>input_sequence_80498
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------------------ATGCTGGCCGACGGGCCGGTTACCGGCGACTATGATCTCGCCCCCGCGAACTGGGGGG-ACC
ATGATCACCCGCAAATGGACTATGCCGATGAGATCGGCCGCAAGATTGGCAGACTTGAG------GGAGACGCCCTGCGC
TTCGACATCGACCTCCACTTGCCGTCACTGGTGGTATGTTTGGTTTTCAGCCATCCACAGGCCCTAATCCGCGCGTGCAA
AGAGGCCGACGCTGCTGCAGGAGCTCTCGC-GGCACCCGGTCAGGAATGCGCAATTTGCCATTTGG-ACTTGGAGACTGG
TGACGAGGAGATCG-TCAGGCTGCCGTGCTTCCACGCCCATGCCTTCCATACCCCATGCATCAAACAGTGGTTCTATCAA
--------CAGTCAAAGTGCCCAATTTGTCGGCGTGAGGTGCCGGATTACTTCGGCT--------TTAGATTCTGA----
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>chr3A_1_TraesCS3A01G459400
CAGGGAGCGAAAGGGAAAGTCTTCAAGCTCGTCATACATATCTCTTCCAACGGTCACAGACTCACAGGCAGTGGGCCCAC
TTTCCATTTCCAGATGGAGACCCTCAGCAGATTCCTTCAGTTTACAGCCGGTCC-----------TCCTTCCTTCCTTCG
CCTATAAGAAATCGCGTTCCTTGGAGAGACTAGG-----------------------GGAGAGAGAGAGGGAGAGAGAGA
GAGGGAGAGAGAGAGAGAGAGAGAGGGAGAG-------------------------------------------------
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------------------------------------------GGAGGGAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAGAG
AGAGA--GAGAAGGCGCCGG-------GGCCATGGTATTGCCACCGTGGCCGCACGCGCCGGAGGTCATGGAGACGCACG
TCTACGGCGGTGGGAGAGTTCTCCTACGCGTCTTCCACCACCGCAAGCCGTGCCATCTCCCGAGCTCCCTGCGCATCCAT
GGCGACGTGGTTGTGTCGCATGGGAGGCGCGGGATCGGGACCCACGCCAACTCGCCGGCGGGGTGGAGCATCGATTCCTC
GTTCGACGAC---CGGGCGCCCTTCGACCACCGCG-TAGAGGTCGCGGATCCTGCTGTCTTCCGGAACTACGAGGCCTGC
CGCGACCTCATCCACCGCATGCTGGCCGACGGGCCGGTTACCGGCGACTATGATCTCGCCCCCGCGAACTGGGGGG-ACC
ATGATCACCCGCAAATGGACTATGCCGATGAGATCGGCCGCAAGATTGGCAGACTTGAG------GGAGACGCCCTGCGC
TTCGACATCGACCTCCACTTGCCGTCACTGGTGGTATGTTTGGTTTTCAGCCATCCACAGGCCCTAATCCGCGCGTGCAA
AGAGGCCGACGCTGCTGCAGGAGCTCTCGC-GGCACCCGGTCAGGAATGCGCAATTTGCCATTTGG-ACTTGGAGACTGG
TGACGAGGAGATCG-TCAGGCTGCCGTGCTTCCACGCCCATGCCTTCCATACCCCATGCATCAAACAGTGGTTCTATCAA
--------CAGTCAAAGTGCCCAATTTGTCGGCGTGAGGTGCCGGATTACTTCGGCT--------TTAGATTCTGAGATG
AAATATATAC---------CAGATCCT--------------GCCGAACAAATTTATA-TAAATTCTTTAGATGAAGAT--
GGATTAAATCAGTAC--TA----GTCTATA------GATCTTGCATTCCTATCAAAGATGAGCTGAAAGATTTAGATGAA
GGTTCTATCAAAGACGAGCTGTTAATAGATTACATAGCCGATCGATGA-CAATTCATATATTTTATATTCTGTAGCTGAA
GATGGATTCACAGTGAGCATATTA--------------GTCTATAGATCGAAAATGAACATT-CCTGTGTGACATATGCG
AAAATGAGCAATTGAATTGTCCTTC-GAGAGATAACATGGTATGAATGAGTGGAGGATTTTTCACAAATTTCAGCGTGAT
GATTTCTTTTTATCAAACAGTTTCAGCTTGTTTCTTTCAGTTCTTTTTTAAAGCATCAA-CTACTAGAACATAAACGATA
CGCACACACCCTGCACAGAAAACACTTAAAGGAAGGATCTTTCTGGAGCTTCGTAATTAACAAAATCACCACGTTTGCCT
TTCAAACCATGGGAACATTTCCTACCACAGGAAGAACAAGTTCTATATGAGATGGATAACAGAAACAGA-TACAAATCCT
