAAACGC
TCCAAACCCTAGCCG-----------GAACCGAGCTC------------------------CGTCGCCTTCGTCGTAGTC
GGTCGATTCGCGGCGGCTCCACCGGTGAGTCTCCTCCCCTGGAG----TAGTCTTCCA----------------------
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-------------------------------------------------------------------------------A
GAAGTCTCCATCCGTAGCGTACTAGCGTTTGCTTTGCGTCACGTCGCCTTTACCTTGTCGACACCCAAGTCCACCACCAA
ACCGCCGCCATCGCCTGCCCACGTATTTTTGGAGATAAACAATGT-----------------------------------
-----------------------------------CGCCGTTGTAGTTTGCTTT--------------------------
--ATTTTCTGACACTTGTGTAACCCTACTCACTATCT---ACAGAGAATCGATGGCGGGCGCGAAGTCGTCGGTTCTGCT
CGACGTGAAGCCGTGGGACGACGAGACCGACATGGCCAAGCTCGAGGAAGCCGTACGGAGCGTCGCCATGGAAGGACTGA
CAT--GGGGTGCATGTATGTTTGACTTCCTTCTTTCTTTCGAAGCTATGTTTGACTTCCTTGCTACCTC------TTAAT
CAACAACTTGATTTTGGTTAAGTATCTGAACTA--TGCCACCTTGTTCTCGCAGCCAAGCTTGTTCCGGTTGGGTACGGG
ATGAGCAAGATGCAGATCATGCTGACGATCGTCGACGATCTCGTGTCCGTCGACGACCTCATCGAGGACCGTCTCTGCGC
CGAGCCAGTCGACGAGTTCGTGCAGAGCTGCGACATTGCCAGCTTCAACAAAATATGTGC--------------------
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GTGCC-TAATCCGGTCGTTCAGAATATTTTAGCTAGCTGCATCTTTC--------------TGCTTTCCCTTCGACTAAA
CCTGTCTTATTGTCGCAGGAAATTACTCGTCGGATGCGAAGAAGCAGAATGTGATTTCGCAGCACAAGATTTAC--TAGC
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---TAGTTGATTTTCTGGTTACCGAGTTATTCTTAGTTAGAGTAATACTTTGTTATTGTT-TCGTCAGTCGTCATGTGCT
--------------TCCTTG---TATTCGTTGTTTCGAGGAAGCCCTCTTTCCTCTGTGCAAGACTCTGTTTTTTTTTTT
TGCTTCTATG-AAAGGTATTTAATGTGG----ATGGTCAACTCGTTCCTGAGCACGATGAGAATATACGGCATGTCATTG
TCAAACATACGAATCCGCGGCTGCGAGATGGCTTGACGAGAGTCAAATAATCAGCATCGAAGTGCCAAAAGGTCACCAGC
TTACATTTGCGCGTTCATCAGTTTGTTTTTCTCGCCAAAGGGAAAACAAAGTTTGTCTACGACACCGCGGAGGGGGGATG
CTTTGCGGCTGTCCACTCAAATCCCCACTTTTCTTTCATTTCATCTTTGTGTCCTTCCTTACTTTTCATTCATACCCTCC
TCGTCCAATGTCCTCGACATCGTAGGATGTTTGCGGCCCGCAAATGCGCCTCCACTCCTTGGACTATAACGCCGTCACAA
CCATCCCTCCGTAGGCAGGTACCCCCCCCCCCCTCCTCCTACCAACGACGTCATGGCCGACACCACAATCGATCAATTGA
CATTGAGCTTTTTCTTTAACTTATCGTTGTTTTCTGGAGTACATGGCGGGGTACTTGATGATCGAGGATGAGTTGATGTG
CGAAGCGTGGTTGGTCATAGATGCGGAGTTTATACGGCATCCATCAACGCAATGTGAAGTCGATATCGCATCAATGATAT
GCCATCTGCAACTCGGTCATGAAGTTTCACACTTGTCAAGGAGGAGTCCAAACACAAGAGTACGGCTACACAACCCACCA
GGGAAGTTGAAGCGGAAACGAAAGAAAGGTGAAG
>chr5B_550
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---------------------------------------------------------------------ACGCGCCGTGG
ATCGAATGTCCACGAGGCGGGTCCTGTCCGGATTCGACTTAGACAC-GCCCGATCGTGGCACGCACGGAGCCCTCCCGAG
CCGTGACGCCGTCGGCCTTC----TCGGCTGCATGCCTATTTAATTTGGCGGGGGCTCAC----CACGTACGCCAAACGC
TCCAAACCCTAGCCGCCCCCTCTCCGGAACCGAGCTCGGTCGCGGCAAC--------CGTACGTCGCCTTCGTCGTAGCC
GGTCGGTTTGCGGCGCCTCCACCGGTGAGTCTCCGCTCGCCTCCCCTATAGTCTTCCATCCGTCG---------------
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----------------------TAGCGTTTGATTTGCGTCACGTCGCCTTTACCTCGTCGACA-CCAAGTCCACCATCAA
ACCGCCGCCATCGCCTGCACACGTGTTTTCGGAGATAAACAATGAAACATGTCTCAATGCTGGGTCAAATCTTTTTTTTT
