>input_sequence_80517
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-------------------------------------------------------------------------------A
TGCAGGGCGGGAAGAGCTCGAGCGCGGTGGGCGCGGCCAAGGAGGCGGTGGCGAACGTGGGCGCGTCGGCGTGGGCGGGC
AAGGAGAAGACCATGGCCGTGGTGCAGGAGACGGTGAACAAGGCCAAGGCGCACGACCCGGCGGCCAAGGCGGAGGCGGA
GGCCAGGAAGCAGGAGCGGATCCACGAGGCAGAGGCCGCCAAGCGGGACGCCATGCGCTACAACGCCGC-CGCCAAGGAG
CACGCCACTGCTGCGTCCTACCACCCCACCCCCGGCTCCGCCGTCGATGCCCGCGACGTGGAGGTGGAGGGCGCGGCCGC
CCCGCGCGCGGGGAGCAGCGACGACAGCTACCT---------GGGGGCGAGGCACGCGGTGGGCGAGGACGGCGGTCACC
AGCTGCCCGCGCGCGGCACGGCTGGCGGCCACTCCGCGTGA---------------------------------------
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>chr5B_1_TraesCS5B01G170200
GCTTCCCGCAGGATGTCGCTGTCGAGAACGATTTCTGGGCACAGAGGTGGGCGGAGCGAGCCGTACATCGGGCGGACAAG
CGTGCGCTGAAGGAACTGGCGGAAGCCCACATCAAGTTGGGACCTGCGTCGACCTGGGACGATGAAGATCCTCGGTGGCT
CGACGCGTTTACATCGTCGGACTACACCATCGAGGAAGAC---GAGGAGTAGTTTTATCTAGTTTTTAA--CATCATTTT
ATCTAGTTTAAGCATCATTTTATCTAGTTCTATTTGCATCGTATAAACTAGCTTGTGGTTGGGGGGTTTAAC--------
-------TATGCTATGAATTTGAAC--TGTGTTGTTTCATATTTTT-T---CGTATGTGTTGTTTCAATTTTTTTTCC-A
AGCACCGGCTAGTTGCGCGCGTTGGATGTTGTGGCGCCCGATGAAGCGCTATAGTGGCGCGCTAAATTTTGCAGCGTCTA
GTAAAGCAACCATCCTCCTGCGCGCTAAAACGCTATTTCAACGTCGCAAAAAATATTTAGTGCGCCTGTTGAAGATGCTC
TAATCAAACGCTGGTATTGTCCAGCAGTTCTTTAATGCAATTACCAAGTAAGGCTACTAGTCGATGACTGAGAAAGAAGT
TGGCCT-----AAGTTGAAGCTTCTCGTCCTCGTAACCAAAATGAGTTGCTGTGCCAACTCAATAAAAAAGCTAAAAAAT
AATCGGGTTGCAGTTA--TTGCGGAATTGATTCGAGTTCCAGAGGACACGGGTGGAGTGCCACAGGCGCCGGCAGCAGCT
TCTCCATCCGACTACACGTGCCCCTCGCCGACCTGCCGACCTGGGACACGTCCCCCCATCGGCTGTACGCACCAGCGCTT
CACATTCATCCACATATA----TACTCTACGGGGTACGTAGTTGCCAGCGTAGAACCCGCATCGAAGTGAAGACAAGAAA
CCCAAGAGATCGACCTACACCGAGGCACAGCCACAGGAGATCGTGTTGGTTTGATTCAGGGAGCCATAGAAAAGAGAT-A
TGCAGGGCGGGAAGAGCTCGAGCGCGGTGGGCGCGGCCAAGGAGGCGGTGGCGAACGTGGGCGCGTCGGCGTGGGCGGGC
AAGGAGAAGACCATGGCCGTGGTGCAGGAGACGGTGAACAAGGCCAAGGCGCACGACCCGGCGGCCAAGGCGGAGGCGGA
GGCCAGGAAGCAGGAGCGGATCCACGAGGCAGAGGCCGCCAAGCGGGACGCCATGCGCTACAACGCCGC-CGCCAAGGAG
CACGCCACTGCTGCGTCCTACCACCCCACCCCCGGCTCCGCCGTCGATGCCCGCGACGTGGAGGTGGAGGGCGCGGCCGC
CCCGCGCGCGGGGAGCAGCGACGACAGCTACCT---------GGGGGCGAGGCACGCGGTGGGCGAGGACGGCGGTCACC
AGCTGCCCGCGCGCGGCACGGCTGGCGGCCACTCCGCGTGATGACGG--------GACTCCATTCGATGTGAGTTGCGTG
TGAACTGGC----------------TGGT---GTACCTTGTGTGTTTGTTCGAGTGTGACCGCTCTTGTAGTAGTTTTGA
ACTCTGGAGAGCTGTGCTTAT----GTTGTGATTTGTGAAGTGAGTTGTTATATAATGGAGATCCCTCTGGTTCTGAATT
CGGATGGACATGTTGCAACTTGGGTACTTGGTTTACCGGAGTTTCACACGAGCTTCAAATTTGTGACAAAATCATTGAGT
CTGGTATGCATCATGCTCTTCAAATTTTTACCAAAAAAGAGTAGCAATATTGTAGAGTCAATTCGTATGTTCAATGTCTG
CGTTAAAATGCCTCAAGACATGTATACGAAGGCACGTATACATCTGTATCTAGACAAGTAACTCATGACAGTAAGTGCAT
CTCCAACAGATAGCCGCCTTGGAAAAAACGCTTTATTGCACACACGGGACCGAAAGGGTTCAGCGCCGCCGTTGGCGAAA
