>input_sequence_80522
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----------------------ATGGCCTCCAAGACCGCGGTCGTCGCCTTCACACTCATCGCAGCCCAG----------
-CTCCTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTCCGGCTACCACGA------CCGGTACTACCACCGTGC
CTTCAGGATCCGCGACGGACGTCCCGGCGCTCCCGTTCCCGGGGGAGGGCGAGGTGGCCGAGGCCGCGGCTGACTGCTGG
AAGGTAGTGCTGCAGGCGGAGAGCTGCGCGGTCGACATCCTCAAGTGGCTCGCGTCCCGGCAGCTCGCCGGCCGCGTGAG
CCTGGCGTGCTGCGGTGTGCTCCAGAGGGTCGGCGACAGGTGCCTCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGAC
TCTACGCTCCCTTTGTGAGTCACGCGTGCGGTATCCCCAAACGGGCAACGACCCCCAACGGCCGCCAGTG---A------
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--------
>chr5D_1_TraesCS5D01G438000
CGGTAAGTCGCGCACCACATGCGCATCATTTGTCGCAATTAGCAAGCTTTGCTGGGTTCTTTCACCACGTGCGGTAGGAA
TGGAGGGTTGTTTGTGCTTTTACTTTTCGATTCGTTTTTTCAAAACAAATGCCTATTAAATTGTGTGTTTAAATTATAAA
CCAGCTTTATCGTTGCGTTCCCCGCGTATAGATCTTCAAAACTATATGCCGTGTCGA----TTGGTTTTGATGTAATATT
TTTCGAACACAACTTGTGCTCATTGTTAGAGTTGTGTCGAATATTGTGTACAAGGTAAGTTACACTTGGACTTGTACTTG
CATTGTGTTTAGATAGGATATGAAGTCCTGTCCAAATAGGACACTTGGTATCCTAGGCCTCTCATACATAGCGGGATAGA
CACACGATATAACCTATGCCAACATAATAACACAAGAACGCAGGGGAGCCGGCGGCATGTGCCGACGTCCAGGGCGACCG
GGTGCGGTATTGTAGCGGTGTCATGGAGAGGAGCGTCTATAGTCAGGCCCCAGGGATGTAGTCATATCGGTGAACCTCGT
TAACAAATCTAGGTGACATGCCTCGTGTGATTGCTCTAACACTCCTAACATGAACTGACATGTACTCGGTACTCCCAAGT
AGTTATAGTCCATACAAGCTTCCAAAGCGGGGCCTG--------------------------------------------
--------CAGTTAACAATCAACTCGTGTAAAAAAACTCCGAGAATTCATTCGTTTCTTTGTGAGGAATTAACACCAAGA
GATTAACTCGATACGGTACTGCTAACATAACCCATTTTGACGAAATTAACTCCATCCGCGTGAAACTCCAACGCAATTAA
GCTCTTGTCGACTGTTAGCCCATGCGCTCCACATATGGCCATCCTTCCACCGTACCCGGCCCCTATATAACACTTGAGCA
TTTCCCTCGATTCCGACATCTCTCCACACGCCATTGTTTACTTCGACCCATAGAGCAACGGAAACAGAAAGTGTAGCTGA
CGTTGAGCAAACA------GCAATGGCCTCCAAGACCGCGGTCGTCGCCTTCACACTCATCGCAGCCCAG----------
-CTCCTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTCCGGCTACCACGA------CCGGTACTACCACCGTGC
CTTCAGGATCCGCGACGGACGTCCCGGCGCTCCCGTTCCCGGGGGAGGGCGAGGTGGCCGAGGCCGCGGCTGACTGCTGG
AAGGTAGTGCTGCAGGCGGAGAGCTGCGCGGTCGACATCCTCAAGTGGCTCGCGTCCCGGCAGCTCGCCGGCCGCGTGAG
CCTGGCGTGCTGCGGTGTGCTCCAGAGGGTCGGCGACAGGTGCCTCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGAC
TCTACGCTCCCTTTGTGAGTCACGCGTGCGGTATCCCCAAACGGGCAACGACCCCCAACGGCCGCCAGTG---ATAGCCG
GTCGT----GTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCTC----------------------------
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-----------------------------------TGTTTGCACTGATATTTCTGTCTTTTTAAAGTAGTTTA---TACA
TTTTTGAAGAAAAGACGCAATACAATAAGGATATGAAAGCCGGCCATAC-------------------------------
--------------------------------------------------------------AGT-----------AGAT
GTCTTTATTTTATTCCTTTGAGAGCCAACATGACGTGGTTTATAGG----CTTTGATTCGCAGGATTGCAAAAACGTGGG
