>input_sequence_80502
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-------------------------------------------------------------------ATGAGGACACAAG
CTGTCGTGCTCGCCTACTCGCTGTTGGCATCCGCGCTGCTGTGCAGGTGCGCCGCGGCCTCGCCGGCGTTCATCGTCGGG
AAGCTCGTCATGGGCGGTGAGTATTCAGTC--------------------------------------------------
-------------------------------------------------------------------------------G
TACACTGAGAACTGACCAATCAGTTTGGGTACGATCGACTAGCGTACTTACACATGTGTTTGTGTTTTGCAGGGGTGGAG
TTACGCCGTCCCATGATCGACACCATGACGGCGAATCAGTCTGCACCACTGCAACTTTCGATGGCGGCGAGCGATGGGCA
TGTGAATGGACTCCAGCTGAACTGGTTCTCCTTGCTCCCGGAAATAACCTCACAGCTGGGCCGGAGCCATCCTCTTGCGG
AACAAGGGATAGTGCTCGATCACCTGCTCGTGTTTTTGGTGCTCTTCGTTGTGTACATTTTCCGCTGA------------
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>chr3B_1_TraesCS3B01G274900
TGTCATGTAGGACACATGATCCGACCAAACATTACAGGCAGGCCTACTTTGTTGAAAAAAGACAGGGCAATTTATTATAA
CAATAA----------TATCTTATTTTTATT---TAATATAGATTAGTCTTAGGTCTTGTT-TGACCTGTGAATGACTCC
CTTTGTTGAAACTTCTGTTCCC-AAATTCATAAAATAAAAGGGAAAATATTTTCACTTTCCTAAACTAAGGACGGGAAAT
AAGAAGGCGAGCATATCTTCTAAATTAGTCATACTCAACTCGGGAAAAAAATTATATGAGACCAGGTCTCATATAAAGCA
GGTGAGACCCGCCCTGATGGATGACACGTGGCATTCACAAATCACAAAGCATCTAATCTCTCCCCCCCTGATTTCAGGTG
GGGGGTGGGGTGGATGCTTTGTGATTTGTGGATGCCACGTGTCATCCATCAGGGCGGGTCTCACCTGTTAACCCGTGAGA
CCTGGTCTCATAGAATTCTGCGGATAAATAATTTCAGGAGTATTTA-----------TTTTGCGGGAGCTGACCACAAAT
ACATCAGGCCATCATTTTTGACAAAGCTGACGACAAATACATCACACATTAGTTGTGGCGTGCGCTAGTAGCTGGCCTGC
TTCCCTGCCTGCCGGGCAGCGTGCATCCTTTGACAAAA-TCATTCCGCCGGATAAATCCGGATGGTGGCCAACCGTGACA
GACTTCCTCAACAGCCGCCCTTCCCGCCGCTCATCTGCCCTGCCGCCGCAAATCCAACGGCCCATACCTGCACACGTCAT
AGCACGAGTAAGAAAATACAGCGAACCCAGGAACCGCACGGCACTCGGTCAGAAGCGGCTTGCTGATGAATCAAGTCCGG
TCAGCGGGGCAGACTCCGGACACGAAAACAAAGCAGCACCAATTCCCGCCTCTTTATAAACCCGACGCGAGTGAGCCACC
AAATCACACAGTTCTGTCGTCGCGGCCTACAACCGGGGAAAGCACAAACAAGCCGAGCGCCAACACCATGAGGACACAAG
CTGTCGTGCTCGCCTACTCGCTGTTGGCATCCGCGCTGCTGTGCAGGTGCGCCGCGGCCTCGCCGGCGTTCATCGTCGGG
AAGCTCGTCATGGGCGGTGAGTATTCAGTC--------------------------------------------------
-------------------------------------------------------------------------------G
TACACTGAGAACTGACCAATCAGTTTGGGTACGATCGACTAGCGTACTTACACATGTGTTTGTGTTTTGCAGGGGTGGAG
TTACGCCGTCCCATGATCGACACCATGACGGCGAATCAGTCTGCACCACTGCAACTTTCGATGGCGGCGAGCGATGGGCA
TGTGAATGGACTCCAGCTGAACTGGTTCTCCTTGCTCCCGGAAATAACCTCACAGCTGGGCCGGAGCCATCCTCTTGCGG