TTCCATCTGTTAAAATATATTTAAAATTTGTAATCTGTCTTCTACTCCCTCTCCATCCCATAATATCCCATAATATAAGA
ACGCCATAATATAGAGGAAGTACCTTATATTCAGGACATGCTTCTTGTTAAGTCTTGTACTTAATATATATTCGCCCTCG
AGACTCGATAACACATTCATTATATTTTACCAATCTCCTCTCTGTACTTTCTAACATGATATCAGTCTTACTTCAATCCT
AAATTCTAATCGCCACTGCTTCCGTCCTGTGCGTTGGCCCCGGGGCGATCAACCTCCATGACCGCCGTCAGGGGCCGCGC
CGCCTGTATCTAGGGTTCGTCCGTCGGCCGTGTTGACCGTCTGCCCTAAAAAGTCTTTTCCTGGAGCCCTTGCTTTGGGT
TTTTCTCTCTCCCGCTTGTCACCTTGATCGGCGTTCTTCTTTTTGGTTTTCGGATCTGAACTTGATCGATTTGCGTCGCC
CACCGCCGCCGTCGAACCTCATAGCGCCTCTA
>chr5B_1
GCTTCCCGCAGGATGTCACTACCGAGAACGAGTTCTGGGCGCAGAGGATGGCGGAGCGAGCCGTGCGTCGGGCAGACAAG
TGTGCACGAAAGGAACTGGCGGAAGCCCAGATCGAGCTGGGACCTGCGTCGTCCTGGGACGATGAAGATCCTCGGTGGCT
CGACGAGTTTACGTCTTCGGACTACACGACCGAGGTGGAC---GAGGAGTAGTTTTATCTAGTTTTATTTGCATCGTTTT
ATCTAGTTTAGCATGG--TTTATCTAGTTTTCTTTGCATTTG-TGAACTAGCTTGTGGTGTGGGGCTTGAAC--------
-------TATGCTATGAATTTGAACTATGTATTGTTTCATTTTTTTCT---CGTATGTGTTGTTTCAAAAAAA--TCC-A
AGCACTAGCTGGTCGCGCGCGCTGGATTTTGCAGCGCCTGCCAAAGCGCTATAGCGGCGTGCTAAATTTTGCAGCGCATG
GTAAAGCAA-----------------------------------------------------------------------
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-----------------------------------------------------------ACACCCTCCTGCGCGTGCTAA
AACGCTATTTCAATGCTGCAAAAAAAATT---------------------------------------------------
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>chr7D_1
GCTTCCCGCACGACGTTGTCACCGAGAATGAGTTCTGGGCGCACAGGAGGGCAGAGTGAGCCGCGCGTCTGGCGGACAAG
CGTGCGCGGAAGGCACTGGCGGAAGGCCAGTGCGAGCTAGGACCTGCGTCGACGCGGGACGAGGAAAATCCTTAGTGGGT
CGACGCATTTATGTTGTCCGACTACACCACCGAGGAGGAC---GAG-------TTTGTCTAGTTTTATTTTCATCGTTTT
ATCTAGTTTAAGCATCATTTTATCTAGTTCTATTTGCATTGTATGAATTAGCTTGGGGTGTGGGCCTTGAAT--------
-------TATGCTATGAACTTGAACCATGTGTTGTTTCGTATTTTT-T---CGTATGTGTTGTTTCAATTA-TTTTCC-A
AGCACCGGCTGGTCGCGCGTGCTGGATTTTGCAGCGCTAGCTGACGCAAGGC--CGGTGCACGAAAATTTGCAGCGCCTG
AAAAAGCAA-----------------------------------------------------------------------
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-----------------------------------------------------------CCACCTCTCC-CGCGCATGAA
AACACTATCTCGTCGTTGTAAAAATCTTTTAGCGCGCC------------------------------------------
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>chr6D_1
GCTTCCCGCAGGATGTCGTCGCCAAGAATGAGTTG-GGGCACAGAGGGGGGCGGAGCGAGTCGCGCGTCGGGCAGACAAG
CATGAGTGGAAGGAACTAGCGAAAGTCCACCGCGACCTGGGACCTGCGTCGACCTGGGAAGAGGAAGATCCTCGGTGGAC
CGACGCTTCTACGCCGTCGGACTACACCACCGAGGAGGATGAGGAGGAGTAGTTTTATCTAGTTTTTTT-----------
-----------GCATCATTTTATCTAGTTTTATTTGCATCGTATGAACTAGCTTGTGGTGTGGGACTTGAATTATGTGAT
GTTTTTATATGCTATGAATTTGAATTATGTGTTGTTTCATATTTTT-T---CGTATGTGTTGTTTCAATTT-TTTTCC-A
AGCACCGGCTGGTCGCACGCGCTGGATTTTGCAGCGCCTGCT--AGCGTTACATCAGCGCGCTAAAATTTGCAACGCCTG
AAAAAGCAA-----------------------------------------------------------------------