GATATTTGATAATTGACGAGATGGGGGTACAAGTATCTCCACAGGACCTATGTTTGGTTCTCTTATTCCTCCAATCCTAA
AGCTCAAGATAGTAGTGCAAGCACAAGTCTTCACTTTTAAAACGGAGTTTGTGGGTGTATGATCGCTTTTCGTAGTACGA
CGCGGCTCTTCCCTAGGTTTGGTCTCTTTTCTTCAACCTACTTCAATACTTCAAATGGGTTTGGAAATCCAGGATACTAG
ATAATTGAAGGCGCGCGTTGCCACGCCCGTCTATTTATACGATAAAATGATAAAGAAATGTAAATAAATGCCACATGAAA
CACATTAAATTTGCATAAAGACAAACATATATATTATTCAAGGGAAAACTCAAGGTTCATGGATACAAATTGGCTTGGTA
TATGACAGCATAC
>chr3B_2
AG-GGAGCAAAAAGGAAAGTCTTCAAGCTCGTCATACATATCTCTTCCAACGG--------TCACAGACAGTGGGCCCAC
TTTCCGTTTCCAGTAGGAAACCCTCAGCAGATTCCTTCAGTTTACAGCCGGTCATGCGCGTGCGTTCCTTCCTTCCTTCG
CCTATAAGAAAGCGCGTCCCACGATCCGCCATGTTGCAGAGCTCAGTTCGTTTCGTTGGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGACATGGTGTTGCCACCGTGGCCGAACGCGGGGGAGGTTGGTAGGAAAGCATCTGATAAACCCTGC
TGAACAGTTGTGAAGATTTTGAATAGAAGGAGACTGAAGGTGTCCTCGTTTCATTTTTGGGCGGCAAATTAAACCACACC
ATTTTTGGTTTGTCTCTAAACTGTATCTAGTCTTCACCGACGTTAATTATAGGGAGCAAAAGGGAAAGTCTTCAAGCTCA
TCATACATATCTCTTCCAGCGACCACAAACAGTGGGCTCCGTTTCCAGTAGGAAACCCTCAGCAGATTCATTCAGTTTAC
AGCCGGTCATGCGCGTGCCTTCCTTCATTCGCCTATAAAAGAAGAGAGAATTCCTTATTTGGCCCTTTCTTAAAATTTGC
TTCCTTATTTGATCCAAAATAAAATTTTCTTTCCTATTTGACACCTAAAGTAAATTTTATTCCTTATATGACATTTCCGT
CCATTTTAGGCACTAACGGTGTTAAGTGTGAGGTAAAAAGACCATTTTACCCCTACGTGCAAAGCCAGCCTCAAACAAGC
ACACAGATAACTTGATTGATTCTTGTACGCGCTTGACAAATTTTCTAGCAGTGGCACACGCACGTACAGGTGAACGCGTT
GTTGGCTGCAGTCACTCCCAGCTACCGGGCCCTGTGAGTGGTGTTCGGTTGCTCGTCGCCAGCAGTACGCGTTCTCATCG
TTCTCATCGTCCTCGACTCCTCGTTTTCCTATCGTGTGCGTGGTGTATAGCTGCCGGTATGCGTAGTGTACTACAGTACT
TATTTCAATGATTTATTACGCGCATTGTACTAGTTTTAACGTAGAAAAATTAGTAGTACGTGTAATACTTTGGAACGTGC
GTCCAGCCTCGAAGGCGTCGTGGTTGTAGATGTCAACGCTGTGGTATGTCTATGGCCTCACTCGCGCTCAGACGTCGCTA
TGCTATGTGACTACCGCTAGCCCATCTTAAATCGTGACTGCCGCGCACTGCAGGCAATGCCGGCGTCGTGCCCGTGGAGC
CATGTCAGCATGGACGCCCAAGGCCGAACCCACCTCAGCGCCGTGGGTCGTCCACTCCACATCCGCACTCGCACGTGATG
AAATAACCAAAATATGGTATATGGTATTGTACTTATTCGCAAAAAAAGTTACTATACTATCATATATACGCTAGTACAAG
TTTTACGGATGTTTTGTACGTACACACACATACCAGTTTATCGAAGGAGCAAATTTGAGCATACATATGCATGCACAACA
TCCGTTGACCATCTCTAAAACATGAGTGAACTGATTAATTTTTTACAGATTGCACTATGGGCAAAATGGTATTTTCACCT
CACACTTAACACCGTTAGTACCTAAAATAGACGGAAGTGTCATATAAGGAACAAAATTTATTTTAGATGTCAAAAAGGGA
AGAAAATTTATTTTGAGCCAAATAGGGAAGCAAAATTTAAGAAAGGGCCAAACAAGTCATTCTCTCATAAAAGAAACCGC
GTCTCACAATCTACCATGGTGCAGAGCTCAGTTCGTTTCCTTGGAGA---------------------------------
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-------------------------------------------------------------------------GAGAGAG
AAAGA--GAGCAGGCTCCGG-------GGCCATGGTGTTGCCACCGTGGCCGCACGCGGCCGAGGTCACGGAGACGCACG
TCTACGGCTGTGGGAAAGTTCTTTTGCGCGTCTTCCACCACCGCAAGCCGTGCCATCTCCCAAGCTCCCTGCGCATCCAC
