>input_sequence_80491
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--------------------------------------------------------ATGGAGCAGGG------CACGACG
ACGGCGCCGACGCCGCTACCGGAACTCGCCAAGGAGACAGGCAATTGCATCGCCGTTGTCGCCGCTGGAGGCTGCGCCTT
CTACTTCCTCAAGGGCCTGCGCAACTCCCCCACAGGTGGCCGCCTAGCCGGCGCCGCCCAGGCGGTCCGCGCAAACGCGC
CGCGAATCGGCGGCTGGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAAC---AAGGAC
GACCGCTTCAACACCATGATCTCATATGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGGCCACGCGCCGCCGCCTT
CTCCGGGATCAAGGGCGCCGTCTTCGGTGGGCTCGTAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTAC
CGGAACCGGAGAAGTGA---------------------------------------------------------------
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>chr2D_1_TraesCS2D01G084100
GTTTTTTATTTTCTTTTTCCTTTTTCCTTGGCAAGTTTTCAAGTTTTTTTGATTCATGACATTTATCAAAATTTGTGAAC
TCTTTTAAAATATAGTATTTTAAAATTCACGAATATTTTTTAAATCTATTGACCTTTTAAATATTTATGAACGATTTTTA
AATTCATGAACATTTATTTAGATTTGTGATCAATTTTAAATTCATGATTTTTTAAAACATTGCATTTTTTCAAATTCATG
ATTTTTTTTATTCTCATGAACATTTTTTAAAAATTTGATTCATGAATTGTTTGAAAAAAACCAATCTTTTTATACTCTTG
AACAATCTTTGGAAGACATATTCTTGAACAATCTTATGGTCCGGAGGTATGCCAGCAGCAGAGGATTGGCGAATAGAGGA
GCAGAACTGGCTGTTTCCAAAAAAAATTTAGAGAACTGGCTGTTTCCAAAGGAAGCAGAAAACCTGCTTTTCGTGTGGAA
TTGAACACTCAATAGCGACCAATTTCCCCAGTCTCGAGAGCTCAATGTGCCTGTCCGTAAATTTTAAGTCCGTGAATATT
TTTTGAACTTTTGAACTTTTTAGACCAATAATACTATTCTAAATTCATAAAAAATTGAATTCATTAA--TTTTTAATCTA
TAAAAATATGGTAATTCTTTTTGTCTTCAGAAGGGAGCGGAAAACCGGTATTTGATGTGGAGGTG---------------
-----------AGCACTCAGCAGCGACCGATTTTGCCCGTCGAAGCCAGCCGTGAGAGCTAAATGGGCTGGCCCATCTAC
ACCGTACCCTATGCA-----------------------------------------------------------------
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--AACTTTTCGTCTAAAAAAACTAAGGTGTGCAAACGTTGGAGAATC---------------------------------
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---------------------------------------G------GTGTCTTGGAGCAGACGTGAGAGGCGAGGAGTCC
AACACCATGACTGCCAACTTGTAACTCAACCCAACCGAGTTATAATAC--TCCCGAGATATCCCGTCGTCGCCAAGTTAT
CACTCAAGCCGCAGGCCACCACCGCCACGCCACTTCCGC-ACACCGCCGGAAACCGATGGAGCAGGG------CACGACG
ACGGCGCCGACGCCGCTACCGGAACTCGCCAAGGAGACAGGCAATTGCATCGCCGTTGTCGCCGCTGGAGGCTGCGCCTT
CTACTTCCTCAAGGGCCTGCGCAACTCCCCCACAGGTGGCCGCCTAGCCGGCGCCGCCCAGGCGGTCCGCGCAAACGCGC
CGCGAATCGGCGGCTGGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAAC---AAGGAC
GACCGCTTCAACACCATGATCTCATATGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGGCCACGCGCCGCCGCCTT
CTCCGGGATCAAGGGCGCCGTCTTCGGTGGGCTCGTAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTAC
CGGAACCGGAGAAGTGATCAATGGTGCCCTGAGGGTTTTTCCGGCTGCCTTTCCGATCGAGCTTGCCTATTGAACTTTTT
GTTACTGCTTGTACTCTGAAAGTCTGAATGTTACTAAAATCTAGTCGCTGTACGTAATTTTTGTTAGTACGCATTA----
