>input_sequence_80513
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--------------------------------------------------------------------ATGGCGGCGCTG
GAGATCGCCTTCGCCGCCATCAGCGTCGCGGCCATCATCGCCATTGCCTACTTCCTCCACACGTGCTCGCGGGAGGCCAC
GCCCGTGCCGATGCCGATGCCGCCCGGCGCGGAGGAGACGGCGGCCGCCGCCGGCGACGTCGAGCTGCAGCAGGCGGGGA
TGGACGAGGCCGCGATCAGCGCGCTGCCCAAGGTGGTGGTGCACGCGAGCGGCGGGGAA------GCGTCCTCGTCGTCC
ACGAGCTGTGCGGTGTGCCTGGGCGAGTACGACCGGGGGGACGTGCTGCGGGTGCTGCCGGACTGCGCGCACTCGTTCCA
CCGGCCGTGCGTCGACCAGTGGCTGCGCCTTCGCCCCAGCTGCCCCGTCTGCCGCACGC---------------CGCCGT
CCACGCCGGCGCCGGCAGCCGCCTCGCCGAGCCAAACGTGA---------------------------------------
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>chr5A_1_TraesCS5A01G027500
GCGTTGCGGGCTAGCGATTAGCGAGCGGACGACGGCTGGCATTGGCGAATCGGGCACTGCAGCGGGCATTGGCAGGCCCG
GCTGTAGCTGATTGGGCACTGCAGCGGGAGGAGCACGCGCGGGGCTGGCAGGGAGAGGCTAGCAACGGGCGTTGGTGCGC
GCGGTTGCAGCGGATCGGGCAGCGCGGCAGATGGATGGGCACGCACGGGGCTGGCGGGGAGGCGGCGACGCGAAGGAGGC
GCGCGGCGGCGACGGCTGCAGCGAAAGACTAGGGGTAAAACCTAAAAACTGATACCATGTATGATTGCACGATGTGTTGC
TCTTCATGCATGGACACACACATATATATATAATATACAAAGGTAGGTCACGGACCTTAACTATACAAAAAATTAGAAGA
CAAGCCCAATGCACATAATACATATACTCAACACTATCAACAGCGCATGCTTTCAAAACATTATCTTGGATGAGCTTATT
TTTCTTTGTTTTCGCTAGAGGATAGACACATAGTTGCTAGTTTATTTTAAGGTGGTAAAACATTGCTGGTTTCCTCAGCA
TCTCATCCACGTCGCCACTCTGTTTTCGCGCACCCTGCTCAACACGTCTGAACTCGATCGATCAGCAGGCCGGAGTTGAC
CCGCCGGCGGCGTGCCCCG-CGCGACCGCGGCCCCTCGGGCGGCCGCGAGCCGTTCCCATTCCTGAATAAAGAAAGAGGA
GGAAGA---GAAGCCGAGTTCCTCGAATGGTAAGCAGGCGTTGACCAGAGCAGAGTGGATCACATCGCCACCGCCACCAC
CACCGCCTGATGATTGCTCGAAAGATAAACACATCCCATCCGATCAGATAGCTTATAATCTTCCATACT-----------
-GATGCGGAGACTGATTAGCGGCCGTTGACTTTGCTTGGCGCGCGCGCGGCGGGCCTCGGGCTCGGCTCAGCTCATCTCG
CTCGCCGGAGTCTGGG------------CGAGGACGGACGCCGGGGCCGGGGGGCGGGGGCATGTGAAATGGCGGCGCTG
GAGATCGCCTTCGCCGCCATCAGCGTCGCGGCCATCATCGCCATTGCCTACTTCCTCCACACGTGCTCGCGGGAGGCCAC
GCCCGTGCCGATGCCGATGCCGCCCGGCGCGGAGGAGACGGCGGCCGCCGCCGGCGACGTCGAGCTGCAGCAGGCGGGGA
TGGACGAGGCCGCGATCAGCGCGCTGCCCAAGGTGGTGGTGCACGCGAGCGGCGGGGAA------GCGTCCTCGTCGTCC
ACGAGCTGTGCGGTGTGCCTGGGCGAGTACGACCGGGGGGACGTGCTGCGGGTGCTGCCGGACTGCGCGCACTCGTTCCA
CCGGCCGTGCGTCGACCAGTGGCTGCGCCTTCGCCCCAGCTGCCCCGTCTGCCGCACGC---------------CGCCGT
CCACGCCGGCGCCGGCAGCCGCCTCGCCGAGCCAAACGTGATCTCTTC-------TTTATTCTGAAACTCTCGAGATGTA
AAGCAAAGTGCATGTATAGTTCTGTATACTTCACTCAAATACTT-TTCGTGGGTATCCAGAAAATCGGTCGCATTCTAAA
TCACC-ATGTTTTGGTGATGAGGGCGAGCCAGCCGGAGAGAGAGAGTCAAAAAACTACATGCACCATCAAATCGGCACAT
CTCCAAACCATGTACTCC--------------------------------------------------------------
------------------------TACTTAACTACATACACACCTTATACAGTCAAAAAAAAA-TACATACACCATCAAA