GGCGACGTGGTTGTGTCACACGGGACGCGCAGGATCGGGGCCCACGCCAACTCGCCGGTGGGGTGGGGCATCGACGCCTT
GTTCGACGAT---CGGGCGCCCTTCGACCACCGCG-TCGAGGTCGCGGACCCTGCCGTCTTCCGGAACAATGAGGCCTGC
CGCGACCTCATCCACGGCATGCTGGCCGACGGGCCGGTGACCGGCGATTATGATCTCACCCCAGCGAATTGGGGGG-ACC
ATGATCACCCGCAAATGGACTACGCCGATGAGATCGGCCGCAAGATCGGTAGACTTGAC------GGAGATGCCCTGCGC
TTCGACATTGACATCCACCTGCCGTCACTGCTGGTATATTTGGTATTCAGCCATCCACAGGCCATAATCCGCGCATGCAA
ACAGGCCGACGCTGCTGCAGGAGGTCTGGC-AGCACCAGGCCAGGAGTGCGCGATTTGCCATTTGG-AGTTCGAGCCTGG
TGACGAGGAGATCG-TCAGGCTGCCGTGCTTCCACGCCCATGCCTTCCATACCCCGTGCATCAAACGGTGGTTCTATCAA
--------GAGTCGAAGTGCCCAATTTGCCGGCGTGAGGTGCTGGATTACTTCGGCT--------TTAGATTCTGAGATG
AAATATATATCAGATGATTCAGATCCT--------------GCCGAACAAATTCATA-TAAATCCTTTAGGTGAAGAT--
GGATTCAATCAGTAC--TA----GTCCATACTCCATGATCTTGCATTCCTATCAAAGATGAGCTGAAGGCTTTAGATGAA
GGTTCTATCAAAGACGAGCTGTTAATAGATTACATAGCTGATCGATGAACAATTCATATATTTTATATTCTGTAGCTGAA
GATGGATTCACAGTGAGCATATTA--------------GTCTATAGATCGAAAATGAACATT-CATGTATAGCATATGCG
AAAATGAGCAATTGAATTGTCCTTC-GAGAGATACCATGGTATGAATGAGTGGAGGATTTTTCACAAATTTCAGCGTGAT
GATTTCTTTTTATCAAACAGTTTCAGCTTATTTCTTTCAGTTCTTTTTTAAAGCATCAAAGTACTAGAACATAGACGATA
CACACACACCCTGCACAGAAAACACTTAAAGGAAGGATCTTTCTGGAGCTTCGTAATTAACAAAATCACCACATTTGCCT
TTCAAACCATGGGAACATTTCCTACCACAGGAAGAACAAGTTCTACATGAGATGGATAACATAAAACAAGCACAAATCCT
GATATTTGATAATTGACAGGATGGGGGTACAAGTAGCTCCACGGGACCTATGTTTGGTTCTCTTATTCCTCCAGTCCTAA
AGCTAAAGATAGTAGCGCAAGCACAAGTCTTCACTTTTAAAACGGAGTTTGTGGGTTTACGATCGCTTTTCGTAGTACGA
TGCTGCTCTTCCCTAGGTTTGGTCTCTTTTCTTC----------------------------------------------
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>chr3A_4
---GGAGCGAAAGGGAAAGTCTTCAAGCTCGTCATACATATCTCTTCCAACGG--------TCACAGGCAGTGGGCCCAC
TTTCCGTTTCCAGATGGAGACCCTCAGCAGATTCCTTCAGTTTACAGCCGGTCC-----------TCCTTCCTTCCTTCG
CCTATAAGAAATCGCGTTCCTTAGAGAGACTAG-----------------------------------------------
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-------------------------------------------------------------------------GAGAGAG
AGAGA--GAGAAGGCGCCGG-------GGCCATGGTATTGCCACCGTGGCCGCACGCGCCGGAGGTCACGGAGATGCACG
TCTACGGCGGTGGGAGAGTTCTCCTACGCGTCTTCCACCACCGCAAGCCGTGCCATCTCCCGAGCTCCCTGCGCATCCAC
GGCGACGTGGTTGTGTCGCATGGGAGGCGCAGCATCGGGACCCACGCCAACTCGCCGGCGGGGTGGAGCATCGATTCCTC
GTTCGATGAC---CGGGCGCCCTTCGACCACCGCGGTAGAGGTCGCGGATCCTGCTGTCTTCCGGAACTACGAGGCCTGC
CGCGACCTCATCCACCGCATGCTGGCCGACGGGCCGGTTACCGGCGACTACGATCTCGCCCCCGCGAACTGGGGGG--CC
ATGATCACCCGCAAATGGACTACGCCAATGAGATCGGCCGCAAGATTGGCAGACTTGAG------GGAGACACCCTGCGC
TTCGACA-TGACCTCCACTTGCCGTCACTGCTGGTATGTTTGGTTTTCAGCCATCCACAGGCCCTAATCCGCGCGTGCAA