AATATGAAACATGTATGATTGAAATGACATGCCAATTGCATTATTATGGATTTGAGTTTGTTTAATGTGTTTAATTGTAT
CACGGGAAGAACTAAGGATTTTTTCCAAGAGGTTGGAGTGGATGCTAAACTTCCTATGAAATATTGTACAAATGAATCTT
TAAGGAAACT----------------------AATCGAACGGCCAATGTAGGAAAGATTCTCAAGGATTCTA-----TGA
AAAATCTTATGAAAACCCTTTCCCTTAGTTTTAATCTATTATACCACGCTGCTGCGGCGACAGAGCCAGCTCATGGACAA
AGCGAGCAGGGTGGCGGTCGAGGGGAAATAGATTATAATTAGTAAAA-CTGATGAAAT---AAATATTTGTATTTGCAAA
TTAGAACAAAATATAAATTT-TATATTTGCTAATAGCGCTAGCAGTGTGTGCTCTTGTAGACCACCCTATTTGTTTTGAT
CTATAG--AAGTTTTATTTTGCATTTCTAATATTTATAAGCTAGAATTTTATTCTAGTTTTTGGGGGCCTACAAATATGT
TTCTAAATTTTTTCAAAATAAAGAGCTGCATGAAGCTTGGGAGTACAAAATCCTCACCCATCGATCCTTGCATCTAGCAA
CTT--AATTCTTCATCCACCATCAGCTAAACATATGCGGTCACATGTTTCTCATACCAATATACTTGCCATTGACCGACA
GAGAAAAGCATATCTTTTAGGTCCGCACCAGCTCCGACTCAAGGGCCCAAAAATTAGGACCTCATTTGTAACTATTTCAA
GATGGCGG
>chr5A_1
CGGTAAGTCGCGCAGCACATGCGCATCATTTGTTGCAATTAGCAAGTTTTGCTGGGCTCTTTCACCACGTGCGGGAGGAA
TGGAGGGTTGTTTGTGCTTTTACTTTTCGATTCGCTTTTTCAAAACAAATACCTATTAAACTGTGTGTCTAAATTATACA
CCAGTTTTATTGTTGCGTTCCTCGTGTATAGATCTTCAAAACTATATGCCGTATCGTTAATTTGGTTTTGATGTAATATT
TTTCGGACACAACTTGTGCTC-----------------------------------------------------------
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--------------------------------------------CTAACATGAACTGACCTGTACTC-------CCAAGT
AGTTATAGTCCATACAAGCTTACCAAGCGGGGCCTTAAGGCCTCGCCACGGAGGCACGAACCACTGCGAGTTACAGTTCA
AGGAGTTTCAGTTAACAAGTAACTCGTGCAGACTAACTCCGAGAATTCTTTCGTTTCTTTGTGAGGAATTAACACCAAGA
GATTAACTCGATACGGTACTGCTAGCATAACCCGTTTTGATCAAATTAACTCCATCTGAGAAAAACTCCAACGCAATTAA
GCTCTTGTCGACTGTTAGCCCATGCGATTCACGTATGGCCATCCTTCCACCGTACCCGGCCCCTATATAACACTTGAGCA
TTTCCCTCGATTCCGACATCTCTCCACACGCCATTGTTCACTTTGATCCATAGAGCAACATAAGCAGAAAGTGTAGCTGA
CGTTGAGCAAACA------GCAATGGCCTCCAAGACCGCGGTCGTCGCCTTCACGCTCATCGCAGCCCAGCTCCA-----
---CCTCCTCGCATGCACTCCAACCACGGCGATATCGATCCCTCCGGCCACCACGA------CCGGTACTACCACCGTGC
CTTCAGGACCCGCGACGGACGTCCCGGCGCTCCCGTTCCCCGGGGAGGGCGAGGTGGCCAAGACCACGGCTGACTGCTGG
AAGGTAGTGCTGCAGGCGGAGAGCTGCGCGGTCGACGTCCTCAAGTGGCTCGCGTCGCGGCAGCTCGCCGGTCGCGTGAG
CCCGGCGTGCTGCGGTGTGCTCCAGAGGTTCGGCGACAGGTGCCTCCGCGACCTCTTCCCCCGCTCTGCGGTCGCCCGAC
TCTACGCTCCCTTTGTCAGTCACGCGTGCGGTATCCCCAAACGGGCAACGGCCCCCAGCGGCCGCCAGTG---ATAGCCG
GTCGT----GTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCTC----------------------------
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>chr5B_671
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----------------------------------TG--------------------------------------------
--------CAGTTAACAATCAACTCGTGTAGACTAACTCCGAGAATTCATTCGTTTCTTTATGAGGAATTAACACCAAGA
GATTAACTCGATACGGTACTGCTAACATAACCCA-TTTGATGAAATTAACTCCATCCGAGAGAAACTCCAACGCAATTTA
GCTCTTGTCGACTGTTAGCCCATGCGATTCACATATGGCCATCCTTCCACCGTACCCAGCCCCTATATAACACTTGAGCA
TTTCCCTCGATTCCGACATCTCTCCACACGCCATTGTTCACTTCGATCCATAGAACAACAGAACCAGAAAGTGTAGCTGA