TATTGGCAGCTTGAAAGAATTCAATTCAGACTGCCTGATGAACGAACTGTTCCATGGAGGATACACAGAAACCCTCATCA
TTATTCATTGGAGATAAACAGCAAACATACAGAGGGTATTTCAGGTCTAACAA-CACAATACAACACGGGTACATGATAA
ACA--GACACGGACAAACAGACAACGGTATATATGTCCCTAACATTAACAAGTTAGACAAACAGACGATATGGTGGGG--
---TGGGGTGGGGTACATGTATGTCGCGCCGGGCACGGTGACGAACGCCGGCGATACAAAATGTAACTAAATGCAGAGCC
TACTTTACCGGTTCTCATCATCCAGTACCGTCAGACTGGCTAAATTAACATGCTTACCAGAGGCTGATTGATTACAATGC
GAATGTTGAATGATCCTAGGAGACGGCGGCGCGGAGGAGGGGG-CAGCTGCTTCAGGTGCACTTCACCGTCGAGGCGCCA
GGCGACAGCTGCCCATTGTTGACGGCGGACGGCGACTCATTGGTGGCCGCACCAGGTTGGCTGTCTACTGCGGCAGCATC
TGATTTGGTTTCGGATACTGCAGCAGGAGCAGGAGCAATAGCTGGCTCGCTGGGAGCAACAACTGAGTTCTCAGTTGGCT
TGCTCGCTGGAGGGGCTACTTCCTCTGTCTTCGCCCCCTCCGAACTCACCAGAGGAGCTTCCTCTATCTTCACCTCCTCC
GAACTCACCGGAGGAGGGGCATCAGC
>chr5B_536
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-------------------------------------------------------TAAAATATCGCTGGTTTTCTCAGCA
TCTCATCCACGTCGTCGCTCTGTTTTAGCACACCCTGCTCAACACGTCTGAGCTCGATCGGTCAGCAGGCCGGAGTTGA-
CCGCCGGCGGCGTGCCCCCACGCGACCGCGGCCCCTGAGGCGACCGCGAGCCGTTTCCATTCCAGAATAAAGAAAGAGGA
GGAAGAAGAGAAGCCGAGTTCCTCGAATGGTAAGCAGGCGTTGACCAGAACAGATTGGATCACATCGCCACCACCACCAC
CACC---TGATGATTCCACGAAAGATAAACACATCCCATCCGATCAGATAGCTTATCATCCTCCATACTTTTTAGTTGAT
TGATGCGGAGATAGGTAGGCGGGCGTTGACTTTGCCTGGCGCGCGCGCGGCGGGCCA------CGGCTCAGCTCACCTCC
CTCGCCGTC------GCCGGAGCCCGGACGAGGACGGACGCCGGGGCCTGGGGGCGGGGGCATGTGAAATGGCGGCGCTG
GAGATCGCCTTCGCCGCCATCAGCGTCGCGGTCATCGTCGCCATTGCCTACTTCCTCCACACGTGCTCGCGGGAGGCCAC
GCCCGTGCCGATGCCGCCGCCCCCCGGCGCGGAGGAGGCCGCCGCCGCAGCCGGCGACGTCGAGATGCAGGCC---GGGA
TGGACGAGGCCGCGATCAGCGCGCTGCCCAAGGTGGTGGTGCGCGGCGGGGCCGGGGAGGCGTCGTCGTCCTCGTCGTCC
ACGAGCTGCGCGGTGTGCCTGGGGGAGTACGACCGGGGAGACGTGCTGCGGGTGCTGCCGGACTGCGCGCACTCGTTCCA
CCGGCCGTGCGTCGACCAGTGGCTGCGCCTCCGCCCCAGCTGCCCCGTCTGCCGCACGC---------------CGCCG-
--------------GCAGCCCCCTCGCCCAGCCAAACGTGATTTTTTTTTCTTCTTTTGTTCCGAAACTCTCGAGATGTA
AAGCAAAGTGTATGTATAGTTGTTTATACTTCACTGCAAATATTATTCGTGGGTATCCAGAAAATCGGTCGCATTCTAAA
TCACTAATGTTTTGGTGATGAGGGCGAGCCAGCCGGAGAGAAGCAGTCAAAAAACTACATGCACCATCAAATTGGCACAT
CACCAAACCATCTACTTA--------------------------------------------------------------
-----------------------------AACTACATACACACCTTATACAGTCTAAAAAAAACTACATACACCATAAAA
AACTGGCAGCTTGAGAGAATTCAATTCAGAATGCCTGATGAATGAACTGTTCCAGGGAGGATAAACAGAAACCCTCATCA
TTATTCATTGGGGATAAACAGC-AACATACAGAGGGTATTTCAGGTCTAACAA-CACAATACACCACGGGTACATGATAA
ACACAGACACAGACAAACAGACAACGGTATATATGTCCCTAACATTAACAAGTTAGACAAACAGACGATATGGTGGGGTC
GGGTGGGGTGGGGTACATGTATGTCGCGCCGGGCACGGTGACGAACGCCGGCCATACAAAATGTAACTAAATGCAGAGCC
