>input_sequence_80477
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATGGGTCGCGTCCGCACCAAGACCGTGA
AGAAGACCTCCCGCCAGGTCATCGAGAAGTACTATTCTCGGATGACCCTCGACTTCCACACCAACAAGAAGGTGCTCGAG
GAGGTCTCCATCCTCCAGTCGAAGCGCCTCCGCAACAAGGTGGCCGGCTTCACCACCCATCTGATGCGCCGCATCCAGCG
CGGCCCCGTGCGCGGCATCTCCCTCAAGCTGCAGGAGGAGGAGCGTGAGCGCCGCATGGACTTCGTGCCGGAGAAGTCGG
CGCTCGAGGTCGACGAGATCCGCGTCGACAAGGAGACCATGGACATGCTGGCGTTCCTCGGCATGGCCGACCTCCCCGGC
GTCGAGCGCGCCCCCGAAGTCACCTCCTCCGCCGCCCCCTACCGCCAGCCGTTCAACGGGCCCCGTGGTGGCAACCGCGC
CTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr1B_1_TraesCS1B01G174800
TATTATATCTAAGATATTTCAAAGCAAATTACATGAAAAAATTGCATATGAGCCCATAGTTTTTATTATATTTCTGAAAT
ACGTACATATTTGTACGTAAAAAAGAGCAGAGTCAAAAGATGGTATATACTACCTAAAAATTAGTATATATACTACCTAA
TCATTATTATATATTACATACTACACGTACATACTACATACAACATACAAAACACAAGTGATGGTAATTACCACTGCTTG
TAGAAAACATTTATCTTATATATATATTTAAACAAGCAAAAAAGTAAAACCAAAAAACCCGAGGAAAACTCGGTTCCAAA
CAAACCGAAAGAAATTAACCCCCAAAATTTGGTGGGATCCTAGAAGATTCCCAAACTGCCCAAGGCGAGATGCCAGTATG
GGCTGACACACTTGTAGGCGCCCTGTACAAAGTAAACAATGCTACATGCACCGAATAGGAAATGTATTTGCAGCCCTTAG
GTAGGGGGAAATAAGAAATTTTGTTGGTAAGACAAGGCCTGATACGATTTCAGCTCGAGAAACGAATTGATCTTGAGCCA
ACACTGGCTCACTCAATTATAACCTGATATAATATAATTATATTAAATAATTATGATATGTATTGTACGAAAATAGAATT
TTTAGTATAAGTTTGCTGAGCCTCAGCCCTAGGGAAAGGGAAATAAGTAGTGTTGATTAGATTCCAGTCCAGTTCTAT--
---TCTAATGGGCCTAAATCAACCTAAATGAGTACAGAAGGGAGCTTCCGAACAATGCGAAGCCCAACTAAGGCAATCTC
GATCTCGTGCGCCCATCGCAATACGAACGGCTGGCATCCGTCCTCCACGCCGAAACCCTAGCTACCCACGCGGCCGGGTA
CCATTATAAGAAGTTCCTCGCCTCCCGTCGCCCCCAAACC------CTCCAGCCCTGCCGCCGCCGCCCCCTGCACCAAC
CAGCGCCCT-GCCGCCGCCGCCGCCGGAGAAGGAGAGGGAGCAGCCGCAGCCATGGGTCGCGTCCGCACCAAGACCGTGA
AGAAGACCTCCCGCCAGGTCATCGAGAAGTACTATTCTCGGATGACCCTCGACTTCCACACCAACAAGAAGGTGCTCGAG
GAGGTCTCCATCCTCCAGTCGAAGCGCCTCCGCAACAAGGTGGCCGGCTTCACCACCCATCTGATGCGCCGCATCCAGCG
CGGCCCCGTGCGCGGCATCTCCCTCAAGCTGCAGGAGGAGGAGCGTGAGCGCCGCATGGACTTCGTGCCGGAGAAGTCGG
CGCTCGAGGTCGACGAGATCCGCGTCGACAAGGAGACCATGGACATGCTGGCGTTCCTCGGCATGGCCGACCTCCCCGGC
GTCGAGCGCGCCCCCGAAGTCACCTCCTCCGCCGCCCCCTACCGCCAGCCGTTCAACGGGCCCCGTGGTGGCAACCGCGC
CTAGGTTCCTCCGCATCGT---CGTCGTACCCCTATATTATGCTTTATGTCAT---TTAGATCTGTTACTTGTGGCAAGT
AATGTTTTGAACTCAGAGCTTAAGTTCGAGGTGTTTTGATCTGCGTATGGTGGACATGATCTGTTTATCTCACCGTTTAT
CTGAAGTGATTCGATATATTACTGTTTTTCTTTGAAGTTTATGCTCGTTACTAGATGATTGATTGATTTATGATCTATCT