--CTACATACATGGATCGTTC-TTTGTTTCTTGAGCTGTTGTTCCCGTTGTTCTACTCGTGACTCTCATCAGTC------
-----------AAGATGCGAGTGCGATCATCGTATAATCTAGAGCCC---------------------------------
----------------AACGAGGAG--ATGATGTAGGAGCTCGGCGGCATCATCTCCAGTCTCCACCGTACTCCTCAGCA
TCGAAGCCTTCTTTGAACTTCCATGGAATTATTAGAATTGACTATGCGGATCACTGATATTCATCGGTCAATTCTTCCTC
CATGTTCCTAAAAAAGTTCACGTCCAGATCAGTTGTCGTTCTTGGCATATATAGTTATACACGATCCACACCGGATGCAA
ATATTGGCCCAAAGCCATCGTTCTAGTTGTTTGGCGCACGGAAGAAGTGGCCGTACAAACCGTCAGGCCGGGCATC----
AGCATGTGCACACAGCCACACATGCATGATCTACACACCGCACAATCGGCAAAAACTAGCACATCGATGTCGAGGGCATC
TGCCAAACGCAGTTCCCTAATGGCTTTGAGAAGGTCTGCCGGCAACTTCAGCCGGCAGTCGTGCCAATGTTTCTACTATG
AGACTCTTAACATGTCACATCTGAACTTTGGTGTCATTACCCTGATCCTTGGTTGAGGCAACGGATATTCGACACTTTAG
ACCGATCACGGTGATTAAAGTGATCTAGCGGATTCTTTCGAAGGTGTGTGTGGCT---TGGTTTGCCCCGGTGGTGGAAC
ACCTTTCTCGCCCCTATCAGTCCACTTTTCTAAAAGGTCGTCATATTCATGGTGGGATCCACGGAAAAAAAAAACCTGGT
GGGATTCTGGCTCTTCATGAGATTTGGTCACGAGGTTACATCAAGGCGTATTCTTTAAG
>chr2B_439
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--------------------------------------GCTGTTTCCAAAGAGAGCAGAAAACCTGCTTTTCATGTGGAA
GTGAACACTCAACAGCGACCATTTTCCCCAGTCTTGAGAGCTCAATGCGCG-GTCCGTAAATTTTAAATCCGTGAATATT
TTTGAAC-----------TTTAGAACAATAATATTATTCTAAATTTATAAAAAAT-GAATTCATTAATCTTTATAATCTA
TAAAAATATGGTAATCTTTTTTGTCTTCAGAAGGGAGCAGAAAACAGATATTTGATGTGGAGGTG---------------
-----------AACACTTAGCAGCGATCGATTTT-CCCGTCGAAGCCAGTCGTGAGAGCTAAATGGGCCGGGCCATCCAC
CACCGTAAC-----------------------------------------------------------------------
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----------------------------GTGCAAACTTTCGAGAATC---------------------------------
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---------------------------------------GGTGTCCGTGTCTTGCAGCAGACGTGAGAGGCGAGGAGTCC
AACACCATGACTGCCAACTTGTAACTCAAGCCAAGTTGAGTTATTATAGGTCACGCGATATCTCGTCGTCGCCAACTTAT
AACTCAAGCCGCCGGCCACCACCGCCACGCCACTTCCA-TACACCGCCGGAAACCGATGGAGCAGGG------CACCAAC
ACGGCGCCGGCGCCGCTACCGCAAGTCGCCAAGGAGACAGGCCATGGCATCGCCGTTATCGCCGCTGGAGGCTCCGCCTT
CTACTTCCTCAAGGGCCTGCGCAACTCCCCCAAAGGCGGCCGCCTAGCCGCCGCCGCCCAGGCGGTCCGCACAAACGCGT
CCCGAATCGGCGGCTGGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAACAAGAAGGAC
GACCGCTTCAACACCATGATCTCCTGTGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGTCCACGCGCCGCCGCCCT
CTCCGGGATCAAGGGCGCCGTCTTCGGTGGGCTCGCAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTAC
CGGAACCGGAGAAGTGATCAATGGTGCTGTGAGGGTTTTTCCGGCTGCTTTTCCGATCGAGCTTGCCCACTAAAC-TTTT
ATTACTGCTTGTACTCTGAAAGTCTGAATGTTACTAAAATTTAGGCGCTGTACGTAATTTTTGTTAATACGCATTACTAC
ATCTACATACATGGATCGTTTTTTTGTTTCTTGAGCCGTTGTTCCCGTTGT---------------------TC------
-----------AAGATGCGAGTGCGATCATAGTATAATCTAGAGCCC---------------------------------
