>input_sequence_80419
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----------------------------------ATGCTGCTGGGCTCCTCCTTCGCGTCCCCGTTCACCCAGCTCCACC
TCTCGCCGGGCCCCAATGCGGGGTCGACGGCGCGGCCGGCGGCGG---GGCTGGTGCTGAGGATCGAGGCGGCGAAGCAG
CTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAAGCAGCACCCCAAGTA
CCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGC
TCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGCCGCAAGGCC
CAGCTCCTCCCCCCGCTCGAGTCCCAGTCCGGCGACGACTCCGCCGCCGCCG------AAGAGACCGCTGCTGCCTAG--
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>chr2D_1_TraesCS2D01G572300
CGACTGCGTCGTGCCGCCGGTGGCGCCCCCATCCACAGTCA------AGGCC------GA---GGAGGAGCCG--GCCCC
CGTTGAGCGCTACTCTTGGACCGGAGTAGTGCGTGCGTGGGTGAGCGCGCCACCGATTTGGCTCGGGGCGACGGAGGAGT
AGGAGGCGGCCTACCTCGACCACTGGCGCCAGCGATGGATGGCTGAGGAGCGCTGGCAAGCACCTCG-----AGC-TGCT
CG---------------------AGCACGGGGCCGAGGAGGAGGAGCGCGAGGCCGAGGAGGCGCG---------ACAGG
---CCGCGGCGGCACA---GCCCGCGGCCG------ACATCGCCGCCGTCTGGAACACGGCGTTCCCCTGGACCGGCCCT
GCACCGACGCTCATCGACCTCACCGCCCCCGA---CGTCG---------ACGATGAGGACGC------------------
---CTAGGGCAACGCGCCGCCTCGTTGTTTTAAGTTTCTTTTAATG--TTGAATTAAT--G---------TAATGTGGAC
GCATGGACTCTCGCCAACCTTCATGGCCGGTTTTAATGTTTAATTAATG-ATTGTTTTAA--TTTC----TAAATA----
---------TATTTTTT-CTCACGCCGTTAAAATGGGTTGGGCCAGCGTTGGGCGCATGCGCCGACCCAA----A-AGCG
GAATCGAACGTTGCTGTCCGCCGGACCGACCGA----AATGGACAAAAATCGGACAAAATCATCGTTCGTTTGGGTCGGC
CCGTTGGAGTTGCTCTTAGAACTCCTGTTTTCTCCTTTTTTCGCTGATTTTTGTTATCAGTTTGTCTAATTTATATCTAG
ATGTTTTTGAAGAATATCACATCTAAGCTCGTTCAAATATATAATACAGCAGCAAGGAAAAAAACTAAAACAAAAAAATA
GACCACGAATAAAACACTTCATCTGTCTTGTACACGTGTACCGGAGGCGCAAATATAAGTAGAGTGGAGAGCTAGCAGCT
A---GGCCAGGCCTGGAAAGAAACCCCGAGCAAAAAAAACCTTATCTTTATCCTATCCCATCCCCAATCCCACCTCC---
-----GCGAGCGAGG--GAAGGAAGACGAAGAAGATGCTGCTGGGCTCCTCCTTCGCGTCCCCGTTCACCCAGCTCCACC
TCTCGCCGGGCCCCAATGCGGGGTCGACGGCGCGGCCGGCGGCGG---GGCTGGTGCTGAGGATCGAGGCGGCGAAGCAG
CTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAAGCAGCACCCCAAGTA
CCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGC
TCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGCCGCAAGGCC
CAGCTCCTCCCCCCGCTCGAGTCCCAGTCCGGCGACGACTCCGCCGCCGCCG------AAGAGACCGCTGCTGCCTAGTG
ATGCTTCTTGCTTTTG-TTTCCCCCATTCTCTTCTCTGTTAATTAATCGTCGT---TCCCTTTGCTATTGCTGTTGTTCT
TGCTCCCCTGTAGACTGAACTTTGATACTACTCGGTACCACTTGGCTCTGAAATCTGTACTTTCTCTTCTTCCTGCAGCA