TTGTAGTAATAAGATCAGAAGCTCTTTTTTCATGGCGCCGTTATAGTTTACTTAATTTTCTTTTTTGAAAAAAAAACACT
TAATTTTCTGACACTTGTGTAACCCTACTTACTATTTACAACAGAGAATCGATGGCGGGCGCAAAGTCGTCGGTTCTGCT
CGACGTGAAGCCGTGGGACGACGAGACCGACATGGCCAAGCTCGAGGAAGCCGTACGAGGCGTCGCCATGGAAGGGCTGA
CAT--GGGGTGCATGTATGTCTGGTTTCCTTGCTGCTAGCTCTGAATTACGCGGCTGTCTATCCACTCGTGAAATTAAAT
CAAGCACTTAATTTAGGGCGCTTATCTGGATTGCGTGCCACCTTGTTGTCGCAGCCAAGCTTGTTCCGGTTGGGTACGGG
ATGAGCAAGATGCAGATCATGCTGACGATCGTCGACGATCTCGTGTCCGTCGACGACCTCATCGAGGACCATCTCTGCGC
CGAGCCCGTCGACGAGTTCGTGCAGAGCTGCGACATTGCCAGCTTCAACAAAATATGTAC--------------------
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GTGCCCTGATCTGCTCATTCAGAAGATTAATTTTACCTGCATCTTTGATAGATTTTTGCAGTGCTTTCGCTTCGACTAAA
CCTGTCCTATTGTTGCAGGAAATAACTCGTCGCATTCGAAGAAGCAG---TTGATTTCGCAGCACAAAATTTCTAGTAGC
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---TAGTTGGTTTTCTCGTTACCGAGTTGTTCTTAGTTAG---AGTACTTTGATACTGTA-TTGTCAGTCGTCACGTGCG
CAACTACATGTCCATCCTTG---TATTTGATGTTTCGAGGAAGCCCTCTGTGGAAGG---------CTGTTTTTTTT---
--CTTATATG-AAAAGTATTTAATGTGA----ATGGTCAACTCGTTCCTGAGCACGACGAGAAAATACAGCATGCCATTG
TCAAACATACGAATCCTCGCCTGCGAGATGGCTTGACGAGAGTCAGAT--------------------------------
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>chr5D_550
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---------------------------------------------------------------------ACGCGCCGTGG
ATCGATCGTCCACGAGGCGGGTCCTGTCCGGATTCGAGTTAGACACCGCCCGATCGTGGCACGCACGGAGCCCTCCCGAG
CCGTGACGCCGTCGGCCTTC----TCGGCTGCGTGCCTATTTAATTTGACGACGCTCATCACGTCACGCACGTCAAACGC
TCCAAACCTTAGCCGCCCCCTCTCCGGAACCGAGCTCGGTCGCGGCAACCGTACGTACGTACGTCGCCTTCGTCGTAGCC
GGTCGATTTGCGGCGCCTCCACCGGTGAGTCTCCGCTCGCCTCTCCTTCCCCGTAGAGTAGAACTCGGGAGAGTATCCTG
TGATACAGGAGCATAGGTGCTCCCATGATACGGACTTCTGGACCCTCGGATCTCAGATCCAACGACACACGAGGAGCTTC
CGTAGCTGCTGTACTTGCGCGCATTTTAGATTCTACATGGCCTTTTTTGCAAAAAGGTGTATCATTTCACAGGAGCTTTT
GGATCTGAGATCCAACGGCCGAGCTCGCATGGGAGCGCCTAACCTTAGGTGCTCCCGGAGCACCAGATATTTTTCCAGTA
GAACTCTCCATCGA--------TAGCGTTTGCTTTGCGTCACGTCGCCTTTACCTCGTCGACG-CCAAGTCCACCATCA-
-------------CCTGCCCACGTA---TTGGAGATAAACAATGAAACATCTCTCAGAGCTGGGTCGAAGCTTT------
------------------------TTTTTTCATGGCGCCGTTATAGATTTCTTAATTTTCTGACATATAACCCCACAAGA
CT------------------------------------------------GATGGCGGGCGCGAAGTCGTCGGTTCTGCT
-GACGTGAAGCCGTGGGACGACGAGACCGACATGGCCAAGCTCGAGGAAGCCGTGCGAGGCGTCGCCATGGAAGGATTGA
CATGGGGGGAGCATGCATGTCTGGTTTCCTTGCCGCTAGCTCTGAATTACGCGGCTGTCTATCCACTCGTGAAATTAAAT
CAAGCACTTAATTTAGGGCGCTTATTTGGATTGCGTGCCACCTTATTCTTGCAGCCAAGCTTGTTCCGGTTGGGTACGGG
ATGAGCAAGATGCAGATCATGCTGACGATCGTCGACGATCTCCTGTCCGTCGACGACCTCATCGAGGACCATCTCTGTGC
TGAGCCCGTCGACGAGTTCGTGCAGAGCTGCGACATTGCCAGCTTCAACAAAATATGTACTCCCTCTGTTTCTTTTTAGT
TTGCATATAAAATTTGGTCAAAGTCAAACTTTGTAAAATTTGACTAGCTTTATAAGAAAAGATATTAACATCCACACTAT
ATAGTCAATACTATTAGATGCATGATGAAATTAATTTTCATAACATATAACTTTAGTATTGTAGATGTTAATACATTTTT
TCTATAAAGTTAGTCAAACTTTACAAAGTTTGACTTTGACCAAATCTTATATGCGAACTAAAAAGAAACGGAGGGAGTAT