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-----------------------------------------------------------ACAACCTCCC-CGCGCGCGAG
CACGCTATTTCGGCGTTGTAAAAAAATTAGTGC-----------------------------------------------
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>chr5B_4
---TCCCGCAGGATGTCGTTGCCGAGAACAAATTCTGGGCGCAGAGGAGGGTGGAGCGAG-CGCGCGTCGGGCGGGCAAG
CGTGTGCGAAAGGAACTGGCGAAAGCCCAGTGCGAGCTGGGACCTGCGTCGACCTGAGACGAGGAAGATCCTCGGTGGGT
CGACGCGTTTACATCGTCGGACTACACCACTGAGGAGGAC---GAGGAGTAGTTTTATCTAGTTTTATTTGCATCGTTTT
ATCTAGTTTAAGCATCATTTTATCTAGTTTTATTTGCATCGTATGAACTAGCTTGTGGTGTGGGGCTTGAAC--------
-------TATGCTATGAATTTGAACTATGTGTTGTTTCATATTTTT-TTTTCGTATGTGTTATTTCAATTC-TTTTCCGA
AGCACCGGCTGGTCACGCGTGCTGGATTTTACAGCGCCTGCTGAATCACTATAGCGGCACGCTAAATTTTACAGTGCCGT
-TAAAGCAAACACCCTCTTGTGTGCTAAAATGCTATTTTGGCGTCGGAAAAAA---------------------------
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>chr5A_566
TAAGCAAATACC--------------------------------------------------------------------
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----------------------------------------------AGTAAGGTTACTAATCGATGACTGAGAAAGAAGT
TGGCCTAGCCGAAGTTGAAGCTTCTCTTCCTCGTAACCAAAACGAGTTGCTGTGCCAACTCAAAAACAAAACG-TAAAAT
AATGGAGTTGCTGTTACTTTGAGGAATTGATTCGAGTTCCAGATGACACGCGTGGAGTGCCACAGGCGCCGGCAGCAGCT
TCTCCATCCGACTACACGTGCCCCTCGCCGACCTGCCGACCTGGGACACGTCTTCCCCTCGGCTGTAGGCCCCAGCGCTT
CACATTCATCGACATATATAG---------------------TACCAGCGC--AA-CTGCGTCGAAGC-AAGACAATAAA
CACAAGAGATCGACCGACACCGAGAC-----------AGATCGTGTTGGTTTCATTTTGCGAGGTAGATAGAGAAAGGGA
TGCAGGGCGGGAAGAGCTCGAGCGCGGTGGGCGCGGCCAAGGAGGCGGTGGCGAACGTGGGCACGTCGGCGTGGGCGAGC
AAGGAGAAGACCATGGCCGTGGTGCAGGAGACGGTGAACAAGGCCAAGGCGCACGACCCGGCGGCCAAGGCCGAGGCGGA
GGCCAGGAAGCAGGAGCGGATCCACGAGGCGGAGGCCGCCAAGCGGGACGCCATGCGCCACAACGCCGC-CGCCAAGGAG
CACGCCACCGCCGCGTCCTACCACCCCACCACCGGCGCCGGAGTGGACGCCCGCGACGTCGAGGTGGAGGGCGCGGCCGC
CCCGCGCGCGGGGAGCAGCGACGACGGCTACCTGCCGGTGTCGGGGGCGGGGCACTGGGTCGGCGAGGGCGGCGGTCACC
AGCTGCCCGCGCGCGGCACGCCCGGCGGCCACTCTGCGTGATGACGAATTGACGAGACTCCATCCGATGTGATTTGCGTG
TGAACTGGCTGGTTTGGCAAATAGCTGGT---ATACCTTGTGTGCTTGTTCGAGTGTGACCCCTCCT---GTAGTTTTGA
GCTCTCAAGAGCTGTGCTTATTTACGTTGTGATCTGTGAAATGAGTT-TTATATAATGGAGAT-----------------
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>chr5D_618
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----CT-----AAGTTGAAGCTTCTCGTCCTCCTAACCAAAACGAGCCAACTC----------AAAGAAAACG-AAAAAT
AATCGAGTTGCTGTTACTTTGAGGAATTGATTCGGGTTCTAGAGGACACGCGTGGAGTGCCACAGGCGCCGGCAGCAGCT
TCTCCGTCCGAGTACACGTGCCCCTCGCCGACCTGCCGACCTGGGACACGTCCCCCCGTCGGCGGTACGCATCAGCGCTT
CACATTCATCCACATATATATATACTCTACGGAGTACGTAGTTACCAGCGTAGAA-CCGCATCGAAGTGAAGACAAGAAA
CACAAGAGATCGACCGACACCGAG------CCACAGGAGACCGTGTAGGTTTGATTTTAGCGAGCCAGAGGG---AGGGA
