>input_sequence_80467
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-----------------------------------------------------------ATGGCACAGCAGGAGAAGAAG
GCGCCGGAGCTGCAGC------------------------------AGGACCCGGAGATCCAGGACTCGGAGAACCGGAC
ACAGCAGGTGAAGAAGGCGCCGGAGCTGCAGGACCCGGAGATCCGGGCAGAGCTGGACCGCCGCGCCCGCGAGGAGGGCG
AGACCGTCATCAAGAGCGGCGCCGGCGGCAAGACCCTCGAGGCGCAGGAGCGCCTGGCGGAAGGTACGTGCGTGCGTTCA
TGCGTTGGCGTATGTGG---------------------------------------TGTTGCTCTAACTTTGTGTTGATC
TGCTTGTGCTGCTGTGCATGCGTGCTGCAGGGCGTAAGAAGGGCGGGCTGAGCCGTGCGACCGGCTCCGGCAACGAGCGC
GCAGAGGGCGAGGGCGGGGTGGTGATCGAGCCGGACGAGAAGAAGCTCAAGGAGGTCAAGAAGGATCTCGGGCGCGAATG
A-------------------------------------------------------------------------------
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-----------------------------------
>chr3A_1_TraesCS3A01G133200
TTCTGCACCATTAGTTATGTTCTTTGGCTTCATATTTCAATCCTATGAGTTTCTGTTGAGCAGACTTGCATCTGTATGCT
ACAAAAATTATAGACCTTAAATGTTTCGTCCCGGGTAAGTTCAATTCCTGGATCCGACATAAAGACAACCATCGACCGAA
TCCCACAAGGTCCATCGAAGACACACCTTCGCACACCCTCTCACAATGATAGACACACTATCGAGACACAGACAAGGTGA
GACAACGTTATTCTATCTTCAGCAAGCCGTCGCCTTCTCATCGTCATGAACACGACACAAATCCTAGCAAATCTCAAA-A
AAAATATAAAAACGGAGTCCTCTAGTGGATAAGGGCCGAAACTCACCACATCTCACAGCCCTAAGGCCGCAGAAGACGAG
ACAGGTCGGTGGCAT-----------GGAGGCAGGAA-CCTAATCGTGTGTTCACTTGGGGAGGAGAGACGAAGGGGTAA
GTCGTTTTTTCCCCTGCGTCACGTCTATACAGCTGTGAACAGTTTGTTTATGGAGTAGCTCCAGCAAAAACACAAACTGT
CATCCTGGCGCCCGTCATGCTTCACGACCAACCAAAGTACCCAACGTGCTGAAGCCGATGATGCAAAACCAAATGATCAT
CTACCGACCGCCTCGTGCACACGGACCAGTAGCGTGCAATGTTGCCGGCTTC-CAGAAGGGAGCCTCCACGTAAGTTCCC
GGCACACGAACTTACGGCAACGTTTGACCACGGTAGCCGCTACGTGCTCGCAGTGAAATCACTTCCCATCAAAACGTGGC
GCGCGCCCCATGCATGTTCGCCACGCCGGCCCGCGGTGAAAGGCCGAGGTAACAGCGCACCACGGCCGGCAGCATGCACC
GTCCACGTATACACGGACCGCACCGCCGTGCACCACCTATATAAGCGGCC-----TCCGCTCAGTGGTGAAGCAGAGCAT
ACCAGCAGGCTAGCGGAGACAGACTTCAAAGACTTGTTACCGAGCAGAGACCGCGAGCAATGGCACAGCAGGAGAAGAAG
GCGCCGGAGCTGCAGC------------------------------AGGACCCGGAGATCCAGGACTCGGAGAACCGGAC
ACAGCAGGTGAAGAAGGCGCCGGAGCTGCAGGACCCGGAGATCCGGGCAGAGCTGGACCGCCGCGCCCGCGAGGAGGGCG
AGACCGTCATCAAGAGCGGCGCCGGCGGCAAGACCCTCGAGGCGCAGGAGCGCCTGGCGGAAGGTACGTGCGTGCGTTCA
TGCGTTGGCGTATGTGG---------------------------------------TGTTGCTCTAACTTTGTGTTGATC
TGCTTGTGCTGCTGTGCATGCGTGCTGCAGGGCGTAAGAAGGGCGGGCTGAGCCGTGCGACCGGCTCCGGCAACGAGCGC
GCAGAGGGCGAGGGCGGGGTGGTGATCGAGCCGGACGAGAAGAAGCTCAAGGAGGTCAAGAAGGATCTCGGGCGCGAATG
ATCGAGCGAGGTAGACGATGTACGGCCTCACAGGCCGGCCCTCCTATATATATATATATATCGTACGTGTGGATGTACTG
TA----AGTTAGTACGTAGTGCTATGGGTGTACGTGGTAGTAGGCTAGGTTGAAGGATGCAGCTTACGTAGTAGCGTTGA
TGCATGCATGTCTTCGTGCTCGCACGGACATGGC----GTACGTACGGCTGGCTACAAAATTTTGGTCCCTGGATTGTAG
CC-----------------------------------------------------------GCCGTAGCCCCTCTATATA
TGTAGCTCGATCGTAATCC-ATGTACCCTGGCTGCAAAATTTTGGCATGTATGTACGTTCTGTAGCCAATGATCCCCGGA
TATATG------AGTTGATAAATAAATAGTGGCCGTGTCTGCGAAAACTCCACACTAACTTCTATTCAATAAACGATGTA
TAGTAGTATTTTTTTAATCACAGATTCATTCCTATGTACGCACGCTCATTCCTATGTACTCGTTATGTAGTCGAGAGAGT
ACCAATTACTTACAATTGTTCATGAAATTACTTTACTACCGTTCCAAGTACAATATGGCCAGTCTAAAGAAGACACATTC