AACAAGGGATAGTGCTCGATCACCTGCTCGTGTTTTTGGTGCTCTTCGTTGTGTACATTTTCCGCTGATTTCGAGGCAGT
TCCAAATCTTCTCCGGTTTATACTCAGAT-----GTATTATATGTGCTGTGTACTATATTTAATGTCCTGCGCAAGCAGT
AGAACTAATAATAATCTGATACTCCCG----TTTTTTATATAAAGCGTATTTATTTTTTAATAAAATTTCACAATGTAAG
ATGCATTTCTTCTAACTCCTCAACATTTTATTTCTAGCGCTCTAGAGAAAAGGAAAAATATCTTTCCCCTGATTGCATGT
ATTTCTCTTTTTAAAGAAAAAAAGGAAAATGTCTCGGTTTTGATTGCGTGTATCTCTTACTACTTTCCAAGCATAAATGA
TTAATTGCTACTAATCAATGATTTAGCCAAGGTTATTTTTGTCCTAACTTGTGTATAATTACGTGTCTTGGTCACCGTGC
CAAAATTATACATCTTAAATAAAGGAATGGACGGAGTATGTTAAGAGCAACTCCAGCACATGTATCCATTTCGTTCGCCG
CCGTCCGTTTGGATCGCCGCGGACAAAAGTGCTGACCCCACGCGCTGACCCATTCCCAAAATGTCTTCACTTCACGTCA-
----------GCGCGAACCCATTTTCGGCCCAAATTTGCGGCTGAAATGCATCGGCGCGGATGCGAAGCGGATGCGCCGC
GCA--CTCTCGGTCTCCGTCGCGTCCCCACCTGGCAGTCGCCCAACTATCGAGGTCGTCTTTATTAATGACGACCGCCGA
CCACGGGC-CCACGCATCAGCGACGGCGGTCGACCTTTTTT-AATCCGAGCGTGC-AGTGGGGCGGCGTCCTCATCCGCT
TCCAGACGCCCTTGTCCTCATCTCGCCA-CTCACTGTGCTCCCCCGTCGGCGA-----------TAAAACCTAGCCATCG
CCATGGGCTTCTTATCCGACAAGGGCAAGGGCAAGGCCTCCATCGCCCCT----------TCCCCCCACCTCTGTCGGCA
TCTTCCCGCCGGCCTCAGTTGCGCATCAACGTCCCAGTGCACCAGGCAAAGTGGCACTGAGAGCACCGCGTCCCC-
>chr3D_1
TGTCATGCAGGACACATGATCCGACCAAACATTACAGGCAGGCCTACTTTGTTGAAAAAAGACAGGGCAATTTATTACAG
CAATACTATCTTATATTATCTTATTTTTATT---TAATATAGATTAGTCTTAGGTCTTGTA-TGACCCGTGAAAGACTCT
CTTTGTTGAAAATTCTGTTCCCAAAATTCATAAAATAAAAGGAAAAATATTTTCACTTTCCTAAACTAAGGACGGGAAAT
AAAAAGGCGAGCATATCTTCTAAATTAATCATACTCAACTCGGCCCTTCCTAGAATGGGGCATTATCTGTCCC-------
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----------------------GATAAATAATTTCAGGAGTAATAAATAGGACTATTTTTTGTGGGAGCTGACCACAAAT
ACATCAGGCCATCATTTTTGACAAAGCTGACGACAAATACATCACACATTAGTTGTGGCGTGCGCTAGTAGCTGGCCTGC
TCCCCTGCCTGCCGGGCAGCGTGCATCCTTTGACAAAA-TCATTCCGCCGGATAAATCCGGATGGTGGCCAACCGGGACA
GACTTCCTCAACAGCC---CTTCCCGCCGCTCATCTGCCCTGCCGCGGCAAATCCAACGGCCCATACCTGCACACGTCAT
AGCACGAGTAAGAAAATACAGCAGACCCAGGAACCGCACGGCACTCGGTCAGAAGCGGCTTGCTGATGAATCAAGTCCGG
TCAGCGGGATAGACTTCAGACACAAAAACAAAGCCGCACCAATTCCCGCCTCTTTATAAACCCGACGCGAGTGAGCCACC
AAATCACGCAGTTCTGTCATCGCGGCCTACAACCGGGGAAAGCACAAACAAGCCGAGCGCCAACACCATGAGGACACAAG
CTGTCGTGCTCGCCTACTCGCTGTTGGCATCCGCGCTGCTGTGCAGGTGCGCCGCGGCCTCGCCGGCGTTCATCGTCGGG
AAGCTCGTCATGGGCGGTGAGTATTCAGTGCCTGTTCGGTACTTCTCCCATTTCAAAACTCCACTCCGTGCGAGGAGCTG
GGTCTGTGCGATTGCGCTATCGCTCCCTCCGCTCCGAGAGTTGCAGCTGTGGAGCGGAGTGGATCCGAGCAGGGCTTCAG
TACGCCAACAGCTGGCCAATTGGTTTGAGTACGATCGACTAGCGTACTTACACATGTGTTTGTGTATTGCAGGGGCGGAG
