>input_sequence_80518
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----------------------------------------------------------------------ATGGCCACCT
CGACCGCCGCCGTGCTGTCCCCGCCCACCGTTGCCGGGCTCCGCCTGGCGCCGTCCCATCGCGCGGCGGTCTCTTTCCGG
GGGGCCTCGTCGC---CGGCGAGGCGGTCCGTGGCGGCGCGGGCCGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCAC
GGGGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTGCCCGAGCAGA
ACGGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCATCCTCAAGTCCAACGACCCCGTCGGC
TTCAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGG
ATATGACCCACCCTTCTTTGGCTGA-------------------------------------------------------
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>chr5B_1_TraesCS5B01G256400
GCCTCCATCTGCCGCATGCTGATGTCGGCCTAATCATCGTCCCCCACCACCCGCGGTTGGTGTCGGGCACCCCTCCCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAGCTGAACTG--TTTTTT
TTTCAGTTGCCTTGAGATTAGGAAACGCGAAATTAAAAAAAAAATCTGAACTGCGAGGTTCATATACTGCACCCTGCACA
GCCACC-TCCTT-CGTGCCCTTGGCCTGCTGGGTGCTGGCCAGTTGGC----CATCCACGTAACTCTCGTGGGGCCCACA
AGCGACACGTCA------CAGTGCTGACTTGCGGTGGGAAGAGAAGAGAAGA-AAGAAAAGGTATGGCTTAGATACTTTA
TCCAGCACCCTCCAATGGCCACACGCCATGAGCACACCACGAAATCCCGCTCCCCTCCACCACTAACCTCGCATTCCCGC
GCCCCCACCATATCCCCCACGTCACCACCCCCCTATATACCCACACCGCCAAACACCACGTAGTACGTAGCGCCTGCCGA
GATCAAGAACTCGCCGCACGTTGGTCCTTGAA------CACCCACACAGCTCT-------A--GAGGGCCATGGCCACCT
CGACCGCCGCCGTGCTGTCCCCGCCCACCGTTGCCGGGCTCCGCCTGGCGCCGTCCCATCGCGCGGCGGTCTCTTTCCGG
GGGGCCTCGTCGC---CGGCGAGGCGGTCCGTGGCGGCGCGGGCCGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCAC
GGGGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTGCCCGAGCAGA
ACGGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCATCCTCAAGTCCAACGACCCCGTCGGC
TTCAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGG
ATATGACCCACCCTTCTTTGGCTGATCC---------GTCCCATGTCTCCCCTGCCTGGGTGCCGGCCGGAGCGGCTTGC
TGTTGTAATCTGCCGTGTTTTCATTAGTTCTATGTTATACGCTGATGGTGTGCTATCATGTTAGTACACTGATGGAGTAT
GTGAGATGGTGTACTATCATGTTAGTAATCTGGACAAGTAGTGCAACCGCGTGTGTGTATTGATGATTGCCACATGAGTG
ATTTTATCTCTCTCTTTCCCCATAGGGCCATAGTAGAAAGGCAATTTTACTATGCACGGGATATCCTGTGCATAAATCCA
TCGTCCGAGGTTGCTTTGCGATCCGTGCTACCTTTTCTTTTTACTGTTTCCGGAATTTGTCTTGCTTCAAAGCGCACGGA
CAGTGAAACAAGAAAAAATAAATCGAACACAACATTTGAAACGAGATAACTTCTTTTTTGCGAGAAAACTTTCAATTTAT
TCATCTTCTATCATGGCAATACAACGAACACCAGAAATAATAAAAACTACATCCAGATCCGCAAGCCACCTAGCGATGAC
TACAAGCACTAAAGCAAGCCGAAGGCACGCCGTCGTCATTGGT--CCTCCTTCGTCGAAGCCAGACAAAGCTTACTGTAG
TAAACAGTCAGAAAGTCGTTGTGCTAAGGCCCGATAGGACCAGCACAACAGAACAACAACCGTCACCGATGAACAGTAGC
GTAGATCGAAAGGATCCAACCTGAAAACACATGAACGTAGACGAACTATGACTAGATCCGAGCAAATCCACCAAGAACAG
ATCCACCAGAGACACACCTCCAGACGCTCACCAATGATA-------------------------------CACGGTAGAG
AAGCCAATCTCAACATCTATAGTTATACTCCTATTTTTTACAGGCAACTGACATGCGTCGCAATGGGGAC--ACATCTTT
TGTTCGCAAGCACCCTGATTTACCATCCATCTT--ATCATCAATACGATTACTAACCAGACGTAGACTCT-GCTGCCAAC
TGAATCAGTACTATCGTCAATATGATTACTTA
>chr5D_544
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---------------------------------------------------------------GCTGAACTGTTT-----
TTTTAGTTGCCTCGGGATTAGGAAACGCGAAAATTTAAAA----TCTGAACTGCGAGGTTCATATGCTGCGCCCTGCACA
GCCACCTTCTTCACGTGCCCTTGGTC-------TGCTGGCCAGTTGGC----CATCCATGTAACTCTCGAGGGGCACACA