CGCTGAGCAAACA------GCAATGGCTTCCTAGACCTCGGTCGTCGCCTTCACGCTCATGGCAGCCCAGCTCCTCGCCT
CCTCCTCCTCGCATGCACTCCAACCACGGCGATATCGATCCCTCCGGCTACCACGATCGTTGCCGGTACTACCACCGTGC
CTTCAGGATCGGCGACGGACGTCCCGGCGCTCCCGTTCCCGGGGGAGGACGAGGTGGCCGAGGCCGCGGCTGAATGCTGG
AACGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAAGTGGCTCGCGTCCCGGCAGCTCGCCGGCCGCGTGAG
CCCGGCGTGCTGCGGTGTGCTCCAGAGGGTCGGCGACAGGTGCCTCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGAC
TCTACGCTCCCTTTGTCAGTCACGCGTGCGGTTTCCCCAAACGGGCAACGCCCCCCAGCGGCCGCCAGTG---ATAGCCG
GTCGT----GTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCTC----------------------------
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>chr5A_699
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----------------------------------AACTCGGAGAATTCTTTCGTTTCTTTGTGAGGAATTAACACCAAGA
AATTAACTCGATACGGTACTGCTAACATAACCCGTTTTGATCAAATTAACTCCATCTGAGAGAAACTCCAACGCAATTAA
GCTCTTGTCGACTGTTAGCCCATGCGCTCCACATATGGGCATCCTTCCACCGTACCCGGCCCCTATATAACACTTGAGCA
TTTCCCTCGATTCCGACATCACTCCACACGCTATTGTTCACTTCGATCCATAGAGCAACAGAAGCAGAAAGTGTAGCTGA
CGTTGAGCAAACA------GCAATGGCCCCTAAGACCGCGGTCGTCGCCTTCACGCTCATCGCCGCGCAGCTCCT--CCT
CCTCCTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTCTGGCTACCACGA------CCGGTACTACCACCGTGC
CTTCAGGATCGGCGACGGGCGTCCCGGCGCTCCCGTTCCCGGGGGAGGACGAGGTGGCCGAGGCCGCGGCTGAATGCTGG
AATGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAAGTGGCTCGCGTCCGGGCAGCTCGCCGGCCGCGTGAG
CCCGGCGTGCTGCGGCGTGCTCCAGAGGTTCGGCGACAGGTGCCTCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGAC
TCTACGCTCCCTTTGTCAGTCACGCGTGCGGTATCCCCAGACGGGCAACGACCCCCAGCGGACGCCCGTG---ATAGCCG
GTCGT----GACCTGCCATGTGGCATCTGAAAACTGAGAATAATTCAGGGTC----------------------------
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-----------------------------------TGTTTGCACTGATATTTCTGTCCTTTTAAAGCAATACCTTTTACA
TTTTCGAAGAAAAGACGCAATACAATGAGGATATGAA-GCCGGCCATAC-------------------------------
--------------------------------------------------------------AGTATATATGATTGAGAT
ATCTGTATTTTATTCCTTTGAGAGCCAACATGACATGATTTATAGGGCCTCTTTGTTTGGCAGGATTGCAAAAATGCATA
AATAGGAAACATGTATGCTTGGAATGACCTGCCAATTGGATTATTATGAATTTCAGTTTGTTTG---------ATTGTAT
CACAGGAAGAACTAAGGATTTCTTCCAAGAGGCTGGAGTGAATACAAGAATTCCCATGAAATGTTGTAAAA-TGAATCCA
TAGGAGAAATTTCAATAGGATTCAATCCTACGAATCGAACGACCAACGTAGGAAAGATTCTCAAGGATTCTAATCCTTGA
GAACTCTTATGAAAATCCTTACCCTTAGTTTTAATCTATTATACCACGCTGCTACCGCGACAGAACCAGCTCATGGACAG
AGCGAGCAGGGTGGCACTCCAGGGCAAATAGATTATAATTAGTAAAAACTGATGAAAT-AAAAATATTTGTATTTTCAAA
TTAGAACAAAATACAAATTTCTATATTTGTTAATAGCACTAGCAGTGTGTGCTCTCGTAGACCACCCTATTTGTTTTGAT
CTATACAAAAGTTTTATTTTGCATT-CTAATATTAATAATCT--------------------------------------
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>chr5B_699