TACTTTACCGGTTCTCATCATCCGGTACCGTCAGACTGGCTAAATTAACATGCTTACCAGAGGCTGATTGATTACAATGC
GAATGTTGAATGATCCTAGGAGACGGCGGCGCGGAGGAGGGGGGCAGCTGCTTCAGGTGCACTTCACCGTCGAGGCGCCA
GGCGACAGCTGCCCATTGTTGACGGCGGACGGCGACTCATTGGTGGCCGCGCCAGGTTGGCTGTCTACGGCGGCGGCATC
TGATTTGGTTTCAGATACTGCAGCAGGAGCAGGAGCAATAGCAGGCTCGCTGGGAGCAGCAACTGAGTTCTCAGTTGGCT
TGCTCGCTGGAGGGTCTACTTCCTCTGTCTTCGCCCCCTCCAAACTCACCGGAGGAGCTTCCTCTGTCTTCACCTCCTCC
GAACTCACCAGAGGAGCGGCATCAGC
>chr5D_560
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-------------------------------------------------------------------------------A
TCTCATCCACGTCGCCTCTCTGTTTTCGCGCACCCTGCTCAACACGTCGGAGCTCGATCGATCAGCAGGCCGGAGTTGA-
CCGCCGGCGGCGTGCCCCG-TGCGACCGCGGCCCCTCGGGCCACCGCGAGCCATTCCCATTCCTGAATAAAGAAAGAGGA
G---GAAGAGAAGCCGAGTTCCTCGAATGGTAAGCAGGCGTTGACCAGAACAGAGTGGATCACATCGCC---GCCACCAC
CACC---TGATGATTCCACGAAAGATATACACGTCCCATCCGATCAGATAGCTTATCATCTTCCATACTTTTAGTTG--T
TGATGCGGAGATAGATAAGCGGCCGTTGACTTTACCTGGCGCGCGCGCGGCGGGCCT------CGGTTCAGCTCATCTCG
CTCGCGGTCGCCGGAGCCGGAGCCCGGACGAGGACGGACGCCGGGGCCGGGGGGCGGGGGCATGTGAAATGGCGGCGCTG
GAGATCGCCTTCGCCGCCATCAGCGTCGCGGTCATCATCGCCATTGCCTACTTCCTCCACACGTGCTCGCGGGAGGCCAC
GCCTGTGCCGATGCCGCCGCCCCCCGGCGCGGAGGAGGCCGCCGCCGCCGCCGGCGACGTCGAGATGCAGGCC---GGGA
TGGACGAGGCCGCGATCAGCGCGCTGCCCAAGGTGGTGGTGCGCGGCGGGGCCGGGGAGGCGTCGGCGTCCTCGTCGTCC
ACGAGCTGCGCGGTGTGCCTGGGGGAGTACGACCGGGGAGACGTGCTGCGGGTGCTGCCGGACTGCGCGCACTCGTTCCA
CCGGCCGTGCGTCGACCAGTGGCTGCGCCTCCGCCCCAGCTGCCCCGTCTGCCGCACGCCGCCGTCTACGCCGGCGCCG-
--------------GCAGCCCCCTCGCCCAGCCAAACGTGATTTTTTTT----------TTCTGAAACTCTCAAGATGTA
AAGCAAAGTGTATGTACATTTCTGTATACTTCACTGCAAATATTTGGATGGTCGTAGGAGCATCGCCA------------
--------------------------------------------------------------------------GCACAT
CTCCAAACCATCTACTCCCTCCGTCCCAAAATTCTTGTCTTAGATTTGTCTAGATACGGATGTATCTAGACAAATCTAAG
ACAAGAATTTTGGGACGGAGGGAGTACTTAACTACACACACACCTTATACAGTCAAAAAG--ACTACATACCATC----A
AATTGGCAGCTTGAAAGAATTCAATTCAGGATGCCTGATGAATGAACTGTTCCATGGAGGATACACAGAAACCCTCATCA
TTATTCATTG-AGATAAACAGC-AACATACAGAGGGTATTTCAGGTCTAACAAACACAATACAACACGGGTACATGATAA
--ACAGACACAGACAAACAGACAACGGTATATATGTCCCTAACATTAACAAGTTAGACAAACAGACGATATGGTGGGGTG
----GGGGTGGGGTACAGGTATGTCGCGCCGGGCACGGTGACGAACGCCGGCCATACAAAATGTAACTAAATGCAGAGCC
TACTTTACCGGTTCTCATCACCCAGTACCGTCAGACTGGCTAAATTAACATGCTTACCAGAGGCTGATTGATTACAATGC
GAATGTTGAATGATCCTAGGAGACGGCGGCACGGAGGA-GGGGGCAGCTGCTTCAGGTGCACTTCACCGTCGAGGCGCCA
GGCGACAGCTGCCCATTGTTGACGGCGGACGGCGACTCATTGGTGGCCGCGCCAGGTTGGCTGTCTACTGCGGCGGCATC
TGATTTGGTTTCAGATACTGCAGCAGGTGCAGGAGCAATAGCAGGCTCGCTGGGAGCAGCAACTGAGTTCTCAGTTGGCT
TGCTCGCTGGAGGGGCTACTTCCTCTGTCTTCGCCCCCTCCGAACTCACCGGAGGAGCTTCCTCTGTCTTCACCTCCTCC