TTACGCCGTCCCATGATCGACACCATGACGGCGAATCAATCAGCACCACTGCAACTTTCGACGGCGGCGAGCGATGGAAA
TGTAGACGGACTCCATCCGAACAGGTTCTCCTTGCTCCCGGAAATAACCTCACCGCTGGACCGGAACCATCCCTTTGGCG
AACAAGGGATAGTGCTCGATCACTTGCTCGTGTTTTTGGTGCTCTTTGTTGTGTACATCTTCCGCTGATTTCGAGGCAGT
TCCAAATCTTCTCCGGATTACACTCAGAT-----GTATTATATATGCTGTGTACTATATTTAATGTCCTGCGCAAGCAGT
AGAACTAATAAT---CTGATACTTCCTACGTTTCTTTATATAAGGTATATTTGTTTTTTAATAAAATTTCACAATATAAG
GTGCATTTCTTGTAACTCCTCAACATTTCGTTTTTAGCGCTCTTGAAAAAAAGAAAAATATCTCTTCCC-GATTGCATGT
ATTTCTCTTTTTAAAGAAAAAAAGGAAAGTGTCTCGGTTCTGATTGCATGTATCTCTTACTACTTTTCAAGCATAAATGA
TTAATTGCTACTAATCAATGATTTAGCCAAGGTTATTTTTGTCCTAACTTGTGTATAATTACGTGTCTTGGTCACCGTGC
CAAAATTATACACATTAAATAAAGGAATGGAGGGAGTATGTTAAGAGCAACTCCAGCACATGTATCCATTTCGTCCGCCG
CCGTCCGTTTGGGTCGCCGCGGACAAAAGTGCTGACCCAACGCGCCGACCCATTCCCAAAATGTCTTCGCTTCGCGTCC-
----------GCGCGGACCCATTTCTGGCCCAAATTTGCAGCTGAAATGCGTCGGCGCGGATGCG-----------CCGC
GCG--TCCTCGGTCTCCGCCGCGTCCCCACCTAGCAGCCGCCCAACTACCGAGGTCGTCTTTATTAATGACGACCGCCAA
TCGC-GGC-CCACGCATCAGCGACGGCGGTCGACCTTTTTT-AATCTGAGCGTGC-AGTGGGGCGGCGTCCTCATCCACT
TCCAGACGCCCTCGTCCTCATCTCGCCA-CTCACTGTGCTCCCCCGTCGGCGC-----------TAAAACCTAGCCATCG
CCATGGGCTTCTTCTCCGGC------AAGGGCAAGGCCCCCGCCGCCCCTCCT-----------CCCGCCTTCGCCGGCG
TCTTCTCGCCGGCCTCAGCTGCGCATCAAC----------------------------------------------
>chr3A_1
TGTCATGCGGGACACATGATCCGAC-AAACATTACCGGCGGGCCTACTTTGTTGAAAAAAGACAGGGCGATTTATTACAG
CAATAATGTCTTATATTATCTTATTTTTATTTAATACTATAGATTAGTCTCAGGTCTTGTTTTGACTGGTGATAGACTCC
CTTTGTTGAAAATTTTGTTCCTAAAATTCATAAAATAAAAGGAAAAATATTTTCACTT----AAACTAAGGATGGGAAAT
AAAAAGGCGCGAATATCTTCTAAATT-ATCATACTCAACTCGGCCCTTCCTAGAATGGGGTATTATCTGTCCC-------
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----------------------GATAAATAATTCCAGGAGTAATAAATAGGTCC-TTTTTTGCGGGAGCTGACCACGAAC
ATATCAGGCCATCATTTTTGACAAAGCTGACGACAAATACATCACACATTAGTTGTGGCGTGCGCTAGTAGCTGGCCTGC
TTCCCAGCCTGCCGGGCAGCGTGCATCCTTTGACAAAAATCATTCCGCCGGATAAATCCGGATGGTGGCCAACCGTGACA
GACTTCCTCAACGGCC---CTTCCCGCCGCTCATCTGCCCTGCTGCGGCAAATCCAACGGCCCATACCTGCACACGTCAT
AGCACGAGTAGGAAAATACAGCAGACCCAGGAACCGCATGGCACTTGGTCAGAAGCGGCTTGCTGGTGAATCAAGTCCGG
TCAGCGGGACAGACTTCTGACACGAAAACAAAGCAGCACCAATTCCCGCCTCTTTATAAACCCGACGCGAGTGAGCCACC
AAATCAT--------------GCAGCCTACAACCTGGGAAAGCACAAGCAAGCCAAGCGACAACACCATGAGGGCACAAG
CTGTCGTGCTCGCCTACTCGCTGTTGGCGTCCGCGCTGCTGTGCCGGAGAGCCGCGGCCTCGCCGGCGTTCATCGTCGGG