AGAGGCCGACGCTGCTGCAGGAGCTCTCGC-GGCAC-----CAGGAATGTGCAATTTGCCATTTGG-ACTTGGAGACTGG
TGACGAGGAGATCG-TCAGGCTGCCGTGCTTCCACGCCCATGCCTTCCATACCCCGTGCATCAAACAGTGGTTCTATCAA
--------CAGTCAAAGTGCCCAATTTGTCGGCGTGAGGTGCCGGATTACTTCGGCT--------TTAGATTCTGTGATG
AAATATATAC---------CAGATCCC--------------GCCGAACAAATTTATA-TAAATTCTTTAGATGAAGAT--
GGATTAAATCAGTAC--TA----GTCCATA------GATCTTGCATTCCTATCAAAGATGAGCTGAAAGATTTAGATGAA
GGTTCTATCAAAGACGAGCTGTTAATAGATTACATAGCCGATCGATGA-CAATTCATATATTTTATATTCTGTAGCTGAA
GATGGATTCACAGTGAGCATATTA--------------GTCTATAGATCGAAAATGAACATT-CCTGTGTAACATATGCG
AAAATGAGCAATTGAATTGTCCTTCCGAGGGATAACATGGTATGAATGAGTGGAGGATTTTTCACAAATTTCAGCGTGAT
GATTTCTTTTTATCAAACAGTTTCAGCTTGTTTCTTTCAGTTCTTTTTTAAAGCATCAA-CTACTAGAACATAGACGATA
CGCACACACCCTGCACAGAAAACACTTAAAGGAAGGATCTTTCTGGAGCTTCGTAATTGACAAAATCACCACGTTTGCCT
TTCAAACCATGGGAACATTTCCTACCACAGGAAGAACAAGTTCTATATGAGATGGATAACAGAAACAGA-TACAAATCCT
GATATTTGATAATTGACGAGATGGGGGTACAAGTATCTCCACAGGACCTATGTTTGGTTCTCTTATTCCTCCAATCCTAA
AGCTCAAGATATTAGTGCAAGCACAAGTCTTCACTTTTAAAACGGAGTTTGTGGGTGTATGATCGCTTTTCGTAGTACGA
CGCTGCTCTTCCCTAGGTTTGGTCTCTTTTCTTCAACCTACTTCAATACTTCAAATGGGTTTGGAAATCCAGGATACTAG
ATAATTGAAGGCGCGCGTTGCCACGCCCGTCTATTTATACGATAAAATGATAAAGAAATGTAAATAAATGCCACATAAAA
CACATTAAATTTGCATAAAGTCAAACATATATATTATTCAAGGGAAAACTCAAGGTTCATGGATACAAATTGGCTTGGTA
TATGACAGCATAC
>chr3D_133
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----------------------------------------------------CC-----------TCCTTCCTTCCTTCG
CCTATAAGAAATCGCGTTCCTTG---------------------------------------------------------
----------------------GAGGGACTG-------------------------------------------------
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------------------------------------------GGAGA---------------------------------
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-------------------------------------------------------------------------GAGAGAA
AGAGA--GAGCAGGCTCCGG-------GGCCATGGTGTTGCCACCGTGGCCGCACGCGCCGGAGGTCACAGAGACGCACG
TCTACGGCTGTGGGAGAGTTCTCCTACGCGTCTTCCACCACCGCAAGCCGTGCCATCTCCCGAGCTCCCTGCGCATCCAC
GGCGACGTGGTTGTGTCGCACGGGAGGCGCAGGATCGGGACCCACACCAACTCGCCGGCGGGGTGGAGCATCGATTCCTC
GTTCAACGAC---CGGGCGCCCTTTGACCACCGCG-TCGAGGTCGCGGATCCTGCTGTCTTCCGGAACAATGAGGCCTGC
CGCGACCTCATCCACCGCATGCTGGCTGACGGGCCGGTGACCGGCGACTACGATCTCGCCCCCGCTAACTGGGGGG-ACC
ATGATTACCCGCAAATGGACTACGCCGATGAGATCGTCCGCAAGATCGATAGACTTGAG------GGAGACGCCCTGCGC
TTCGACATCGACCTCCACCTGCCGTCACTACTGGTATGTTTGGTTTTCAGCCATCCACAGGCCCTAATCCACGCGTGCAA
AGAGGCTGACGCTGCTGGAGGAGCTCTCGC-GGCACCCGGTCAGGAATGCACGATTTGCCATTTGG-ACCTGGAGACTGG
TGACGAGGAGATCG-TCAGGCTGCCGTGCTTCCACGCCCATGCCTTCCATACCCCATGCATCAAACGGTGGTTCTATCAA