----------------AACGAGGAG--ATGATGTAGGAGCTCGGCGGCATCATCTTCAGTCTCCACCGTACTCCTCAGCA
CCGAAGCCTTCTTTGAACTTGCATGGAATTATTACAATTGACTATGCGGATCACTGATATTCATCGGTCAATTCTTCCTC
CATGTTCCTAAAAAAGTTCACGTCCATATCAGTTATCGTTCTTGGCATAC--AGTTATACACGACCCACACCGGATGCAA
ATATTGGCCCAAAGCCATCGTTC-AGTTGTTTGGCGCATGGAAGAAGTGGCCGTACAAACCGTCAGGCCGGGCATCGATC
AGCATGTGCACACATCCATACATGCATGATCCACACACCCCACAATCGGCAAAAACTAGCACATCCATGTCGAGGGCATC
TGCCAAACACAGTTCCCTAATGGCTTTGAGAAGGTCTGCGGGCAACTTCAGCCGGTAGTCGTGCCAATGTTTCTACAATG
AGACT----ACATGTCACATCTGAACTTTGGTGTCATTACCCTGATCCTTGGTTGAGGCAACGGATATTCGACACTTTAG
ACCGATCACGGTGATTAAAGTGATCTAGCGGATTCTTTTGAAGGTGTGTGTGGCT---TGGTTTGCCCCGGTGGTGGAAC
ACCTTTCTCGCCCCTATGAGTCCACTTTTCTATAAGGTCGTCATGTTCATGGTGGGATCCATGGAAAAAAAATCA-TGGT
GGGATTCTGGCTCTTCGTGAGATTTGATCATGAGGTTACATAAAGGCGTATTCCTTAAG
>chr2A_458
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---------------------------------------------------------GAAAACCTGCTTTTCGTGTGAAA
GTGAACACTCAATAGCGACCAATTTCCCCAGTCTCGAGAGCTCAATGTGCCCGTCTGTAAATTATTAATCCATGATTTTT
TTA----------AATTTTTTAGAACAATAATATTATTCTAAATTCATATGTTTTTAG-TTCACTAT--TTTTTAATCTA
TAAAAATATGGTATTTCTTTTGTTCTTTAGAAGGGACTGGAAAACCGGTATTTGATGTGGAGGCTTTTTTTAGACCGATT
TTCCCCGTCGAAGCACTTAGAAGCGACTGATTTTCCCCGTCGAAGCCAGTAGTGAGAGCTAAATGGGCTGGCCCATCTAT
CACCGTCAAAGTGCACGTGAACTTTCTGGAGAAAACGAGCGGCCGCGCTCTGCCACGCACATGTATGCGTAGGATTTTTC
TGCTAGTGCATGTGATTGATCATTAAATGCAACCAGACTTATTATATTTGATGGACAACAAAACAGATTCACGTGTATTT
ATTCCGGATCTTTAATTTTAAAAAAGTCATATCTTTCAAACCACGTGTGGGAATTCAGATCCGTCTTCACCGTTGGGTTC
TTCGTGACGAGATCTTTGAAATTAGATCCTATATGGGTATGTTTTAATGAATTTTTTTTGATACCAATTTTGATGATATA
TTGTGCAGCTTTAGTACTGTATTGTGCAACTTTAGCACTACATCGTGCAACTTTTCCAAAACTAATGTTTGAAGTCGCAC
ATTCGTATGAGGTTGCAACCTAGTCTGATCTAGCCTGTCGATGGTTCTTCGTCTTTGATGGTGGCTGTATCGTTTCTCTT
ATCCGGTCTGCGTGCCGTGTCTGGCAGGTTGCCATGTACCCCTCATACTTTCGTGCCCCTGGTCCCTAGTTCTGTTACCA
TGAATTATTGGTGGCTTCGCTTCATGTTGGTGTTTGGGCTTGTGACTCTGCCTTATGGCTTTGTTTATAAAGTCGGGCTA
TGACCTTTTCTCTAAAAAAAAATGAGGTTGCAACCTAGTAACCACGATAACTTTGATGTGCAACTAATCTATTGTCCCGA
CGAAAGTCGATGTGCAACTTCCTCTTGTAATGTAGTCTAGTTATACACACATTGATATTTAGTTGGCTTGTAATATAGTC
TAGTTATACACACATTGATATTTAGTTGACTTGTAATATAGTCTAGTTGCACACACATTGATGTTTAGTTGGCAGGAAGA
CTAGTTACACACACATATGTTCAGTTGGCTTGTAATTTAGTCTAGTTACACACACATTAATGTTTAGTTGGCAGGACACT
AGTTGCACACATATGCTCAGTTGGCGCGACAATGTAGTCTAGTTGCACACACACACACTGATGTTTAGTTGACAGGACTA
TTGGCATGCACATGTGCCTAGTTGGCACGGCAATGTAGTCTAGTTGCACACACATTGATGTTTAGTTGGCAGGAAGACTA
GTTTATCGAAACATCCCCATGCGGGATTTATTTTGAAGAGCACGTCGCGAGGGTTTTAACGATGAAAACAATCTGAATTT
CGACGCGCGGTTTAGAAGATATGTTTTTTATAATTTTAAAAACCAAAAACTAATGTACAAAGGATGAGGATGAGGAATAT
TAATGCAGCGACACGTAGACATCCATCACCTAAAAAGAAATCACATAAAGTGATTAGTAGTGTCATGTCTTTCATGGAAT