AAGCTCGTCATGGGCGGTGAGTATTCAATC--------------------------------------------------
-------------------------------------------------------------------------------G
TACACCAAGAGCTGGCCAATCGGTTTGAGTACGATCGACTAGCGTACTTACACATGTGTTTGTGTTTTGCAGGGCTGGAG
TTACGCCGTCCCGTGATGGACACCATGACGGCGAATCAGTCAACACCACTGCAACTTTCGACGGCGGCGAGCGATGGAAA
TGTGGACGGACTCCATCCGAACTGGTTGTCTTTGCTCCCGGAAATAACCTCACCGCTGGACCGGAACCATCCCTTTGGCG
AACAAGGGATCGTGCTCGATCACTTGCTCGTGTTTTTGGTGCTCTTTGTTGTGTACATCTTCCGCTGATTTCGAGGCAGT
TCCAAATCTTCTCCGGATTACACTCAGATCAGACGTATTATATGTACTGTGTACTATAGTTAATGTCCTGCGCAAGCAGT
AGAAATAATAAT---CTGATA-----------------------------------------------------------
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>chr5B_1868
GGCGTAG-------------------------------------------------------------------------
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--------------------------------------TGGTAAGAGCAACTCCAACACAGGTACCCATTTCGTCCACCG
CCGTTCGTTTGGGTCGCCGCGGACAAAAGAAGT-GTCCAACGCACTGACTCATTTTCAAAACGCATCCGCTTTGCATCC-
----------GCGCGGATCCATTTGCGACCCAAATTTGCGGCTGAAATGCATCGGCGCGGATGCAAAGCGGACTCGCCGC
GCGTCCTCTCGATGTCCGTCGCGTCCCCACCTGGCGGCCGCCCAACTACCGTGGTCAGCTTTATTAATGACGACCGCCCC
TGCAA-GC-CCACGCATCAACGACGGCAGCCGGCCTTTTTT-AATCCGAGCGTGT-GCTGGGGGGCCATCCTCATTCGCT
TCCAGACGCCT-CATCCCCATCTCGCCACCCT--GTGCT--CCCCAGCCAACGACAAATCCTAGCAAACCCTAGCGACTG
CAATGAGCCTCTTCTGCAGCAAGGGAAAGGGCAAGGGCCCCGCCGCCTCTCCCGCC------------------TCGTCT
TCTTCCTGCCGGCCCAGGCAGCGCATTGTCGTCCCAGTGCACCAGGCAAAGTGGCACTGGGAGCACCGCGTCCCC-
>chr2D_1870
AGTGT---------------------------------------------------------------------------
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----------------------------------------GTAAGAGCAACTCCAGCAC----ATCCATTTCGTCCATCA
CCGTACGTTTGGGCCGCCGCGGACAAAAGTGCTGGCCCAACACGCCGACTCATTTTTAAAA-----------TGCGTCCG
CTTCGTGTTCACGCAGACCCATTTGCGGCCAAAAATTACGGCTGAAATGCGTCGGCGTGGACGCGAAGCGGATACGCCAC
GCGTCCTTTCGGTGTCCGCCATGTCCCCACCTGGCGGCCACCGAACTACCGTGGCCGTCTTTATTAATGACGACTGCCCA
CCGC-GGGTCCAAGCGTCAACGACGGCGGTCGGCCTTTTTT-AATCCGAGCATGA-GGTGGGGGGCCGTCCTCATCCGCT
TCCAGACGCCTCCATCCCCATCTCACCACCCACGGTGCT--CCCCGTCGGCGA-----------CAAATCCTAGCCACCG
CCATGGGCTTCATCTCCGACATGGACAAGGGCAAGGCCTCCGCCGCCCCTCTCCCCCGCCTCCCCCCGCCTCCGCCGGCG
TCTTCCCACCGACCTCGGCAGCGCGTCAACGTCCCAGTGCACCAGGCAAAGTGGCACTGGGAGCACCGCGTCCCC-
>chr1A_1877
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-----------------------------------------TAAGAGCAACTCCAAAGGGGAGACCCATTTTGTCCACCG