--------CAGTCGAAGTGCCCAATTTGTCGGCGTGAGGTGCCG------------------------------------
---------------------------------------------AACAAATTCATA-TAAATTCTTTAGATGAAGAT--
GGATTAAACCAGTAC--TA----GTCCATA------GATCTTGCATTCCTATCAAAGATGAGCTGAAGGCTTTAGATGAA
GGTTCTATCAAAGACGAGCTGTTAATAGATTACATAGCCGATCGATGAACAATTCATATATTTTATATTCTGTAGCTGAA
GATGGATTCACAGTGAGCATATTA--------------GTCTATAGATCAAAAATGAACATT-CATGTATAACATATGCG
AGAATGAGCAATTGAATTGTCCTTC-GAGAGATACCATGGTATGAATGAGTGGAGGATTTTTCACAAATTTCAGCGTGAT
GATTTCTGTTTATCAAACAGTTTCAGCTTGTTTCTTTCAGTTATTTTTTAAAGCATCAA-GTACTAGAACATAGACGATA
CACACACACCCTGCACAGAAAACACTTAAAGGAAGGATCTTTCTGGAGCTTCGTAATTAACAAAATCACCACATTTGCCT
TTCAAACCATGGGAACATTTCCTACCACAGGAAGAACAAGTTCTATATGAGATGGATAACCGAAACAGA-CACAAATCCT
GATATTTGATAATTGACGGGATGGGGGTACAAGTGTCTCCACGGGACCTATGTTTGGTTCTCTTATTCCTCCAA-CCTAA
AGCTAAAGATAGTAGTGCAAGCAGAAGTCTTCACTTTTAAAACGGAGTCTGTGGGT--------------CGTAGTACGA
CGCTGCTCTTCCCTAGGTTTGGTCTCTTTTCTTCAACCTGCTTCAATACTTCAAATGGGTTTGGAAATCCAGGATA----
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>chr3A_669
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-------------------------------------------------------------------------GAGAGAG
AGAGA--GAGCAGGCGGCGG-------GGCCATGGTGTTGCCACCGTGGCCGCACGCGGCGGAGGTCACGGAGACGCACG
TCTACAGCTCCGGTAGAGTTCTCCATCGCGTCGCCGGCCACCTCTCTCCGAGAAATCTCCCGAGCACCCTTCGCATCCAC
GGCGACGTGGTTGTGTCGCACGGGACGCGCAGGATCGGTGCCCACGCCAACTCGCCGGTGGGGTGGGGCATCGACGCCTC
GTTCGACGAC---CGGGAGCCGTTCGACCACCAAG-TCGAGGTCGCGGACCCTGCCGTCTTCCGGAACTACGAGGCCTGC
CGCGACCTCATCCACGGCATGCTCGCCGACGGGCCAGTGACCGGCGACTACGACCTCGCCCCTGGGAACTGGGGCG-ACC
ATCTTCACCCGCAAATGGACTTCGTCGATGAGATCGGCCGCAAGATCGATAGACTTGACCTTGAAGGCGACGTCTCGCGC
TTCGACATCGACATCCACGTGCCGTCACTGCTGGTATGTTTGGTTTACAGCCATCCACAGGCCCTAATCCGCGCCTGCAA
AGAGGCCGACGCTGCTGCAGGAGCTCTGGC-GGCACCCGGTCAGGAATGCGCGATTTGCCATTTGG-AGTTGGAGACTGG
TGACGAGGAGATCG-TGAGGCTGCCGTGCTTCCACACCCACGTCTTCCACATCCCGTGCATCAAAGGGTGGTTCTATCAA
--------GAGTCAAACTGCCCAATTTGCCGGCGTGAGATGGTGGATTACTTCG--------------------------
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>chr3B_669
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-------------------------------------------------------------------------GAGAGAG
AGAGA--GAGAAGGCGCGTTGGGCCATGGCGATGGCGGTGCCACCGTGGCCGCATGCTGCAGAGGTCACGGAGACTCACG
TCTTCGACTGTGGGGGTGTGTCCCTGAGCACTATCGTCCACCGCAAGCGGGCAGATCTCCCGAGCACCATGCGCATCCAC
GGCGAAGTGTTTGTGTCGCACGGGAGGCGCAAGATCGGGAGCCAGGCCAACCCGCCAGGAGGGTGGAGCATCCACGCCTC
ATTCCACGATGTACGGGCGCCCTTCGACCACCGCG-TCGAGGTCGCGGACCCTGCGGTCTTCCGCAGCTACGAAGCCTGC
CACAACCTCATCTATGGGATGCTCGCCGACGGGCCGGTGACTGGCGAGTACGACCTTGCCCCCGCGAACTGGGGGG-ACC