AGAATTAATCTTGGTACTACTACTTGATTGCATTCTTGGAGTATTTATGTATTGCCGTAATCTCTAGCATGGTCATGATG
GTTGA---TGAACAACCAAACAAACGAACAAAATATTACACACTTGCTAGTGTTACAGAGTAGGTACGTACGTACTTATC
TGAAGAATGCTCTGTCGCTCCAGTGT--CTTTTATGTCAGACTTTTCTGGGATATTATGAAATTTCAGAGTTGAATCAGA
GTTTAAATGGGGCGAGA--------------------------------------------TTGTTTGCACTGCAGCAGT
ACATCCGTCCTACGGGTAATTTGCGGGGACAGTTTCTTGGGATTCAGTCCAATGCGTG----------------------
-------------------------------------------------------------------CATCCTAGGCAGT
TCAGTACCAGCACAAGGAAGCTCCAATGC----CTGACATGAACTTGCCTCAGTTTGTTTCAAGTGCAGTTGCTCTCTAG
CTCGCATCTGATGGCTCATCTCAAACATCCTGGATGCCGCAGCTCATGAGCATTCTGGGACACAATCTTGCATGAACTTG
TTTGTCTGAACTCTCACTGATGATGGTGAACAACCAAACAAATGTTTAGTTCTGCATGAGAATTAATCTTGTACCTGATT
GCATCCTTGGAGTATTATCATTTTCATAAGAGATCCCTAGCACACTGATGATGGTGAACAACCAAACAAAATAAAAATCG
AGTGCGCTTTTGCTAGTAATGTAATGTGGAGACATTTCTTCGTATTCAGTCCAATACATATCCTACTAGTACCAGCAGAA
GCTACAGTAGTAGACTAATGTGAACTTGCTGTTTGTCTAAATTGAGTTGCTCTAGCTCGCATCTGATGCCTCCAGCTCAA
ACATCTTGGATGGCGCAGCTCATG
>chr2D_1
CGACTGCGTCGTGCCGCCGGTTACCCCGCCGTCCCCGCCCA------AAGCC------GA---GCCAGAGGAGCCGCCCC
CCTCGAGCGCTACTCCTGGACCGGAGTAGTGCGCGAGTGGGTCAGCGCTCCGCCGATCTGGCTCGGGGCGACGAAGAAGC
AGGAGGCGGCCTACCTCGACCACTGGCGCCGCGTTCGGCTGGCCGAGGAGCGCCGGGAGGGCGAGCGTCTGCAGA-TGCT
CG---------------------AGCGCGAGGCCGAAGAGGAGGCGCGCTAGGCCCAGGCAGC------GGCGGCGCA--
--------------------------------------------GCCCTCTGGAACACGGCGTTCCCCTGGGTCGGCCCT
GCACCGAC----------CTCACCGGCCACGA---CGCAGACGCCGACAACGACGAGGACGC------------------
---CTAGGGCAGCCCGTCGTCTAGTTTTTAG------TTTTTTATG--TTAATTAATGTAA-------------------
-TGTGGACTTTCGCCGGCCTTCGTGGCCGGCTTTTATATTTAATTAAATGCATGTATTTA--TTTT----TAAAATGCTT
T---TAAACTTTTTTTT-GGCGCGCCAACAAAATGGGTCGGACCAGCGTTGGGCGCTCGCGCCGACCCAA----A-CATA
GTTCCGGACGTTTGTGTCCGCCAGGCCGACCCA----AACGGACAAAAAGCGGACAAAAACGCCGTCCATTTGGGTCGGC
CCGTTGGAGTTGCTCTAAG-------------------------------------------------------------
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>chr2B_1
CGACTGCGTCGTGCAGCCGATGGCCCCGCCATCCACGGTCA------AGGCC------GA---GCCGGAGCCG--ACCCC
TGTCGAGCGCTACTCCTGGATGGGAGTAGTGCGCGAGTGGGTCAGCACACCGTTGGTCTGGACGGGGGCGACGCCGGCGC
AGGAGGCGC-GTACCTCAAACAATGGCGCCAGCGACGCCTGCCCGAGGAGTGCCGCCATGGAGAATACCTCGAGA-TGCT
CGAGCACGACGCCAAGGAGGAGCAACACGAGGCCGAGGAGGAGGCGCGCCAGGCCCAGGCAGT------GGCGACACAG-