AGCGACACGTCACAGTGGCAGTGCTGACTTGCCGTGAGAAGAGAAGAAG----AAAAAAAGGTATGGCTCAGATACCTTA
TCCAGCACCCTCCAATGGCCACACGCCATGAGCATACCGCGAAATCCCGCTCGCCTCCACCACTAACCTCGCATTCCCGC
GCCCCCACCATAT---------------CCCCCTATATACCCACACCACCAAACACCACGTA---CGTAGCGCCTACCGA
GATCAAGAACTCGCCGCACGTTGGTT------CTTGACCACCCACACAGATCCGAGGGAGA--GAGGACCATGGCCACCT
CGACCGCCGCCGTGCTGTCCCCGCCCACCGTGGCCGGGCTCCGCCTGGCGCCGTCCCCGCGGGCGGCCGTCTCGTTCCGG
G---------CGC---CGGCGAGGCGGTCCGTGGCGGCGCGGGCGGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCAC
GGGGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTCCCCGAGCAGA
ACGGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCGGGCATCCTCAAGTCCAACGACCCCGTCGGC
TTCAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGG
ATACGACCCACCCTTCTTCGGCTGATCC---------CTCCCATGTCTG-CCTGCCTGCGTGCCGACCGGACCGGCTTGC
TGTTGTAATCCGCCGTGTTTTCATTAGTTCTC---TATACGCTGATGATGTACTATCATGTTTGTAT---------GTAT
GTGAGATGGTGAAA----GAT----TAATCTGGACAAGTAGTGCAACCGCGTGTGTGTATTC---AGTGCCACATGAATG
ATTCGTGTT-----------------------------------------------------------------------
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-------------------------------------------------------------------------------T
TCATCTTCAATCATGGCAATACAACGGATATCAGAAATAATAAAAATTACATCCAGATCCGCAGACCACCTAACGACAAC
TACAAACACTGAAGCGAGCCGAAAG--CGCCATCGTCGTTGCC--CCTCCCTCGCCGGAGCTAGACAAAACTTATTATAG
TAGACAGTTGGGAAGTCATTCTGCTAAGGCTCCATAGAACAAGCGCAGTAAAACAGCAACCGCTGCCGATGAAGAGTAGC
GTGGATCGAAAGGATCCAACCTAAAAACACATGAATGTAGACGAAG---GACCAGATCCGAACAAATTCATCAAGAACGG
ATCCGCTGGAGACACACCTCCACACGCTGG-----------AGACACACCATCCGGACAATGAATCCATGCACAGTAGAG
AAGCCAATCTCAACATCTGTAGTTATACTCATACTTTTTACAGG------------GTCGCAATGGGGACACACATTTTT
TGTTCGCAAGCACCCTGATTTACCATCCATCTT--ATCATCAATATGATTACTTACCAGACGTAGACTTTAGCTGCCAAC
TGACTCAGTACTATCATCAATATGATTACTTA
>chr5A_545
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----------------------------------------------------------------CTGAACTGTTTTTCTT
TTTCAGTTGTCCTAGGATTAGCAAACGCGAAATTTAAAAA---ATCTGAACTGCGATGTTCATACGAGGCACCCGGCACA
GCCACC-TCTTCACCTACTCTTGGCC-------TGCTGGCCAGTTGGCCATCCATCCATGTAACTCTCGAGGGGCACACA
AGCGACGCGTCA------CAGTGCTGACTTGCCGTGAGAAGAGAAGTGCAGAAAAAAAAGGGTATGGCTCAGATACCTTA
TCCAGCACCCTCCAATGGCCACACGCCATGAGCACACCGCGAAATCCCGCTCCCCTCCTCCACTAACCTCGCATTCCCGC
GCCCCCACCATATCCCCCACGTCACCACCCCCCTATATACCCACAACACCAAACACCACGTAGTACGTAGCGCCTACCGA
GATCAAGAACTCGCCGCGCGTTGGTCCTTGAGCTTGAGCACCCACACAGCTCCAGCGAAGGAGGAGGACCATGGCCGCCT
CGACCGCCGCCGTGCTGTCCCCGCCCACCGTGGCCGGGCTCCGCCTGGCGCCGTCCCCGCGCGCGGCCGTCTCGTTCCGG
GGGGCCTCGTCGTCGGCGGCGAGGCGGTCCGTGGCGGCGCGGGCGGCGCTGGAGCCGTCGGTGGTGATCAGCCTCAGCAC
GGGGCTGTCGCTGGTGATGGGCCGCTTCGTCTTCTTCAACTTCCAGCGGGAGAACGTGGCGAAGCAGGTCCCCGAGCAGA
ACGGCAAGACCCACTTCGAGGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCATCCTCAAGTCCAACGACCCCGTCGGC
TTCAACCTCGTCGACGTCCTCGCCTGGGGCTCCATCGGCCACATCGTCGCCTACTACATCCTCGCCACCACCAGCAACGG
ATACGACCCACCCTTCTTCGGCTGATCCGTCCCACGTCTCCCCTGCCTG-CCCGCCTGCGTGCCGGCCGGAGCGGCTTGC
TGTTGTAATCTGCCGTGTTTTCACTAGTTCTATATTATACGCTGATGGTGTACTATCATGTTTGTAT---------GTGT
GTGAGGTGGTGAAAGATTGAT----TAATCTGGACAGGTAGTGCAACCGCGTGTGTGTACTC---AGTGCCACATGAATG