GAACTCACCGGAGGAG----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--S--------S-------
----------------S----------------------------------S---------------------------S
------------------------------------------S-------------------------------------
-------------------------------------------------S------------------------------
----SSS--------S-S--------------------------------------S-----------------------
-----------SS---S------------------S---------------------SSSSSS-----------------
-------SS-S-S-S-----------------------------------------------------------------
-------------------------------S------------------------------------------------
----------------SS---S---------------S-S--S---------------------S-----SSSSSS----
------------------------------------------S--SSS-S-S------S---------------------
--------S--------------S--------------S-----------------------------------------
------------------------------S------------------------------------------------S
SSSSSSSSSSSSSS------S-------S-------------S-S--S----------S---------------------
----------S------------------------SS--SSS--------------------------------------
----S------------------------------------SSS----------------------------S-------
-----------S--------------------------------------------------------------------
----------------------------------------------------------------------------S---
S-----------------------------S-----------S-------------------------------------
----------------------S---------------------------------------------------------
----------S---------------------------------------------------------------------
----------------------------------------------------S---------------------------
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--------------------------------------------------S-----------------------S-----
------------S-----------------------------S---------------S---------------------
--------------------------------------------------S--------------S--------------
----------------S---------
>forward_770
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------------------------------TAAGCAGGCGTTGACCAGAG------------------------------
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>reverse_1673
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------------------------------------------------------------------------CGGCACAT
CTCCAAACCATG--------------------------------------------------------------------
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