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----------------------------------AACTCCGAGAATTCATTCGTTTCTTTGTGAGGAATTAACACCAAGA
GATTAACTCGATACGGTACTGCTAACATAACCCGTTTTGATCAAATTAAC-CCATCTGAGAGAAACTCCAACGCAATTAA
GCTCTTGTCGACTGTTAGCCCCTGCGCTCCACATATGGCCATCCTTCCACCGTACCCGGCCCCTATATAACACTTGAGCA
TTTCCCTCGATTCCGACATCTCTCCACAGGCCATTGTTCACTTCGATCCATAGAGCAACAGAAGCAGAAAGTGTAGCTGG
CGTTGAGCAAACA------GCAATGGCTCCCAAGACCGCGGTCGTCGCCTTCACGCTCATCGCAGCCCGGCTCCTT----
----CTCCTCGCATCCACTCCAACGACCGCGATATCGATCCCTCCGGCTACCACGA------CCGGTACTACCACCGTGC
CTTCAGGAACCGCGACGGACGTCCCGGAGCGCCCGTTCCCGGGAGAGGACGAGGTGGCCGAGGTCGCGGCTGAATGCTGG
AACGCGGTGCTGCAGGCGGAGCGCTGCGCGGTCGACGTCCTCAAGTGGCTCGCGTCCGGGCAGCTCGCCGGCCGCGTGAG
CCCGGCGTGCTGCGGCGTGCTCCAGAGGTTCGGGGACAGGTGCCTCCGCGACCTCTTCCCCCACTCTGCGGTCGGCCGAC
TCTACGCTCCGTTTGTCAGTCACGCGTGCGGTTTCCCCAAATGGGCAACGACCCCCAGCGGCCGCCAGTG---ATAGCCG
GTCGT----GTTCTGCCATGTGGCATCTGAAGACTGAGAATAATTCAGGCTCCATTGCAGAAAACAACGATTATCAAGGC
TTAGAGATTTCAACTTCTTTTCCTTTTTCTAAATAATTCTTTCTTTCATTTTTGAAGAAATTAAAAGATGCAATACAATA
AGGAAATGAAGCCGGCCATGCGGTATGTATGATCATACAAGAGCCCTTGGTTGAAATTTCTGTACTTTGTTCCCTTGAGA
GCCAACATGGCATGGATCAGTTCTTTTGGCAGCTTAAAAAATAAGCCATCTCCTCCCCAGCTTTTCTCATAAGCTGTCTT
CCTCATTCATTGAAGACTGATAATAACTCAGGCTCTGTTTGCATTGATATTTCTGTCTTTTTAAATCAATACTTTTTATA
TTTTCGAAGAAAAGACGCAATACAATAAGGATATGAA-GCCGGCCATGTCCCTCCGTCCCAAAATAAGTGTCTTGAGCTT
AGTACAAATTTGTACTAGAGCTAGTACAAAGTTAAGACACTTATGATTGAGACGGAGAGAGTAGTATATACGATTGAGAT
GTCTGTATTTTATTCCTTTGAGAGCCAACATAACATGATTTATAGGGCCTCTTTGTTTTGCAAGATTGCAAAAATGCATA
AATAGGAAAGATGTATGGTTGGAATGACATGCCAATTGGATTATTATGAATTTGAGTTTGTTTG---------ATTGTAT
CACAGGAAGAACTACGGATTTCTTCCAAGAGATTGAAGTGAATGCTACAATTCCCATGAAATGTTGTACAAATGTATCCT
TAGGAGAAATTCCTATAGGATTCATTCCTACGAATCGAACGACCAATGTAGAAAAGATTCTCAAGGATTCTAATCCTTGA
GAACTCTTATGGAAATCCTTTCCCTTAGTTTTAATCTATTATACCACACTGCTACGGCGACAGAGCCAGCTCATGGACAG
AGCGAGCAGGGTGGCGGTCCAGGGCAAATAGATTATAATGACTAAAA-CTGATGAATTAAAAAATATTTGTATTTGCAAA
TTAGAACAAAATACAAATTTCTATATTTGTTATTAGCGCTAGCAGTGTGTGCTCTCGTAGACCACCCTATTTGTTTCGAC
CTATACAAAAGTTTTATTTTGCATT-CTAATATATATAAGCGGATTTATTCTA----TTTTTGGGGGCGTATAAATGTGT
TTATAAAA-TTTTCATAATAAAGAGCTCCATGAAGCTTGGGAGTA-AAAATCCTCACCAATTGACCCTTATATGTAAAAA
AAAAAAAATCTTCATCCACCACCATTTAAACATATGCGGTCACATGTTTGTCATACCAATATACTTGGCATCGACCGACA
CAGAACAGTATACCTTCTAGGTCCGAACCACCTCCGATTCAAGGGCCCAGAAATTTGGATCACGTTTGTAA---------
--------
>chr5B_965
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------------------------------------------------------------GAAGCACAAAGTGCAGCTGA
CGTTGAGCAAACATACGTAGCAATGGCAGGCAAGATCACGGTCGGCACCTTCACCCTCCTCGCGGCGCAGCTCCTC----
----ATCCTCACGTCCACTCCAACGATGGCGATATCCATCCCGCCGGCTACCACAA------CTAGTACTACC---GTGC
CGTCGGCTCCCGCGACGGACGTGCCGGCTCTCCCGTTCCCGGGCGAGGGCGAGGTGGCCGAGGCCGCGGCTGACTGCTGG
AAGGTGGTGCTGCAGGCGAAGAGCTGCGCAGTCGACATCCTCGAGTGGCTTGTATCCCCGGAGCTCGCCGGCCACGTGAG