GTGCCCTGATCTGCTCGTTCAGGATATTTTAGCTACCTGCATCTTTGATAGATTTTTGCAGTGCTTTCGCTTCGACTAAA
CCTGTCCTATTGTTGCAGGAAATTACTCACCGCATTCGAAGAAGCAGAATTTGATTTCGCAGCACAAGATTACTACTCCC
TCCGTCCCATAATATAAGAGCGTTTTTTCCACTAGTAAAGTATAAAAAATGCTCTTATATTATAGGAGAGAGGGAGTAGC
TATTAGTTGGTTTCCTGGTTACCGAGTTATTCTTAGTTAA--TAGTACTTTGTTATTGTTTTTGTCAGTCGTCATGTGCT
--------------TCCTTGTACTATTCGTTGTTTCGAGGAAGCCCTGTTTCCTCTGTGGAAGACTGTC-------TTTT
TGCTTCTATGAAAAAGTATTTAATGTGATGAAATGGTCAACGAGAATAT----------------TACGGCATGCTATTG
TCAAACATACGAATCCGCGGCTGCGAGATGGCTTGACGAGAGTCGAATAATCAGCATCGAAGTGCC-AAAGGTCACGAGC
TCACACTT--GCGTTCATCAGTTTGCTTTTCTCATGAA----AAACAAAGGTTTGTCGACGACA----------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S------
---------------------S--------------------S-------------SS----------------------
--------------------SSSS----S---------------------------------------------------
------------------------------------------------------------------------------S-
--------S------S------------------S-S-SSSSSS------------------------------------
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---S--------SSSSSSSSSS---------------------------------S-------S------------S---
--------------------------------------------S-----------------------------------
------------------------------------------S------S---S--------------------------
-----------------------------S-----S--------------------------------------------
---------------------------------------------------------SS---------------------
--------------------S--SS------SS-S--SS-SSS-SSS-SSSS-S--SS--SS-S--SSS-------S---
---SS----S----S--SSSSS------S-S-S-----------------------------------------------
----------------------------------------------------------------------S---------
------S---------------------------------------------------S---------------------
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-------S---S-S---------------------S----------S---------------------S-----------
------S------S------------------S--S--------------S---------------------SS------
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---------S------------------------------SS--S-----------------S-----------------
-----------------------------------------------------------S--------------------
--------------S------------S-----------------------------S-----S----------S-----
------------------------------------------------------------------S---------S---
-S---S--SS---------------S-------SSS--SSSS---SS--S-------S------SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_347
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-------TTTCCGGACATCGTCAGCAA-----------------------------------------------------
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>reverse_2728
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-------GCTGTCCACTCAAATCCCCA-----------------------------------------------------
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