ACATATTGTTAATTATATATATGTATATCCACTGTCATGTTCGTCCAACTCTTTGCAAGGAATTGGTCTATGTAAGCAGA
TGTT-CTGT-----CATAGCAGTTACGTTCGGTAGTGGTACATG-CTTCTAGGTTTGTGATAGGTTTAGAGTGGGTGCCT
TCTAGGTTTGTGATAAGGTTTAGTGCGTTGTACAATTGTTCCTATTTCTGGTTAGTGCTGCTATATAAAACCGTCGATCA
TTGCTTTTCTTATAAAACACATATTTTGGTGTTTAAATTGTGTCTTTGCTCTGCATTGATGCTATAACATGTTTGCTTGG
ATTGATCTAATTATGCGTTTACATCATTGAACTAAGATTTAACTAATTATGCGTTTACAGGATTTTACTAATTGCTTTTC
TTATAAAACACATATTTCAGTTTAGGTAGGTTTACAGGATTGAACTAATTATGCGTTTCTTTAACTGGCTTTCGGAAACC
AGAACCAGTCCTGCACCCCTGCAGTGCAAATAGTAGATCATAGGTAAGGCTGGGCGTTTGTAGGTCTTGTTCTGCTGTTT
ATTTGGTTGTGTTAACATGCAACTCTTGTTTTCTTGTTCAACTCCTTGGCAAAATCTCCATTGAATGACAATGTTTGGCT
TTTGTTACATTGCGCTCTTGCTTGTTTCTCCTCCCTGATTTGAGGGGTTGCGCTTTGATTCTGTGTTTGTCTCAATAGTT
ACGGTATACACTTTGTTGGTTGGCTGCACGGTTTGCCTGCTCCTTCTGCGGTGTTGA
>chr1D_700
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GATTCCAGTCCAGTTCTATTG
----CTAATGGGCCTAAATCAACCTAAATGAGTACAGAAGAGAGCTTCCGAACAATGCGAAGCCCAACTAAGGCAATCAC
GATCTTGTGCGCCCATCGCAACACGAACGGCTGGCATCCGTCCTCCACGCCGAAACCCTAGCTACCCACGCGGCCGGTAC
CCATTATAAGAAGTTCCTCCCCTCCCGACGCCCCCAAACCCTACCCCTCCAGCCCTCGCGCCGCCGCAC----CACCAAC
CAGCGCCGTCGCCGCCGCCGCCGCCGGAGAAGGAGAGGGAGCAGCCGCAGCCATGGGTCGCGTCCGCACCAAGACCGTGA
AGAAGACCTCCCGCCAGGTCATCGAGAAGTACTACTCTCGGATGACCCTCGACTTCCACACCAACAAGAAGGTGCTAGAG
GAGGTCTCCATCCTCCAGTCGAAGCGCCTCCGCAACAAGGTGGCCGGCTTCACCACCCATCTGATGCGCCGCATCCAGCG
CGGCCCCGTGCGCGGCATCTCCCTCAAGCTGCAGGAGGAGGAGCGTGAGCGCCGCATGGACTTCGTGCCGGAGAAGTCGG
CGCTCGAGGTCGACGAGATCCGCGTCGACAAGGAGACCATGGACATGCTGGCGTTCCTCGGCATGGCTGACCTCCCCGGC
GTCGAGCGCGCCCCCGAAACCACCTCTGCCGCCGCCCCCTACCGCCAGCCCTTCAACGGACCCCGCGGTGGCAACCGCGC
CTAGGTTCCTCCGCATCGT---CATCGTACCCCTATATTATGCTTTATGTCTT---TTAGATCTGTTACTTGTGGCAAGT
AATGTTTTGAACTCAAGGCTTAAGTTCGAGGTGTTTTGATCTGCGTATGGTGGACATGATCTGTTTATCTCACCGTTTAT
CTGAAGTGATTCGATATATTACTGTTGATCTTTGAAGTTTATGCTCGTTGCTCGATGATCGATTGATTTATGAGCTATCT
ACCTATTGTTAATTATATATATGTAAT--CACTGTCATGTTCGTCCAACACTTTCCAACGAATTGGTCTATGCAGGCCGA
TGATGCTGTCATAACATAGCAATAACGTTCAGTAGTGGTACATGTCTTCTAGGTTTGTGATAGGTTTAG-----------
-----------------------TGCGTTGTACAATTGTTCCTATTGCTGTTTAGTGCTGCTATATAAAACCGTTGATTA
TTGCTTTTCTGAT-AAACACATATTTTGGTGTTTAAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>chr1A_700