AGGATTTCCTGCCAATGGACTTCGCCGATGAGATCGGCCGCCAGATCGACGGCCTTGAG------GGCGTC---CTCCGC
TTCGACATCGACATCCACCTGCCCTCACTACTGGTATGTCTGGTTCACAACCATCCACTGGCCTTAATCCGCGCCTGCAA
AGAGGCGGGCGCTGCTGCCGGAACTCTGGC-GGCACCAGGCCAGGAGTGCGTGATTTGCCATTTGG-AGTTGGAGCCTGG
TGATGAGGAGATCG-TCAGGCTGCCGTGCTTCCACACCCATAGCTTCCATACCTCGTGCATCAAACCGTGGTTCTACCAA
--------GAGTCAAGGTGCCCAACATGTCGGCGTGAGGTCATGGATTACTTCAGCT--------TTACATTCTGAGATG
AAATAGATCTCGAAAGCAAAGATGAGCAGTTGATCATAGCAGCCGAACAAATTCATA-TATAATCTTTAGATGAAGATAT
GGATTCAATGAGCAG--TAGTCCATATATA------GATCTTGCGGTCCTATCAAAGATGAGCTGAAGGCTTTAGATGAA
GGTTATATCAAAGAGGAGCTGTTGATAGGTTACATATATAC-CGATGAACAATTCATATATTTTATATTCTGTAGCTGAA
CATGATT---CAGTGAGCACGAGGCTTCTGTAGCTGAGGTCTGTAGATCGAATATGAACATTTCATGTATGACATATCCG
AAAATGAGCAATTCAGTTGGCCTTC-GAGCGATACCATGATA--------TGGAGGATTTGTCACAAATTTCAGTGATGA
---TTTTTTTTATCCAACAGTTTC--------------------------------------------------------
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>chr3B_669
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-------------------------------------------------------------------------GAGAGAG
AGAGATGGAGCAGGCGCCGG-------CGCCATGGTGTTACCACCGTGGCTGCACACAGCGAAGGTCACGGAGACGCACG
TCTACGGTGCTAGGAGAGTTCTCCTGCGCGTCTTCCACCACTGTAACTCGGCCCATTTGCCGAGCTCCCGGCGCATTCAC
GGCGACGTGGTTGTGTAGCACGGGAGGCGCAGGATCAGGACCCATGTCAACTCACCAGCGGGGTGGAACATCGATGCCTC
ATTCGACGAC---CCGGAGCCGTTCGACCACCGCG-TCGAGGTCGTGGACCCTGCCGTCTTCCGGAACTACGAGGCATGT
CGCGACCACATCCAGGGCATGCTCGCCGACGGGCCGGTGACCGACGACTACGACCTCGCCCCCGGGAACTGGGG-G-ACC
ATGATCACCCGCAAATGGACTTCGCCGATGAGATCAGCCGCAAGATCGATAGCCTTGAG------GGCGTCGCCCCGTGC
TTCGACATCGATATCCATGTGCCGTCACTGATGGTATGTTTAGTTTACAGCCATCCACAGGCCCTAATCTGCACGTGCAA
AGTGGCTGACGCTGCTGCAGGACCTCTGGC-G-CACCCGGTCAAGAATGCGTGATTTGCCATTTGG-AGTTGGAGGCTGG
TGACGAGCAGATTG-TCAGGCTGCCATGCTTTCAAACCCACGCCTTCCATATCCCGTGTATTAAAGGGCGGTTCTATCAA
AACTTCATGAGTTAAAGTGCCCAATTT-CCGGCGTGAGATGATGGATTAGTTCAGCT--------TTAGATTATGAGATT
AGATA---------------------------------------------------------------------------
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>chr3D_669
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-------------------------------------------------------------------------GAGAGAG
AGAGA--GAGCAGGCGGCGG-------GGCCATGGTGTTGCCACCGTGGCCGCACGCGGCGGAGGTCACGGAGACGCACG
TCTACAGCTCCGGTAGAGTTCTCCATCGCGTCGCCGGCCACCTCTCTCTGAGCAATCTCCCGAGCACCCTGCGCATCCAC
GGCGACGTGGTTGTGTCGCACGGGACGCGCAGGATCGGTGCCCACGCCAACTCGCCGGTGGGGTGGGGCATCGACGCCTC
GTTCGACGAC---CGGGCTCCGTTCGACCACCACG-TCGAGGTCGCGGACCCTGCCGTCTTCCGGAACTACGAGGCCTGC
CGCGACCTCATCCACGGCATGCTCGCCGACGGGCCAGTGACCGGCGACTACGACCTCGCCCCTGGGAACTGGGG-GGACC
