>input_sequence_80478
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---------------------------------------------------------------------ATGGAGGTACT
TGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCCCCAGTC
ACAAGTGTGACAAGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGTAAACTGACTGGAATGACACATATT
TGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTTCCCGCT
CTCGCCACTGGAGCTGCAGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCTGACAGC---CATGAAGGGTGCTCCTTCA
AGCGCAGGCGTGGTGCACAGCTGCATCCTTCCCCTTTTGAGAGGTCCTACTCCGCCGTGTCTCCGATACCGAGCCAAGCT
GGAGATGGCATGGACCTGAGCTAG--------------------------------------------------------
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>chr1B_1_TraesCS1B01G200900
CCTCTTCGTCCGGGCCGTTGCAATTGACTCCGCGAGAGGTTCCTGTTCCCTGGCGGAGAGAGAGAG--------------
----GCAGGGAGGGAGAGGAAGGAGAGACCGAAGGCCGCGGTGTTTTTACCCCGTCTCTTCCTCCGCCTTCGAGCTTTAC
TGGTATGTATCCTCGCCTTTGCCCTCTATTACGTTG-TTCCTCCGAGGTTTTCGCTTCAGATTTTAGGGGCGTTTCGACG
AGGAGAAAGGGGAGACCGTGAGAGGTTGCTAGGAGGCGTTTGAATGCGATTTTGTCGGTCCAAATCCCTAATTGGCGTAG
ATTTTGGCGCTGTGGTGCGGTTGTTCGTGGTTTTGGTGCGAATTTATCGTGGGTGGTGCGGTAGGTGGGGGTTTCACCGT
TTAGATCTGGTAAAAATTTGTGAACCGGGAACGGGGCAGCTAGGTGTTTGGTTTACCAGCAGG-TTAAAAGGGGTAGGTG
CTGACTTGTGAATTAGGTTTTGTTTGTATCTGAGAATTTTATATTG-TTTTTTAAT-----CCTTTTGGATTCGTTTGTA
GTTTGGTGCCAGGTGGACTGTACTATCCAAATTATTCAATTA--GGTTGTGGTGTTGTGGGATTTTACTGGCTTTGGTCT
GCCAAAGCGCCAACGGATTTATAGTGAATCTTGTCAGTAATGTTAGAATTCAGAAATCATAAGTAACCGAGATTTATCTG
TAGAAAATTGTGGTCAAAGTATTGCAAATCTGTGATAAATCTTGCATGTAAATTTAGTGGCAATTTCGTGAGGTTGCGCC
ACTTTTAATACTAGTTTTTTCTTGTGTTCGATGCAAAAGTACTCTCAGATTTACTGCAATTTATTCTAGGAA-TGGTTCG
GTAATAGCAGCAAGAACTGTCACCGCGTGGGTCATATGCAAGTGCTTCAAAACAAAATTCTGAAGCAAATTCTTGTTCTG
GGTTGCAGAAACTCCGATCTCAGAAACCAAGAAAAGGGGATCTGTGAAGAGGTTTCTCGCGGCAGAACAATGGAGGTACT
TGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCCCCAGTC
ACAAGTGTGACAAGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGTAAACTGACTGGAATGACACATATT
TGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTTCCCGCT
CTCGCCACTGGAGCTGCAGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCTGACAGC---CATGAAGGGTGCTCCTTCA
AGCGCAGGCGTGGTGCACAGCTGCATCCTTCCCCTTTTGAGAGGTCCTACTCCGCCGTGTCTCCGATACCGAGCCAAGCT
GGAGATGGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTGCCCCGGCTACCTTATGCGGATGTCTACTC
CATTTCCCCTTCTTTGACACGATGGAAACTATAAGAGCTTCCTTCTTTATAGACTTATGAAGGGATATGAGACTCCTTAG
AGGCACTAAATAATGTCTATGTAGTATCAATTCAGTTTCATGGGACCTTGTTGTAATCGTAACTTCGATTGAACAGCCTA
TTCTGAATTACTTAGTGTTAATCATTTGCTATTACCGTTTAGATTATTTCTCTATAGTGCGGTGCTCTTGTTTCCTCCAA
CTTTTCATTATTGTAGCTCCTTTCTTTCTTATGCTCTCTTGAGGTTCATTATCTGCTGCATTTAAGTGCATTCAAGCTGT
GCAAATTTGCTTGACATAGTTGGTGATGTATATCCGTTGCAGA---CATTATCGTATTTCTTGGGGCGTGAACTTACTAA
CTAAATTTCCTTCATAATTAGTGCTTTGCATGGCAGGTTGCTGATCAGGTCTCAGCTATTTATGGTTTGCTCTCATATAG
CTTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAGGTTATGTTTCTAACATCTATATTGCTTCCTCCTGTTTTGTTTTT
GACTTGCTTCTTTCCTTGACCCCTTTCTGTTTTGCAGGGTGATCCAGGTGCTAACTTTTTTGAAAATATTTTGGTCTTTA
TGTAATGTTCCCTTTGTTAAGTTGATTTCGTTTGTTCTGAGTGTTCACTTGTCTTTTATGCTTGTGCAGGTGAATTGGTG
TTCGTTCTTTCGCTCTTCTTGGTCCATGGGAGGCAGGAGCTATGGAAGATCATTGAAATCCTTTGCAGCAGTGGAATAGC
AATGTACCATCAAAGTCTTCGGCTGCAGAATGCTTTTCAGGTAACCGTCCGAGCGCTTGTCAGTTTATTTTGAAGATAGA
CCGCAAAACTGTTTGCTGCTATACTTAC-ATTAGTCTTTTCCAGTGCATTGTGCACAACAGAAATCAT
>chr1D_1
CCTCTTCGTCCGGGCCGTTGCAATTGACTCCGCGAGAGGTTCCTGTTCCCTGGCGGAGAGAGAGAGAGAGAGAGAGAGAG
AGGGGCAGGGAGGGAGAGGAAGGAGAGACCGAAGGCCGCGGTGTTTTTACCTCGTCTCCTCCTCCGCCTTCGAGCTCTAC
TGGTATGTATCCTCGCCTCTGCCCTCTATTACGTTG-TTCTTCCGAGGCTTTCACCTCAAATTTTAGGGGTGTTTCGACG
AGGAGAGAGGGGAGACCGTGGGAGGTTGCCAGGAGGCGTTTGAATGCGATTTTCTCGATCCGAATCCCTAATTGGCCCAG
ATTTTGGCGCTGTGGTGCGGTTGTTCGTGGTTTTGGTGTGAATTTATCGTGGGTGGTGCGGTAGGTGGGGGTTTCACCGT
TTAGATCTGGTAAAA--TTGTGAGCCGGGAAAGGGGCAGCTAGGTGTTTGGTTTACCAGCAGGATTAAAAGGGGCAGGTG
CTGACTTGTGAATTAGGTTTTGTTTGTATCTGAGAATTTTATATTGTTTTTTTAAT-----CTTTTTGGATTCGTTTGTA
GTTTGATGCCAGGTGGACTGTACTATCCAAATTATTCAATTATGGGTTGTGGTGTTGTGGGATTTTACTGGCTTTGGTCT
GCCAAAGCGCCAACGGATTTATATTGAATCTTGGCAGTAATGTTAGAATTCAGAAATCATAAGTGACCGAGATTTATCTG
TAGAAAATTGTGGTCAAAGTATTGCAAATCTGTGATATGTCTTGCATGCAAATTTAGTGGCAGTTTCGTGAGGTTGTGCC
ACTTTTAATACTAGTTTTTTCTTGTGTTCGATGCAAAAGTCCTCTCAGATTTACTGCAATTTATTCTATGAACTGGTTCA
GTAATAGCAACAAGAACTGTCACCGCGTGGGTCATATGCAAGTGCTTCAAAACAAAATTCTGAAGCAAATTCTTGTTCTG
GGTTGCAGAAACTCCGATCTTAGAAACCAAGAAAAGGGGGTCTGTGAAGAGGTTTCTCGCGGCAGAACAATGGAGGTACT
TGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCCCCAGTC
ACAAGTGTGACAAGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGCAAACTGACTGGAATGACGCACATT
TGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTTCCCGCT
CTCACCACTGGAGCTGACGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCCGACAGCA---ATGAAGGGTGCTCCTTCA
AGCGCAGGCGTGGTGCACAGCTCCATCCTTCCCCTTTTGAGAGGTCCTACTCCGCCGTGTCTCCGATACCGAGCCAAGCT
GGAGATGGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTTCCCCGGCTACCTTATGCGGATGTCTACTC
CATTTCCCCTTCTTTGACAGGATGGAAACTATAAGAGCTTCCTTCTTTATAGACTTATGAAGGGATATGAGACTCCTTAG
AGGCACTAAATAATGTCTATGTAGTATCAATTCAGTTTCATGGGACCTTGTTGTAATCGTAACTTCGATTGAACAGCCTA
TTCTGAATTACTTAGTGTTAATCATTTGCTATTACCGTTTAGATTATTTCTCTATAGCGCGGTGCTCTTGTTTGCTCCAA
CTTTTCATTATTGTAGCTCCTTTCTTTCTTATGCTCTCTTGAGGTTCACTATCTGCTGCATTTCAGTGCATTCAAGCTGT
GCAAATTTGCTTGACATAGTTGGTGATGTAAATCCGTTGCAGATTACATTATCCTATTTCTCGGGGTGTGAACTTACTAA
CTAAATTCCCTTCATAATTAGTGCTTTGCATGGCAGGTTGCTGATCAGGTCTCAGCTATTTATGGTTTGCTCTCATATAG
CTTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAGGTTATGTTTCTAACATCTATATTGCTTCCTCCTGTTTTGTTTT-
GACTTGCTTCTTTCCTTGACTCCTTTCTGTTTTGCAGGGTGATCCAGGTGCTAACTTTTTTGAAAATATTTTGGTCTTTG
TGTAATGTTCCCTTTGTTAAGTTGATTTCATTTGTTCTGAGTGTTCACTTGTTTTGTATGCTTGTGCAGGTGAATTGGT-