CTGTCCGTTTGGGTCGCCGTGGACAAATGTGATGGCCCAACGCGTCGACCCATTCCTACAA-----------CGCGTCC-
----------ACGCGGACCCATTTCCGACCCAAATTTGCGGCTGAAATGCTTCGACGCGGATGT-----------GCCGC
GCGTCCTCTCGGTGTTTGTCGTGTCCCCACACAGCGGCC-CCCAACTACCTCTGTCGTCTTTATTAATGACGATGACCGA
CCTCGGGC-CCACGCATCAGCGAGGGCGGTCGGCCTTTTTTTAATCCGAACATGCAGTGGGGGGGGCGTCCTCATCCTCA
TCCAGACGCCC--GTCCCCATCTAGTCA-CCC-CTGTGCTCCCCCATCGGTGA-----------CAAACCCTAGCCAT--
-CATGGGCTTCTTCTCCGGT------AAGAACAATGGCCCGTCCCGCAAGTTCG--------CCCCCGCCCCTGCCGGCG
TTTTCCCGTCGGCCTCAGCAGCGGATCAGCGTCCCAGTGCACCAGGCAAAGTGGCACT------------------
>chr5D_1879
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-------------------------------------------AGAGCAACTCCAACGCAGATACCCATTTTGTCTGCCA
CCGTCCGTTTGGGTCGCCTCGGACCAAAGTGCTGGCCCAACGCGTCGACCCATTCGCATAA-----------CGCATCT-
----------GCGTGGACCCATTTGCGGTCCAAATTTGAGGCTGAAATGCGTCGGTGCGAATGC-----------ACCGC
ACTTCCTCTCGGTGTCCGCCGCGTCCCCACCTGGCGGTCACCCAACTACCGAGGTCGTCTTTATTAATGACGACCGCCCA
CCGCAGGC-CCATGCGTTAGCGACGGCGGACGACCTTTTTT-AATCCGAGCGTGC-GGTGGGGGGCCGTCCTCATCCGCT
TCCAGACACCCCCGTCCCCATCTCGCCACCCCACTGTGCTCCCCCATCGGCGA-----------CAAACCCTAGCCACCG
CCATGGGCTTCTTCTCCGGC------AAGGGCAAGGGCCCCGCCGTCCCTTTGCCCCGCCT-CCCCCGCCTCCGTCGGCG
CCTTCCCACGGGCCTCGGTAGCACGTGACCGTCCCAGTGCACCAAGCGAAGTGGCACTGGGAGCACCACGTCACCC
>chr5A_1883
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-----------------------------------------------CAACTCCAATGCAGGTACCCATTTCGTCTGCCG
CCGTCCGTTTTGGTCACCATGGACAAAAGTGTTGGCCCAACGCGTCGACCCATTCCCGAAA-----------CGCGTCT-
----------GCCCGGACCCATTTGCGGCCCAAATTTGCGGCGGGAATGCGTCGGTGCGGACGCGAAGCGGACGCGCCGT
GGGTCCTCTTGATGCCCGTCGCGTCCCCACCTGGCGGCCGCCCAACTACCGCGGTCATCTTTATTAATGATGATCGCCCA
CCGTGGGC-CCACGCATCAGCGATGGCGGTCGGCCTTTTTT-AATCCGAGCGTGC-GTTGGGGGGCCGTCCTCATCCGCT
TCCAAACGCCCTCGTCCCCATCTCGCCA-CCCACTGTGCTTCCCTATCGGCGA-----------TAAACCCTAGCCACCG
CCATGGGCTTCTTCTCCGGC------AAGGGCAAGGCCCCCGCAGGCTCT-------------CCCCGCCTCCGCCAGCG
TCTTCCCGCCGGCCTCGGCAGCGCATCAGCGTCCCAGTGCACCAGGCAAAGTGGCACTGGGAGCACCACGCCCCC-
>SNPs
-------S---------------------------------------------------------------------S-S
-------------------------------------------------------------------S-----S------
-----------S------------------------------S-------------------------------------