TGCAGGGCGGGAAGAGCTCGAGCGCGGTGGGCGCGGCCAAAGAGGCGGTGGCGAACGTGGGCGCGTCGGCGTGGGCGGGC
AAGGAGAAGACCAAGGCCGTGGTGCAGGAGACGGTGAACAAGGCCAAGGCGCACGACCCGGCGGCCAAGGCGGAGGCGGA
GGCCAGGAAGCAGGAGCGGATCCACGAGGTGGAGGCCGCCAAGCGGGACGCCATGCGCCACAACGCCGC-CGCCAAGGAG
CACGCCACCGCCGCGTCCTACCACCCCACCCCCGGCTCCGCCGTCGATGCCCGCGACGTGGAGGTGGAGGGCGCGGCCGC
CCCGCGCGCGGGGAGCAGCGACGACGGCTACCTGCCGGTGTCGGGGGCGGGGCACGCGGTGGGCGAGGGCGGCGGTCACC
AGCTGCCCGTGCGTGGCACGGCCGGCGGCCACTCCGCGTGATGACGG--------GACTCCATCCGATGTGTTTTGCATG
TGA-----CTGGCTTGGCAAATAGCTAGTGTAGTACCTTGTGTGTTTGTT--------ACCGCTCTTATATT--TTTTTA
GCTCTGAAGAGCTGTGCTTATTAT-GTTGTGATTCGTGAAATGAGTT---------------------------------
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>SNPs
---------------------S---------S---------------S----------------S-S-------------
-------S-------------------------S--S-------------------------------------------
-----------------------------S------S------------------------------SS------S----
--------------------------------------------S--------------SS----S--S-----------
-----------------------------------------------------------------------S--------
----------S--S-------S-----S---SS-----S-S-------------S---------------------S--S
---------S--S----S--S-S-------S-------SSS-----S------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----S--------------------
------------------------------------------S--------------------S--S---S-SS------
-----S-----S---------S----------------------------S-----------------------------
---------------------------------------------------------S----------------------
--------------------------------S----------S-----------S------------------------
-S-------------S--------S-SSSS--------------------------SS-----S--S-S-S-SS-SSS--
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------------------------------S---------------------------S---------------------
-----------S--------------------------------------------------------------------
-------------------------S-----------------------S------------------S-----------
----------------------S----------------------------------------S--------S-------
-------------------------------------------------------------------S------------
S-----S---------------------------------S------S---------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_455
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-----------------------------------GCCCGATGAAGCGCTATAGT-------------------------
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>reverse_1504
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---------------------------------------------------------------TCGATGTGAGTTGCGTG
TGA-----------------------------------------------------------------------------
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