---GTTCTTTCGCTCTTCTTGGTCCATGGGAGGCAGGAGCTATGGAAGATCATTGAGATCCTTTGCAGCAGTGGAATAGC
AAGGTACCATCAAATTCTTCGGCCGCAGAATGCTTTTCAGGTAACTGTCGGAGCGCTTGTCAGTTTATTTTGAAGAGAGA
CCGCAAAACTGTTTGCTCCTATCCTTACAATTAGTCTTTTCCAGTGCATTGTGCACAACAGAAATCAT
>chr1A_1
CCTCTTCGTCCGGGCCGTTGCAATTGACTCCGCGAGAGGTTGGTGTTCCCTGGCGGAGAGAGAGAG--------------
----GGAGGGAGGGAGAGGGAGGAGAGACCGAAGGCCGCGTTGTTTTTACCTCGTCTCCTCCTCCGCCTTCGAGCTCTAC
TGGTATGTATCCTCGCCTCTGCCCTCTATTACGTTCTTTTCTGCGAGGTTTTCGCCTCAGATTTTAGGGGTGTTTCGACG
AGGAGAGAGGGGAGACCGTGAGAGGTTGCTAGGAGGCGTTTGAATGCGATTTTGTCGGTCCGAATCCCTAATTGGTGTAG
GTTTTGGCGCTGTGGTGCGGTTGTTCGTGGTTTTGGTGCGAATTTATCGTGGGCGGTGCGGTAGGTGGGGGTTTCACCGT
TTAGATCTGGTAAA--TTTGTGAACCGGGGAAGGGACAGCTAGGTGTTTGGTTTACCTGCAGGATTAAAAGGGGTAGGTG
CTGACTTGTGAATTAGGTTTTGTTTGTATCTGAGAATTTTATATTGATTTTTTTTGTGGGACTTTGTGGGTTCGTTCGTA
GTTTGATGCCAGGTGGACTGTACTATCCAAATTATTCAATTATAGGTTGTGGTGTTGTGGGATTTTACTGGTTTTGATCT
GCCAAAGGGCCAACGGATTTATAGTGAATCTTGTCAGCAATGTTAGAATTCAGAAATCATAAGTGACCGAGATTTATCTG
TAGAAAATTGTGGTCGAAG---------------ATAAATCTTGCATGCAAATTTAGTGGCAATTTCGTGAGGTTGCGCC
ACTTTTAATACTAGTTTTTTCTTGCGTTCGATGCAAAAGTCCTCTCAGATTTACTGCAATTTATTCTATGAACTAGTTCA
GTAATAGCAACAAGAACTGTCACCGCATGGGTCATATGCAAGTGCTTCAAAACAAAATTCTGAAGCAAATTCTTGTTCTG
GGTTGCAGAAACTCCGATCTCAGAAACCAAGAAAAGGGGGTCTGTGAAGAGGTTTCTCACGGCAGAACAATGGAGGTACT
TGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCCCCAGTC
ACAAGTGTGACATGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGCAAATTGACTGGAATGACACACATT
TGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTTCGCGCT
CTCACCACTGGAGCTGCAGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCTGACAGCAGCCATGAAGGGTGCTCCTTCA
AGCGCAGGCGTGGTGCACAGCTGCATCCTTCCCCTTTTGAGAGATCCTACTCCGCCGTGTCTCCGATACCGAGCCAAGCT
GGAGATGGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTTCCCCGGCTACCTTATGCGGATGTCTACTC
CATTTCCCCTTCTTTGACAGGATGGAAACTATAAGAGATTCCTTCTTTATAGACTTATGAAGGGATATGAGACTCCTTAG
AGGCACTAAATAATGTCTATGTAGTATCAATTCAGTTTTATGGGACCTTGTTGTAATCGTAACTTCGATTGAACAGCCTA
TTCTGAATTACTTAGTATTAATCATTTGCTATTACCGTTTAGATTATTTCTCTATAGCGCGGCGCTCTTGTTTGCTCCAA
CTTTTCATTATTGTAGCTCCTTTCTTTCTTATGCTCTCTTGAGGTTCATTATCTGCTGCATTTCAGTGCATTCAAGCTGT
GCAAATTTGCTTGACATAGTTGGTGATGTAAATCCGTTGCAGATTACATTATCCTATTTCTTGGGGCGTGAACTTACTAA
CTAAATTTCCTTCATAATTAGTGCTTTGCATGGCAGGTTGCTGATCAGGTCTCAGCTATTTATGGTTTGCTCTCATATAG
CTTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAGGTTATGTTTCTAACATCTATATTGCTTCCTCCTGCTTTGTTTT-
GACTTGCTTCTTTCCTTGACTCCTTTCTGTTTTGCAGGGTGATCCAGGTGCTAACTTTTTTGAAAATATTTTGGTCTTTA
TGTGATGTTCCCTTTGTTAAGTTGATTTCATTTGTTCATAGTGTTCACTTGTTTTGTATGCTTGTGCAGGTGAATTGGT-
---GTTCTTTCGCACTTCTTGGTCCATGGGAGGCAGGAGCTATGGAAGATCATTGAGATCCTTTGCAGCAGTAGAATAGC
GAGGTACCATCAAAGTCTTCGGCCGCAGAATGCTTTTCAGGTAACTGTCGGAGCGCTTGTCAGTTTATTTTGAAGAGATA
CCGCAAAACTGTTTGCTGCTATCCTTATAATTAGTCTTTTCCAGTGCATTGTG---AACAGAAATCAT
>SNPs