--S------------------------S---------------SSSSSSSSSS-SSS-S-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--------------------S-S-----------------------------------
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----------------SSS---------------------------S---------------------------------
----------------------SS--------------------------------------------------------
--------S------S-S--------------------------------------------------------------
-------S----------S-------------------------------------------------------------
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-----SS---S---S------S-----S----------------------------------------------------
-----------------------------------------S-------------------S---------------SS-
----S-S--------S-S-----------------------------------S-----S-----S------SS---SS-
-----------------------S----------------------S-----------S---------------------
----------------S---S-----------------------------------------------------------
------------SSS--------S--S------S---------S-SS-----S----------------------S----
S----------S----------------SS---S---------S--S----S-----------S-S---S----------
----------------------------S----------S-------S------------------S-------------
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------------SS-----------------S------------------------------------------S-----
------------S-------------------------S-----------------------------S----S----S-
---------------S--------S-------------------------------------------------------
--S---------------------------------------------S-------------------------------
--S-----------------------------------------------------------------------------
------------S-------------------------------------------------------------------
-------------S---------------------------SS------------------------S-----------S
-----------------------------------------------------------S----------------
>forward_737
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-----------------------------------------------------------------------------ACA
GACTTCCTCAACAGCCG---------------------------------------------------------------
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>reverse_2413
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------------TGTCCTCATCTCGCCACTCA------------------------------------------------
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