CCTGGCGTGCTGCAGCGTGCTGCAGAGGGTCGGCGACAGGTGCCTCCGCGATCTCTTTCCCGACTCTGCGGTCGGCAAGC
TCTTCCCTCCCCTGGTCAGTCACTCGTGCGGGATCCCCTTAGGG---ACAACCCCCGGCCGACGCCAGTAATAATAGCCG
GTCGTCGTCGTCCAGGCATGTCGCATCTCAAG------------------------------------------------
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>SNPs
--------------S------------------S------------S---------S-----------------S-----
----------------------------------S---------------S---------S-------S---------S-
----S-----S----------S--S---------------------------S---S-----------------------
-----S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-------SSSSSSS------
---------------------S-S--------------------------------------------------------
------------------------------S-SS----------------------------------------------
----------------------------------------S-----------------S-S-------------------
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--------------------------------------S-------S------------S---S----------------
------------------------------------------------------S-------------------------
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----------------S----------------------------------------S----------------------
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------------------------------------------------------------------S-S-SSS-------
----S--------------------------------S------------------------------------------
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----S-----------------------------S--S-----------------S--S---------------S-SSSS
----S------------S---S----------------S---------S--------------SSSSSSSSSS-------
---S-----------------S------------------S------S-S----S-------S---------------S-
--S-SS--S--------------------------------S--------------------------------------
S--S-----------S-------------------------------------S-------------------------S
-------------------S----S-------------------------------------------------------
-------------S---------------S-------------------------S------------------------
-----S-------------------S----------------SSSS-S--S-SSSSS-----------S--S----S---
--S----SS------S-----------S-----------------S------------S--S--S----SS--S--SS--
SSS----S-------------S--SS-----------------------S-----------------S---S--------
S----S--S---S---S--------S----S------S-----------S-----S---S-S-S-------SSSSSSSSS
SSSSSSSS
>forward_512
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------------TAGCGGTGTCATGGAGAGGA------------------------------------------------
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>reverse_2893
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------------TCTTTTAGGTCCGCACCAGC------------------------------------------------
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