--------------------------CCCGCGCCCGTCATCAACGCCGTCTGGAACACGACGTTCCCCTAGGCCGGCCCT
GCACCGACCCTCATCGACCTCACCAGCCCCGA---CGACG---------ATGATAAGGACGC------------------
---CTAGGGCAGCACGCCTCCTCGTAGTTAG------CTTTTTT-------A---ATGCTA-GTTAATGTGGATGTGGAC
GCGTGGACTATCGCCGGCCATCGTGGCCGGCTTTTAATGTTTAATTAATGTTTGTTTTTA--TTTT----AAAAATGTTT
G---TA----TTTTTTT-TGCGCATCGTCAAAATGGGTCGGGCGAGCGTTGGGCGCATGTGCCGACCCAA----A-CATG
AAAGCGGATGTTGGTGTCCGCCGGGCCGATCCA----AACGGACAAAAAGCGGACAAATTCACCGTCTGTTTGGGTCGGC
CCGTTGGAGTTGCTCT----------------------------------------------------------------
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>chr3D_1
CGACTGCGTCCTGCCGTCGGTGACCCCGCCATCCCCTGTCAAAGCCGAGCCG------GA---GCCGGAGTCG--TCCCC
CATCGAGCGCTACTCCTGGACGGGAGTAGTGCGCGAGTGGGTCAGCACGCCACCGGTCTGGATGGGGGTGACGCCGGCGC
AGGAGGCGGCGTACCTCGAGCAGTGGCGCCAGCGACGACTGACCGAGGAGCGCCGCCACGGCGAGTAGCTCGAGA-TGCT
CGAGCGCAAGGCCAAGGACGAGCAGCGCGACGCCGAGGAGGAGGCGCGCCAGGCGGCGGCGGCACAG-------------
--------------------CCCGCGCCCG------ACATGCACGCCCTCTGGAACACGGCGTTCCCCTGGGCCGGCCCT
GCGCCGACGCTCATCGACCTCACGGACCCCGA---GGACG---------ACGA---CGACGT------------------
---CTAGGGCAGCGCGCCGCCTCGTAGTTTA------GTTTGTT-------TTTAATTTTC-TTTAATGCAAATGTGGAC
GCATGGACTCTCGCCAGACTTCGTGGCCGGCTTTAATGTTTAATTAATG-TTATTTTTAT--TTTAAATATACATG----
---------TATTTTTT-CGCGCGCCGTCAAAATGGGTCGGGCCAGCGTTGGGCGCATGCGCCGACCCAA----A-CGCG
GAAGCGAACGTTCGTGTCCGCCTGGCCGAACTA----AACGGACAAAAAGCGGACAAAATCGCTGTCTGTTTGGATCGGT
CCGTTG--------------------------------------------------------------------------
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>chr5A_1
CGACTGCGTCGTGCCACCGGCGGCCTCGCCGTCCCCGGTCA------AGGCC------GG---ACCGGGGCCG--ACACC
CATTGAGTGCTACTCCTGGAAGGGAGTAGTGTGCGAGTGGGTCAGCACGCCGCCGATCTGAATGGGGGTGACGCCAACGC
AGGAGGCGGCGTACCTCAAACAATGGCGCCAGCGACGGCTGGCCGAGGAGCGCCGCGATGGCGAATACCTCGAGA-TGCT
CGAGCGTGACGCCGAGGAGGAGCAGCGCGAGGCCGAGGAGGAGGCGCGCAAGGCCCAGGAAGC------GGCGGCACAGG
---CAA------CGGC---AGCACAGCCCGCGCCCAACATAATTGCCGTCTGGAACACGACGTTCCTCTGGGCTGGCCCT
GCACCGACGCTCATCGACCTCACCGGCCCTGGCGGCGACG---------ATGA---GGATGC------------------
---CTAGGGCAGCGCGCC-CCTCGTAGTTAG------C----TT-------TTTTATGTTA-ATTAATGCAAATGTGGAC
GCGTGGACTATCGCCGGCCTTCGTGGCCGGCTTTAATGTTTAATTAATG-TTTGTTTTTA--TTTT----CAAAATGTTT
GCATTC-----TATTTT-TCCACGCCATCAAAATGGGTC-GGCCAGCATTGGGCGCATGTGCCGACCCAA----A-CGTC