CAAGGGACAAACGCTTATTTATTTGGCCGGCCGCTAGGGAGGGCCAGCGAGCCCCCGGCCGCCAGCTACGTGAGAGGCGA
GGTGTCCAACACCAGGACTACGCTTATTTATTTGACAGGGGTGTCTGTGTCTTGGAGCACACGTGAGAGGCGAGGAGTCC
AACACCAGGACTGCCAACTTGTAACTCAAGCCAACCGAGTTATAATAC--TCCCGAGATATCCCGTCGTCGCCAAGTTGT
CACTCAAGCCGCAGGCCACCACCGCGACGCCACTTCCACTACACCGGCGGAAACCGATGGAGCAGGGCACGAGCACGACG
ACGGCGCCGACGCCGCTACCGGAACTCGCCAAGGAGACAGGCAATTGCATCGCCGTTGTCGCCGCTGGAGGCTCCGCCTT
CTACTTCCTCAAGGGCCTGCGCAACTCCCCCAAAGGCGGCCGCCTGGCCGGCGCCGCCCAGGCGGTCCGCACAAACGCGC
CCCGGATCGGTGGGTGGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAAC---AAGGAC
GACCGCTTCAACACCATGATCTCATGTGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGGCCACGCGCCGCCGCCCT
CGCCGGGATCAAGGGCGCCATCTTCGGTGGGCTCGCAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTAC
CGGAACCGGAGAAGTGATCGTTGGTGCCGTGAGGGTTTCTCGGTCTGCTTTTCCGGTCGAGCTTGCCTATTGAACTTTTT
GTTACGGCTTGTACTCTGAAAGTCTGAATATCACTAAAATTTAGGGGCTGTATGTAATTTTTGTTAGTACGCATTA----
--CTATATACATGGATCGTTC-TTTGTTTCTTGAGCCGTTGTTCCCGTTGT---------------------TCTACTCT
TGACTGTTGTCAAGATGCGAGTGCGATCATCGTGAAATCTAGA-------------------------------------
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>chr2A_922
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--------------------------------------------------------GATCTCCCGTCGTCGCCAACTTGT
AACTCAAGCCGCAGGCCACCACCGCCACGCCACTTCCAC-ACACCGCCGGAAACCGATGGAGCAGGGC------ACGACG
ACGGCGCCGACGCCGCTACCGGAAGTCGCCAAGGGGACAGGCCAGTGCTTCACCTTTGTTGCCACCGGAGGCTCCGCCTT
CTACTTCCTCAAGGGCCTGCGCAACTCCCCCAAAGGCCGCCGCCTAGCCGGCGGCGCCCAGGCGGTCCTCACGAACGCGC
CCCGAATCGGCCGTTGGGGGGTCTGGCTCGGCGTCGAGGCAGCAATTGATAACGTCCTGGAGCGCGTGAACAAGAAGGAC
CACCGCTTCAACGCCATGATCTCCTTTGGCGCCGCCAGCGCCCTCGTCTCCATGGCCAGGGGGCCACGCGCCGCCGCCCT
CTCCGGGATCAAGGGCGCGGTCTTCGGCGGGCTCGCTGAGATCGTTATGCGCAGGCTTAAAAGCTTGGTGGCCGACCTAC
CGGAACGGGAGAAGTGATCACTGATGCCCTGAGGGTTTTTTGGGCCGCTTTTCCGATCGAGCTTGCCTATTAAAC-TTTT
ATTACTGCTTGTACTTTGAAAGTCTGAATATTACTAAAATTGAGGTGCTGTACGTAATTTTTGTTAGTACGCATCA----
--C---ATACATGGATCGTTC-TTTGTTTCTTGAGCCGTTGTTCCCGTTGT---------------------TATACTCT
TGACTGTCGTCAAGATGCGAGTGCGATCATCGTGAAATCTAGATCCCTGTCCAAAGACACGACATGTTAGCTGCACAGAG
CTCTACCGAAACGCGCAACGAGGAGCAATGACGTAGGAGCTCGGCGCCATCCTCTCCACCCTGCTCCTT----CTCAGCA
CCGAAGCCTTCATTGAACTTCCATGGAATTAGCATTGACTTC--------------------------------------
-------------------------------------------------------TATACACGACCCACACCAGATGCAA
ATATTTGCCCAAAGCCATCGTTTTAGTTGTTTGGCGCACGGAAGAAGTGGCCGTAAT---------GCCAGGCATC----
AGCATGTGCACACA--------TGCATGATCCACACACCGCACAATCAGCAAAAACTAGCACCTCGATGTCGAGGGCATC
TGCCAAACGCAGTTCCCTAATGGCTTTGAGAAGGTCTGCCGGCAACTTCAGCCGGTAGTCGTGCCAATGTTTCTACAATG
AGACTCTTAACATGTCACATCTGAACTTTGGTGTCATTACCCTGATCCTTGGTTGAGGCAACGGATATTCGACACTTTAG
ACCGATCACGGTGATTAATGTGATCCAGCGGATACTTTCTAAGGTGTGTGTGGCGTCGTGGTTTGCCCCGGTGGTGGAAC