AAAGAAAAAGAATTAACACACTACAACACGTCCTTGAAAGCGTTACCAAAGCCCAAGAATGGCCCACCCCGTCGAGAAAG
CGCTGCCTAAGATGAAGCCGGCCATGAAGGGAGTATATTATGAAGGCACTTCTCGATGATGAAACTCAACGAAGATGAAA
TAATCCGTCACGTTTCTAAACAAGGTTTTGCAGCTTGCTGACCAGAAATGAACTTATGCTACGAGCCTTAGGTTCAGATT
GGCGTCGGCGGTTTGGTGGGAAGTTTCAGATTTTTTTAGGGTACCTTCCATTTTAAGATCGTGTTTGTGGGCGATTTGTT
CTATACCAGGCTCATTTAGATGGGCTTCAGGCCAGCGATGGCATCTTCATTCACAGTCCAATCCACGTAGTACTAGTTCA
TTAGTGGGCTAGGTGACAGCCGAGGACGATCTGGT
>chr3D_140
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-----------------------------------------------------------TAAAGGCAACCACCGACCGAA
TCCTGTGAGATCCTTCGGAGGCACACCTCCACACGTCCTCCGACGACGGTAGACACTCCACCGGGACAAGGGCTAGACGG
GAGAACCTTATTCCATCTTTAGGAAGCCGTCGCCGTCTCGTCATCATAAGCATGACACAAACCCTAGCAAATCTTAAAGA
AACATTTGAAAACGAAGTCCTCCCATCGGCAAGGGCCAAAATTCATCACGCCTCATGGCTCTAAGGCC-----AGACGAG
GCAAATCGATGGCACCACCGGTGGTAGGAGGCAGGAACCCTAATCGTGTGTTCACTTGA-GAGGAGAGACGAAGGGGTAA
GTAGTTTTTTTCCCTGCGTCACCTCTATGCAGTTGTGAACAGTTTGTTTATGGAGTAGCTCCAGCAAAAA-ACAAACTGT
CATCCTTGCGCCCGTCATGCTTCACGACCAACGAAAGTACCCAACGTGCTGAAGCCGATGATGCAAAACCAAATGATC--
-TACCGACTGCCTCA-GCACACGAAACAGTAGCGTGCAATGT-GCTGGCTAC-CAGAAGG--GCCTCCACGTGAGTCCCC
GGCGCATGAACTTACGGCGACGTTTGACCACGGTCACCGCTACGTGCTCGCCGAGAAATCACTTCCCATCAA-ACGTGGC
GCGCGCCCCATGCATGTTTGCCACGCCGGCCCGGGGTGAAAGGCAGCGGTAACAGCGCACCACGGCCGGCAGCATGCACC
GTCCACGTAT--ACGGACCGCACCGCCGTTCACGACCTATATAAGTGGCCGGAACTCCGCTCTCCGGTGAAGCAGAGCAT
AGCAGCAGGCTAGCGGAGGCAGACTTCGAAGACTTGTTACGAGC---AGACCGCGAGCAATGGCACAGCAGGTGAAGAAG
GCGCCGGAGC------------------------------------------CGGAGGTGCAGGACTCGGAGATCCAGAC
ACAGCAGGTGAAGAAGGCGCCGGAGCTGCAGGACCCGGAGATCCGGGCAGAGCTGGACCGCCGCGCCCGCGAGGAGGGCG
AGACCGTCATCAAGAGCGGCGCCGGCGGCAAGACCCTCGAGGCGCAGGAGCGCCTCGCAGAAGGTACGTGCGTGCGTTCA
TGCGTTGGCGTATCTGG---------------------------------------TGTTGCTCTAACTTTGTGTTGATC
TGCTTGTGCTGCTGTGCATGCGTGCTGCAGGGCGTAAGAAGGGCGGGCTGAGCCGTGCGACCGGCTCCGGCAACGAGCGC
GCCGAGGGTGAGGGCGGGGTGGTGATCGAGCCGGACGAGAAGAAGCTCGAGGAGGTCAAGAAGGATCTCGGGCGCGAATG
ATCGAGCGTGGTAGACGATGTAAGGCCTCACAGGCCGGTCCTCCTATA----------TATCGTACGTGTGTATGTACTG
CACTGTAGTTAGTACGTAGTGCTATGGATGTACGCGGTAGTAGGCTAGGTTGAAGGATGTAGAGTACGTAGTAGCGTTGA
TGCA----TGTCCTCGTGTTCGCACGGACATGCGCGCGGTACGTACGTCTGGCTACAAAATTTTGGTCCCCGGATTGTAG
CC-----------------------------------------------------------GCCGTAGCCCCTCTATATG
TGTAGCTCGATCGTAATCG-ATGTACCCTGGCTGCAAAATTTTGGCATGGATGTACGTTCTGTAGCCAATGATCCCCGGA
TATACTTATATAAGTTG----ATAAATAGTGGTCGTGTCTGCGAAAACTACGCACTAACTTCTTTC--------------
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>chr3B_590
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------------------------------------------AACGTGCTGAAACCGATGATGCAAAACCAAATGATC--
-TACCGACTGCCTCA-GCACACGAAACAGTAGCGTGCAATGT-GCTGCCTGGGCAGAAGG--GCCTCCACGTGAGTCCCC
GGCGCATGAACTTACGGCAACGTTTGACTATGGTCATTGCTACTTGCTCTTCGTGAAATCACTTCCCATCAA-ACGTGGC
GCGCACCCCATGCATGTTGGCCACGCCGGCCATCGGTGAAAGGCCGAGGTAACAGCGCACCACGGCCGGCAGCATGCACC
GTCCACGTAT--CCGGACCGCACCGCCGTTCACGACCTATATAAGTGGC-----CTCCGCTCTCGGGTGAAGCAGAGCAT
ATCAGCAGGCTAGCGGAGACAGACTTCGAGGACGTGTTACGAGC---AGACCGCGAGCAATGGCACAGCAGGGGAAGAAG
GCGACGGAGATGCAGGACCCGGAGATCAGGGCAGAGCAGGTGAAGAAGGCGCCGGAGCTGCAGGACTCGGAGACCCGGAC