GAAGCGAACGTTGGTGTCTGCCGGGCCGACCCA----AACGGACAAAAAACAGACAAATTCGTCGTCCGTTTGGGTCGGC
CCATTGGAGTTGCTCTTA--------------------------------------------------------------
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>chr5A_1
CGACTGCGTCGTGCCGCCGGTGGCCCCGCCGTCCCCGCCCA------AAGCC------GAGCCGGAGGAGCCG--GCCTA
CCGCGAGCGCTACTCCTGGACCGGAGTAGTGCGCGAGTGGGTCAGCGCTCCGCCGATCTGGCTCGGAGCGACGGAGAAGC
AGGAGGCGGCCTACCTCGACCACTGGCGCCGCGTTCGGCTGGCCGAGGAGCGCCGGGAGGGCGAGCGTCTGCAGA-TGCT
CG---------------------AGCGTGAGGCCGGCGAGGAGGCGCGCCAGGCCCAGGCAGC------GGCGGCAAAG-
--------------------------CCCA------ACATCGCCGTTGTCTGGAACACGGCGTTCCCCTGGGCCGGCCCT
GCGCCGACGTTGATCGACCTCGCCGGTCCCGA---CGCA------------------GACGC------------------
---CTAGGGCAGCGCGTCGTCTTGTTTTTAG------TGTTTTT-------ATTAATGTAA-------------------
-TGTGGACTTTCGCCGGCCTTCGTGGCCGGCTTTTATATTTAATTAAATACATATATTTA--TTTT----CAAACTGCTC
GCAATA----TTTTTTT-GGCGCGCCTTTAAAATGTGTCGGGTCAGCGTTGGACGCTCGTGCCGACCCAA----A-CACA
GCGTCGGACGTTTATGTCCGCCGGACCGACCTA----AACGGACAAAAAGCGGACAAAAGCACCGTCCGTTTGGATCGGC
CCATTGGAGTTGCTCTTA--------------------------------------------------------------
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>chr5A_1
CGACTGCGTCGTGCCGTCGGTGGCCCCGCTGTCCCCGCCCA------AAGCC------GAGCCGGAGGAGCCG--GCCTA
CATCGAGCGCTACTCCTAGACCGGAGTAGTCCGCGAGTGGGTCAGCGCTCCGTCGATCTGGCTCGGGGCGACGGAGAAGT
AGGAGGCGGCCTACCTCGACCACTGACGCCGCGTTCGGCTTGCCGAGGACCGTCGGGAGGGCCAGCGCCTGCAGA-TGCT
CG---------------------AGCGCGAGGCCGAAGAGGAGGCGCGCCAGGCCCAGGTAGC------GGCGGCGCAGG
---CAG------CAGC---GGCAAAGCCCG------ACATCATCGGCGCCAAGAACGCGGCGTTCCCCTGGGCCGGCCCT
GCACCGACGTTGATCGACCTCACCGATCCCGA---CGCA------------------GACGCTGCCACCGACGAA---GA
CGCCTAGGGCAGCGCGTCGTCTAGTTTTTAG-------------TATTTTAATTAATGTAA-------------------
-TGTAGACTTTCGCCGGCCTTCGTGGCCGGCTTTTATGTTTAATTAAATATATGTATTTA--TTTT----CAAAATGCTT
GCAATAC---TTTTTTT-GGCGCGTCGATGAAATGGATCGGGCCAGCGTTGGGCGCTCGCGTCGACCCAA----A-CACA
GTGCCGAACGTTGGTGTCCACCGGGCCGATTCA----AATGGACAAAAAACGGACAAAAGCGTCGTCCGTTTGGGTCGGC
CCGTTGGAGTTGCTCT----------------------------------------------------------------
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>chr5A_1
CGACTGCGTCGTGCCGCCGGTGGCC-CGCTGTCCCCGCCCA------AAGCC------GAGCCGGAGGAGCCG--GCCTA
CCGCGAGCGCTACTCCTGGACCGGAGTAGTGCGCAAGTGGGTCAGCGCTCCGCCGATTTGGCTCGGGGCGACGGAGAAGC