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GATTCCAGTCCAGTTCTATTC
TAATCTAATGGGCCTAAATCAACCTAAATGAGTACAGAAGAGAGCTTCCGAACAATGCGAAGCCCAACAAAGGCAATCAC
GATCTTGTGCGCCCATCGCAACACGAACGGCTGGCATCCGTCCTCCACGCCGAAACCCTAGCTACCCACGCGGCCGGTAC
CCATTATAAGAAGTTCCTCCCCTCCCGTCGCCCCCAAACCCTACTCCTCCTGCCCTCGCGCCGCCGCACCCCGCACCAAC
CAGCGCCCA-------GCCGCCGCCGGAGAAGGAGACGGAGCAGCCGCAGCCATGGGTCGCGTCCGCACCAAGACCGTGA
AGAAGACCTCCCGCCAGGTCATCGAGAAGTACTACTCTCGGATGACCCTCGACTTCCACACCAACAAGAAGGTGCTCGAG
GAGGTCTCCATCCTCCAGTCGAAGCGCCTCCGCAACAAGGTGGCCGGCTTCACCACCCATCTGATGCGCCGCATCCAGCG
CGGCCCCGTGCGCGGCATCTCCCTCAAGCTGCAGGAGGAGGAGCGTGAGCGCCGCATGGACTTCGTGCCGGAGAAGTCGG
CGCTCGAGGTCGACGAGATCCGCGTCGACAAGGAGACCATGGACATGCTGGCGTTCCTCGGCATGGCCGACCTCCCCGGC
GTTGAGCGCGCCCCCGAGGCCACCTCTGCCGCTGCGCCCTACCGCCAGCCCTTCAACGGACCCCGCGGTGGCAATCGCGC
CTAGGTTCCTCCGCATCGTCGTCGTCGTACCCCTATCATCTTTACATGTTTTATTATTAGATCTGTTACTTGTGGCAAGT
GATGTTTTGAACTCAGAGCTTAAGTTCGAGGTATTTTGATCTGCGTATGGTGAACATGATCTGTTTATCTCATCGTTTAT
CTGAAGTGATTCGATATATTACTGCTGAGCTTTGAAGTTTATGCTCGTTACTCGATGATTGATTGATTTATGAGCTATCT
ATCTATTGTTAAT--TATATATGTATT--TACTGTCATGATCTTCCAACACTTGCAA-----------TATGTAGGCCGA
TGTT-CTGTCCTAACATACCAATAACGTTCAGTAGTGGTACATGCCTTCTAGGTTTGTGATGGGTTTAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
----------------------------------------S-------------------------------------S-
-----S---------------S-------------------------------------------------------SSS
-------------------S------------------------------------SS---------S---S--------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------SS----------------------S--------S-----S--------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------SS------------------------S--------------------S------
--S-----------------------SSS--------------------S----S---S---------------S--S--
---------------------S-S------S--------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------------------S---S-----------------------S---S-
----------S--S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_433
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GTAGGCGCCCTGTACAAAGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
>reverse_2201
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TAGGTAAGGCTGGGCGTTTG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------