ATTTTATCTCTCTTTTCCCC---------ATAGTAGAAAAGCAATTTTAGTGTGCACGGGATATCATGTGCGTAGATCCA
CCGTCTGTGGTTGCTTTGAGATCAGTGCTACTTTTATCTTTTGACCTTTTAGAATC-TGTCTTGCTTCAAAGCGCACGGA
CAGTGAAACAAGAAAAA--AAATAGAAGAAAACATTTGAAACGAGAT------TTTTTTTTGAAAAAACTTTCGGTTAAC
TCATCTTCAATCATGGCAGTACAACGAATATCAGAAATAACAAAAATTACATCTAATTCCGCAGACCACCTAGCAACGAC
TACAAGCAAAGAAGCAAGTTGAAGG--CGCGCCGCCATCAATGCACCTCCCTCGCCGGAGCCTGACAAAATTTATTGTAG
TAGACGGTTGAAAAATCGTTTTGCTAAGTCCCTATAGAACCAGCGCATCAGACCAGCAACCGCCGCCAATGAAAAATAGT
ATAGATCAGAAGAATTCAACCTAAAAACACATGAATGTAGACGAAC---GACCAGATCCGAGCAAATTCATTAAGAACAG
ATCCGCCGAAGACACAACCCCACACGTCCACCAATGATGCTAGACACATCATCGAGACAATGAATTCATGCACGGTAGAG
AAGCCAATCTCAACATCTGTAGTTATACTCCTATTTCTTACATGCAATTGACATGCGTCGCAACGGGGACACACATTTTT
TGTTCGCAAGCACCCTGATTTACCATCCATCTTATATCATCAATATGATTACTTACAGGACGTGGACTTTAGCTGCCAAC
TGAATCAGTACTATCATCAATACGATTACTTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--
--------------S-------------------S-----SSS----------------------S--------------
---------S-S--------------SSSSSSS-------------------------S----------S-----S----
--------------------------------S---S-----------S------S-------------S------S---
--------------------------------------S-----------------------------------------
-----------------------------------------------S---------------------------S----
-------------------------------S--------------------S--------------S------------
-------------------------------S-------------------------SS--------S-----S------
--------------------------------------------S-----------------------------------
---------------------------------------------------------------------S----------
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---S--------------S------------------S----------SS--------S---------------------
---------------------------------S-----------------S----------S---SSSSSSSSSS----
-----------S-SS--SSSSSSSS------------------------------------SSSS-S----------S--
-------------S--S---SSSSSSSSS----------S---------S-S-------------S-----S--S-----
S----S-S----------S----S-------S---SSS----SSSS---SS-S-SSS-----------------------
-----------------SS----S---S-S-----------------SSSSSS------SS--S---------SS--S--
--------S-------------------S-S---------------S----------------SS-----------S---
----------S--------------SS----S-----S---SS-------S---S--S-----------S----S-----
--S-----SS----------S-----------S----S------S--S-------S------S-S--------S------
----------------------S------------S----------SSS---S--------------S--S---------
----S--S--------------S---------------S-----------------------------------------
------------------S----------------------------S----------------------------S---
---------------------------------------------S-------S--------------S-----------
---------------S----------------
>forward_710
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--------------------------------------------------GCCATCCACGTAACTCTCGT----------
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>reverse_2101
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--------------------GTGCTAAGGCCCGATAGGAC----------------------------------------
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