AGGAGGCGGCCTACCTCGACCACTGGCGCCGCGTTCGGCTGGCCGAGGAGCGCCGGGAGGGCGAGCGTCTGCAGA-TGCT
CG---------------------AGCGCGAGGCCGATGAGGAGGCGCGTCAAGCCCAGGCAGC------GGCGGCAAAG-
--------------------------CCCG------ACATCACCGTCGTCTGAAACACGACGTTCCCCTGGGTCGGCCCT
GCGCCGACATTGATCGACCTCACCGGTCCTGA---TGCA------------------GACGCCGCCGCCGACGAG---GA
CGCCTAGGGCAGCGCGTCACCTAGTTTTTAG-------------TG--TTAATTAATGTAA-------------------
-TGTGGACTTTCGCCGGCCTTCGTGGCCGGCTTTCATGTTTAATTAAGTGCATGTATTTA--TTTT----CAAACTGCTC
GCAATACCTTTTTTTTT-GGCGCGCCGACGAAACGGATCGGGCCAGCGTTGGGCGCTCGCGCCGACCCAA----A-CACA
ACGCCGGACGTTTATGTCTATCGGGCCGATCCA----AATAAACAAAAAGCGAATAAAAACACCGTCCATTTGAGTCGGC
CCGTTAAAGTTGCTCTTAG-------------------------------------------------------------
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>chr3B_1
CGACTATGTCCTACCGCCGGTGGGCCCGCCTTCCCTCATCA------AGGCCGAGACGGA---GCCAGAGCCG--ACCCT
CATCGACCGCTACTCATGGACTGCGCGAGTGCGCGAGTGGGTTAGTGCTCCACCGGTCTGGATGGGGGCGACGCCAGCGC
AGGAGGCGGCGTACCTCGAACAATGGCGCTAGCGACGGCTAGCCGAGGAGCGCCGCCACGGCGAATACCTCGAGG-TGCT
TGAGCGTGACGCCGAGGAGGAGCAGCGCGAGGCCGAGGAAGAGGCGCGCGAGGCCCAGGAAGC------GGCAGCACAGG
---CAGCGGCGGCACA---GCTCGCGTCCG------ACATCAACGCCGTCTGGAACACAGCGTTCCCCTGGGCCGGCCCT
GCGCCGACGCTCATCGACCTCACCGGCACCGA---TGA---------------------------CGACGATGAG---GA
TGGCTAGGGCAGCGCGCCGCCTCGTAGTTAG------ATTTTTT-------T---ATGTTT---------AGATTTGGAC
GAATGGACTATCGCCTACCTTCGTGGCCGGCTTTAATGTTTAATTAATG-TTTGTTTTAA--TTTT----CAAAATGTCT
GC---A----TTTTTTC-CGCACGCCGTCAAAATCGGTTGGGCCAGCGTTGGGCGCATGCGCCGATCCAA----A-CGTG
AAAGCGGATGTTGATGTCCGCCGGGCCGACTCA----AACGGACAAAAAGCGGACAAATTCACCGTCCGTTTGGGTCGGC
GCGTTGGAGTTGCTTTA---------------------------------------------------------------
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>chr1A_1
CGACTGCGTCGTGCCGCCGGTGGCCTCGCCGTCCCCGCCCA------AAGCC------GAGCTGGAGGAACCG--GCCTA
CATCGAGCGCTACTCCTGGACCGGAGTAGACCGCGAGTGGGTCAGCGCTCCGCCGATCTGGCTCGGGGTGACGGAGAAGT
AGGAGGCGGCCTACCTCGACCACTGGCGCCGCGTTCGGCTTGCCGAGGACCGTCGGGAGGGCCAGCGTCTGCAGA-TGCT
CG---------------------AGCGCGAGGCCGAAGGGGAGGCGCGCCAGGCCCAGGCAGC------GGCGGCGCATG
---CAG------CAGC---GGCAAAGCCCG------ACATCATCGCCGTCTGGAACACGGCGTTTCCCTGGGCCGGACCT
GCGCCGATGTTGATCGACTTGACCGGTCCCCA---CGCA------------------GACGCCGCAGCCGACGAG---GA
CGCCTAGGGCAGCGCGTCATCTAGTTTTTAG-------------TATTTTAATTATTGTAA-------------------