ATCTTCACCCGCAAATGAACTTCGTCGATGAGATCGGCCGCAAGATCGATAGGCTTGACCTTGAAGGCGACGTCTCGCGC
TTCGACATCGACATCCACGTGCCGTCACTGCTGGTATGTTTGGTTTACAGCCATCCACAGGCCCTAATCCGCGCCTGCGA
AGAGGCCAACGCTGCTGCAGGAGCTCTGGCGG-CACCCGGTCAGGAATGCGCAATTTGCCATTTGG-AGTTGGAGACTGG
TGACGAGGAGATCG-TCAGGCTGCCGTGCTTCCACACCCACGTCTTCCACATCCCGTGCATCAAAGGGTGGTTCTATCAA
--------GAGTCAAAGTGCCCAATTTGCCGGCGTGAGATGGTGGATTACTTCGAATTTTGAAGGTTTGATTCTGAGATG
AAATAGATCTCGAGCGGATCAATTAGGTAGCC-------------AACAAATTCATACTATATTCTTTAGATGAAGAT--
GGATTCAGTGAGCAGAGTAGTCCGTATATA------GATCTTGCAGTCCTATCAAAGATGAGCCGA--------------
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>chr3A_676
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AGAAA--GAGCAGGCGCCGG-------CACCATGGTGTTGCCACAGTGGCCGCACACAGCGGAGGTCATGGAGACACACG
TCTACGGCTGTGGGAGAGTTCTCCTACGCGTCTTCCACCACCGTATGCCGACCCATCT-ACGAGCTCCCGGCACATTCAC
GGTGACATGGTTCTGTCGCACGGGAGGTGCAGGATCAGGACCCACACCAACTCGCCGGCAGGGTGGAGCATCGACGCCTC
GTTCGACAAC---CGGGCGTCGTTCAACCACTGCG-TCTAGGTTGCGGACCCTACTGTCTTCCGGAACTACGAAGCCTGC
CACGACCTCATCCACAGCATGCTTGCCGACGGGCCGGTGACCGGCGACTATGACCTCGGCCCCATGAACTGGGGGG-ACA
ATGATCACCCGCAAATGGACTTCGCCGATGAGATCAGCCACAAGATCGATAGCATTGAG------GGCGTGGCCCCGTGC
TTCGACATCAACATCCACGTGTCGTCACTGCTGGTATGTTTGGTTTACAGCCATCCACAGGCCCTAATCTGCACGTGCTA
AGAGGCCGACGCTGATGCAGTAAATCTGGC-G-CACCCGGTCAGGAATGCGTGATTTGCCATTTGG-AGTTGGAGACTGG
TGAAGAGGACATTTTTCAGTCTGCCGTGCTTCCAAACCCACGCCTTCCACATCCCATGCATCAAAGGGTGGTTCTATGCA
A-------------------------------------------------------------------------------
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>chr3A_727
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------------------------------------------------------------GGATGTCACGGAGACACACG
TCTACGACTATGGGAGAGTTCTCCTGCGCGTCTTCCACCACCGCAAGCCGACCCATGT-CCAAGCTCCTTGCGCATTCAC
GGCGACGTGGTTGTGTCGCACGTGAGGCCTAGGATCGGGACCCACGCCAACTCGCCGG----GTAGAGCATCGACGCCTC
GTTCGATGAC---CAGGCGCCGTTTGGCCACCATG-TTGAGGTCACGGACCCTGCCGTCTTCCGGAACTACGAGGACTGT
TGCGACCTCATCCACGGCATGCTCGCTGATGTGCCGATGACCGGCGACTAGGACGTCACCCCCGGGAACTGGGGGG-ACC
ATGATCGCCCGCAACTGGACTTCGTAGACGAGATCGGCCGCAAGATCGATAGCCTTGAG------GGCGTCGCCCCACGG
TTCGACGTCGACATCCATGTGCCGTGACTGCTGGTATGTTTGGTTTACATCCATCGACATGCCCTAATCCGCGCATGCAA
AGAGGCTGACGCTGCTGCAGGACATCTAGC-GGTACCCAGTCAGGAATGCGTGATTTGCCATTTTGAAGTTGTAGACTGG
TGATGAGGAGATTG-TCAGGCTTCCA--------CACTCACGCCTGCAACATCCTGTGGATCAAAGGGTGGTTCTATCAA
--------GAGTGAAAGTGCCCAATTTGCCATTGTTATGTGATGGATTACTTCGGCT--------TTAGATTCTGAGATT
AGATA---------------------------------------------------------------------------
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>chr3B_728