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---------------------------------------------------S------S-----------------S---
------------------S------------------------------------S--------------S---------
------S------------------------------------------------------S------------------
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---------------S---------------S------------------------------------------------
--------------------------------------------------------------S-----------------
-----S--------------------------------------------------------------------------
----------------------------------------------------------------S---------------
------------------------------------------------S-------------------------------
----------------------------------------S---------------------------S----------S
---------S----------------------------------------------------------------------
---------------------------------------S----------------------------------------
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-------------------------------------------------------S--------------------S---
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---S----------------------------------------------------------------------------
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--------------------------------------------------S-----------------------------
-------------------S------------------------------------------------------------
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---------------------------------------------------------S---------------S------
---------------------------------------------------------------S----------------
------------------------------S----------------------S--------------------------
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-------------------------------------------------------------------------------S
--------------------S-----------------------------------------------------------
-----------------------------S----------------------S--S-----------------------S
SSS-----------------------------------------------------S-----------------------
--S--------------------S---------------------S---S--------------------------S---
----------------------S---------------------------------------------
>forward_247
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--------------------------------------------------------------------GGCGTTTCGACG
AGGAGAA-------------------------------------------------------------------------
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>reverse_1738
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---------------------------------------------------------TGCGGTGCTCTTGTTTCCTC---
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