-TGTGGAATTTCGCCGGCCTTCGTGGCCGGCTTTTATGTTTAATTAAACGCACGTATTTA--TTTT----CAAAATGCTT
GCAATAC---TATTTTT-GGCGTGCCGATGAAATGGGTCGGGCTAGCGTTGGGCGCTCGTGCCGACCAAA------CACA
TCGCCAGACGTTTGTGTCCGCTGGACCGACCCA----AACGAACAAAAAGCG-ACAAAAACGCCGTCCGTTTGGGTCGGC
CCGTTGGAGTTGCTCTTAGACCTCCT------------------------------------------------------
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>chr7A_1
CGACTGCGTCGTGCCGCCGGTGACCCCGCCGTCCCCGCTCA------AAGCC------GAGCCGGAGGAGCCG--GCCTA
CCTCAAGCGCTACTCCTGGACCGGAGTAGTGCGTGAGTGGGTCAGCTCTCCGCCGATCTGGCTCGGGGCGACGGAGAAGC
AGGAGGCGGCCTACCTCGACCACTGGCGTCGCGTTCGGCTGGCCGAGGAGCGCCGGGAAGGCGAGCGCCTGCAGATTGCT
CG---------------------AGCGCGAGGCCGAAGAGGAGGCGCGCCAGGCCCAGGCAGC------GGCGGCGCAA-
--------------------------GCCG------ACATCGCAGCCCTCTAGAACACGGCGTTCCCCTGGGTTGGCCCT
GCGCCGACGTTGATCGACCTCACCGGCCCCGA---CGCA------------------GACGCCGCCGCCGACGAG---GA
CGCCTAGGGCAGCGCAGCATCTAGTTTTTAG----TTTTTTTTATG--TTAATTAATGTAA-------------------
-TGTGGACTTTTGCCGGCCTTTGTGGTCGGCTTTTATGTTTAATTAAATGCATATATTTA--TTTT----TAAAGTGCTT
GCAAGAC---TTTTTTTTGGCACGCCGACGAAATGGGTCGGGCCAGCGTTGGGCGCTCGCGCCGACCCAA----A-----
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>chr4B_2
-GACTGCGTCCTGCCGCCGGTGGCCCTGCCGTCCCCGGTCA------AGGCC------GA---GCCAGAGCCG--GCCCC
CATCGAGCGCTACTCTTGGGCGGGAGTAGTGCGCGAGTGGGTCAGCGCATTGCCGGTCTGAATGGGGGTGACACCGGCGC
AGGAGGCGGCGTACCTCGAACAATGGCGCCAGCGACGGATGGTCGAGGAGCGCCGCGACAGCGAATACCTCGAGA-TGCT
CGAGCGCGATGCCGAGGAGGAGTAGCGCGAGGCCGAGCAGGAGGCGCGCCAGGCCCAGGAAGC------GGATGCACAGG
---CAGTGGTGGCACA---GGCCGCGCCCG------ACATCAACGTCGTCTGGAACACGGCGTTCCCCTGGGCCGGCCCT
AGGCCGACATTCATCGACCTCACCGGCCCCGA---CGA---------------------------CGACGACGAG---GA
TGCTTAGGACAACGCGCCGCCTCGTAGTTAG------TTTTTTATG--TTAATTAACA--T---------AGATGTGGAC
GCGTGGGCTATCACCAGCCTTCATGGCCGGTTTTAATGTTTAATTAATG-ATTGTTTTTTATTTTC----AAAATG----
---------TTTTTTTG-CGCGCGCCGTCGAAATGGTTCGGGCTAGCGTTGGGCGCATGCGCCGACCCGACCCAAATATG
GAAGCAGACATTAATGTCCGCGGGGCCTATCCA----AACAGATAAAAAGCGGACAAATGCACCGTTCGTTTGGGTCTGC
GCGTTAGACTTGCTCT----------------------------------------------------------------
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>chr2D_42
-----------------------------------------------AGCCC------GA---GCCGGAGCCG--TCCCC
CATCGAGCGCTACTCCTGGATGGGAGTAGTGCGCGAGTGGGTCCGCACGCCGCCGGTTTGGGTGGGGGCAACGCCTGCGC
AGGAGGCGGCGTACCTCGAGCACTGGCGCCAGATCCAGGTGGCCGAGGAGCGTCGCAACGGCGAGTAACTCAAGA-TGCT