GCGTTTCTCGCCCCTATCAATTCACTTTTCTAAAAGGTCGTCATATTCATGGTGGGAT----------------------
-----------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------SS---------------------------
S--------------------------------------------------S---------------S------------
---SS-SSSSSSS--S--------S--------S----------------------------------------------
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-----------------S----------------S--------------S------------------------------
SS-SSS-S-SS---------------------------------------------------------------------
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---S------SSSS-------S-S------------S--S----------------------------------------
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-----------------------------S--------------------------------------------------
-------------------------------------S------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------S---S---------------------------------S---------
-S------------------------------------------------------------------------------
-------------------------S----------------------------------------------------S-
-----------------------------------S--------------------------------------------
------------------------------------------------S-------------------------------
----------------------------------------S---S-----------------------------------
------------------------------------S--------------SSSSSSSSSSSSSSSSSSSSS--------
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S---------------------------------S---------------------------------------------
--------------------------S-------S--------------SSS------------S---------------
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--------------S---S------------S------------------------------------------------
-------------------------------------------------------S--------------------S---
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-------------------------------------------------------------S----------SSSS----
----------------S---------S---S----------S-----------S-----
>forward_415
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---------------------------------------------------------------------------GAGGA
GCAGAACTGGCTGTT-----------------------------------------------------------------
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>reverse_3111
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----------------------------------------------------------------------AGTCAAGATG
CGAGTGCGAT----------------------------------------------------------------------
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