ACAGCAGGTGAAGAAGGCGCCGGAGCTGCAGGACCCGGAGATCCGGGCAGAGCTGGACCGCCGCGCCCGCGAGGAGGGCG
AGACCGTCATCAAGAGCGGCGCCGGCGGCAAGACCCTCGAGGCGCAGGAGCGCCTGGCAGAAGGTACGTGCGC-------
-----TGGCGTATGCGTATATATATACCAGTTGTTCTAACTTGTTTCTTGAGCCATTGATGTGCTAACCTTGTGTTGATA
CGCTTG--------------CGTGCTGCAGGGCGTAAGAAGGGCGGGCTGAGCCGTGCGACTGGCTCCGGCAACGAGCGC
GCCGAGGACGAGGGCGGGGTGGTGATCGAGCCGGACGAGAAGAAGCTCGAGGAGGTCAAGAAGGATCTCGGGCGCGAATG
ATCGAGCGTGGTAGACGATGTACGGCCTCACAGTCCGGTCCTCCTATA----------TATCGTACGTGTGTATGA----
----------AGGATGTAGTGCTATGGATGTACGCAGTAGCAGGCTAGGTTGAAGGATGTAGCGTACGTAGTAGCGTTGA
TGCA----CGTCTTCGTGTTCGCACGGACATGCGCG--GTACGTATGGCTGGCTACAAAATTTTGGTCCCGGGATTGTAT
ATATGTAGCTCGATCGTAATCTATGTACCCTGGCTACAAAATTTTGGCATGTATGTACGTAGCCGTAGCCCCTCTATATA
TGTAGCTCCATCGTAAATCTATGTACCCTGGCTGCAAAATTTTGGCATGTATGTACGTTCTGTAGCCAATGATCCCTGGA
TATATG------AGTTG----ATAAATAGTGGCCGTGTCTGCGAAAACTCCACACGAACTTCTTTC--------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------S--------
---SSSS--S---S---S--S-------S-S---SS----SS--S-S-S-------S-S-S--S----SS-S-S--SS-S
--S---S------S-----S--S-----------S----S--S----S-S--S--------S------------S-----
--S--S-S------S-------SSS-S-SS-------S---S---S---SS----SS--S--------SSSSS-------
S--SS---S-----S-------------------------------------------SS--------------------
--S-------S-----------S-----S---S-------------------------------------S---------
------S-------------------------S---------------------------------------------SS
S-------S-----SS-------S-S----------------S--S----S---------SS----------S---S---
---S--S---------------------------SS---------------S--------------------S-------
------------------S-------------------------------------------------------------
----------SS-----------------S---S-----------S----------------SSS---------------
-S-------------------------S------------SSSSSSS-------------------------S-------
---------------S---------------------------------SS------S-S-------------S------
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----------------------------------------------------------S---------------------
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--S---------------------------------------------S-------------------------------
--------S-----------------------------S---------SSSSSSSSSS-------------S--------
S--------------------------S------S------------------------S---S----------------
----SSSS----------S-------------SS------------------------------------S---------
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-----------------SSSS------------------------------------------S-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_509
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---------TCCCCTGCGTCACGTCTATA---------------------------------------------------
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>reverse_2460
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-----------------------------------------------------------CGTGTTTGTGGGCGATTTGT-
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-----------------------------------