CGAGCGCGACCTCGAGGAGG-GCAGCGCGAGGCCGAGGAGGAGGCGCGCCAGGCCGCGGCTGCACAGGCGGCCGCACAGC
CCCCCGCGCCGGCACA---GCCTGCGCCCG------ACATGAACGCGCTCTGGAACACGGCGTTCCCCTGGGCCGGGCTG
GTGTCAACGCTCATCGACCTCACGGACCCCGA---GGA---------------------------CGACGACGACGACGA
CGCCTAGGGCAGCGCGCCGCCTCGTAGTTTA------GGTTGTT-------TTTCTTTTTA-TTAAATGCAAATGTGGAC
GCGTGGACTCTCGCCGGCCTTCGTGGCCGGCTTTAATGTTTAATTATTG-TTTTTTTC---------ATATGCATGCATT
--------CTTTTTTTC-CTAGCGCCGTCAAAATGGGTCGGGCCAGCGTTGGGCGCATGCGCCGACCCAA----A-CGCG
GAAGCGGACATCCGTGTCCGCCTGGCCGACCCA----AACGGACAAAAAGCGCATAAAATCGCCGTCCATTTGGGTCGGC
CCGTTGGAGTTGCTCTTAGA------------------------------------------------------------
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>chr5A_52
------------------------------------------------------------------GGAGCCG--TCCCC
AATCGAGTGCTACTTCTGGATGGGAGTAGTGCGCGGGTGGGTCAGCGCGCCACCAGTCTAGGTTGGGGCGATGCCGGCGC
AGGAGGCAGTGTACCTCGAACATTGGCGCCAGCGACGGCTGGCCAAGGAGCGCCGCCACGACAAGTACCTCGAGA-TGCT
CGAGCGCGAGGCCGAGGACGAGCAGCGCGAGGCCGAGGAGGAGGCGCGTCAGGCCGCGGCGGCACAG-------------
--------------------CCCGCACCCG------ACATGAACGACCTCTGGAACACGACGTTCCCATGGGCCGGCCCT
GCACCGACGCTCATCGACCTCACAGACCCCGA---GGA---------------------------GGAGGACGACGACTC
CTA----GGCAGCGCGCCGCCTCATAGTTTA------GTTTGTT-------TTTAATTTTC-TTAAATGCAAATGTGG-C
GTGTGGACTCTCGCTGGCCTTCGTGGCCGGCTTTAATGTTTACTTAATA-TTTATTTTAT--TTTAAACATGTATGCATT
TTTTTC-------------TCGTGCCATTAAAATAGGCCGGACCAGCATTGGACGCATGCGACGAACCAA----A-CGCA
GAAGCGAACGTTCATATCCGCCTGACCGATTCA----AATGGATAAAAAAGG-ATAAAATCGCCGTCTGTTTAGGTCGAC
CCGTTG--------------------------------------------------------------------------
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>chr2A_54
--------------------------------------------------------------------AGCCG--TCCCC
CATCAAGCGCTACTCCAGGATGGGAGTAGTGCGCGAGTGGGTCTCCGCGCCACCGATTTGGATGGAGGTGACACCGGCGC
AGGAGGCGGTGTACCTCGAGATGTGGCGCCAGCGACGGCTGGCCGAGGAGCGCCGTCACGGCGAGTACAAGGAGA-TGCT
TG---------------------AGCGCAACCTCGAGGAGGAGGCGCGCCAGGCCGCGGCTGCACAGGCGGACGCACAGC
------------------TGCCCGCGACTG------ACATTGCCGCCGCCTGGAACACGGCGTTCCCCTGGACCGGCCCT
GCGTCGACGCTCATCGACCTCACCGACCCTGA---GGA---------------------------CGACGATGAC---AA
CGCCTAGGGCAGCGCACCGCCTCGTAGTTTA------GTTTGTT-------TTTAGTTTTA-TTCAATGCTAATGTGGAC
GCGTGGACTCTCGCCGGCTTTCTTGGCTGGCTTTAATGTTTAATTAAGT-TGTTTTTTAT--TTTAAATATGCATGCACT