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-------------------------------------------------------------GAGGTCACGGAGACGCACG
CCTACAACTGTGGGAGAGTTCTCCTGCGCGTCTTCCACCACCGCAAGCCGACCCATCTCCCCAGCTCCCTGCACATTCAC
GTCGGCGTGGTTCTGTCGCACGGGATGCCCAGGACCGGGACCCACGCCAACTCACCTGCAGGGTGGAGCATCAACGCCTC
GTG-GACAAC---CGGGCGCCGTTTAACCACCGCG-TCTAGGTCGCAGACCCTGGTGTCTTCCGGAACTACGAAGCCTGC
CGTAACCTCATCCACGGCATGCTCGTCGACGGGCCGGTGACTCGCGACTATGACCTCAGCCCCAGGAACTGTGGGG-ACC
ATGATCACCCGCAAATAGACTTCGCCGATTAGATCGACCACAAGTTCGATAGCCTTGAG------GCTGTCGCCCTGCGC
TTCAACATCAACATCAC---GTCGTCACTGCTGGTATGTTTGGTTTACAGCCATCCACAGGCCCTAATCTGCGCGTGCTA
AGAGGCCGACGCAGCTGCAGGACCTCTGGC-G-CATCCGGTCAGGAATGCGTGATTTTCCATTTGG-AGTTGGATACTGG
TGAGTAGGATATTG-TCAGGATGTCGTGCTTCCAAACCCACGCCTTCCACATCCCATGCATCAAAGGGTGGTTCTATCAA
--------GAGTCCAAGTGCCCAATTTTCCGGCGTGAGGTGATGGATTACTTCGGCT--------TTAGATTCTGAGATT
AGATA---------------------------------------------------------------------------
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>SNPs
SSS--------------------------------------------------SSSSSSSS-------------------
-----S--------------------------------------------------------------------------
---------------------------------S-----------------------------------S----------
---S------------S-SS-S------SS--------------------------------------------------
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----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
------------------------------S-------------------------------------------------
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----------------------S---------------------------------------------------------
------------------------------S-------------------------------------------------
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-------------------------------------------------------------------------S------
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---S----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------S-----------------------------------------------------------
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>forward_1807
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---------------------------GAGAGAGAGGGAGAGGGAGG---------------------------------
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>reverse_3514
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-------------------------------------------------------------------------AACGATA
CGCACACACCCTG-------------------------------------------------------------------
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-------------