ATTTTC-----TTTTTG-TCAACGCCGTCAAAATGGGTCGGGCGAGCTTTGGGCGCATACGTCAA-CCCA----AACACG
GAAGCGGACGTCTATGTTCGTTTGACTGATCCAAACGAACG---AAAAGCGA-ACAAAATTGCCGTCCCTTTGAGTCAGC
CCCTTGGAGTTGCTCTAAGAA-----------------------------------------------------------
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>chr3A_71
--------------------------------------------------------------------------------
-------CGCTACTCCTGGACGGGAGTGTTGCGTGAGTGGGTGTCCGCGCCACCTGTTTGGATGGGGGTGACCCCGGCGC
AGGAGCAGGCGTACCTCGAGATGTGGTGCGGGTGCTGGCTGGCCGAAGAGCGCCGTCGCGACGAGTACGAGGAGA-TGCT
CG---------------------AGCGCGACCTCGAGGAAGAGGCGCGCCAGGCCGTGGTTGTATAGGCGGCCGCACAGC
CCCCCGCGCCGGAACAGCTGCCCGCGGCCT------ACATCGCTGCCGATTGGAACACGGCGTTCCCCTAGGCCGGTCTT
GCGCCGACGCTCATCGACCTCACCGCCGCCGC---CGC------------------------------------------
CGCCTAGGGCAGCGCACCACCTCGTAGTTTA------GTTTTTT-------T---AGTGTCTTTTAATGCTAATGTGGAT
GTGTGGACTCTCGCCGGTCTTCCTGGCCGGCTTTAATGTTTAATTAAAT-TA-GTTTTAT--TTTAAATATGCATGCATA
--------ATTTTTTTG-TCGGCGCCGTCAAAATGGGTCGGGCGAGCGTTGAACGCATATGCCGACCCCA----AACGCG
GAAGCTAACGTCCGTATCCACCTGACCGACCCA----AACG---AAAACCGA-ACAAAATCGTCGTCCGTTTGGGTCGGC
CCGTTGGAGTTGCTCT----------------------------------------------------------------
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>chr2A_852
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--------------------------------CATGTGTACTTGAGGCCCAAATATAAGTAGAGTGGAGAGCTAGCTATA
TAGGGGCCTGGCCTGGGAAGAAACCCAGAACAAAAAAGACCTTATCTTTATCCTATCCCATCCCCAATCCCACCTCC---
-----GCGAGCGAGAGAGAAGGAAGACGAAGAAGATGCTGCTGGGCTCCTCCTTCGCGTCGCCGTTCACCCAGCTCCACC
TCTCGCCGAGCCCCAATGCGGGGGCGGGGGCGCGGCCGGCGGCGG---GGCTGGCGCTGAGGATCGAGGCGGCGAAGCAG
CTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAAGCAGCACCCAAAGTA
CCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACTTCGTGGAGC
TCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGCCGCAAGGCC
CAGCTCCTCCCGCCCCTCGAGTCCCAGTCCGGCGACGACTCCGCGGCCGCCGCCGCCGAAGAGACC---ACCGCCTAGTG
ATGCTTCTTGCTTTTGCTTTCCCCCATTATCTTCTCTGTTAATTAATCGTCGTCGTTCCCTTTGCTGCTGCTGCTGTTCT
TGCTCCCCTGTAGACTGAACTTTGATACTGCTCGGTACCGCTTGGCTCTGAAATCTGTACTTTTTCTTCTTCCTGCGGCA
AGAATTAATCTTGGTACTACTACTTGATTGCATTCTTGGAGTATTTATGTATTGCCGTAATCTCTAGCATGGTCATGATG
GTTGATGATGAACAACCAAACAAACGAACAAAGTATTACACACTTGCTGGTGTTACATAA--------TACGTACTTATC
TGAAGAATGCTCTGTCGCTCCAGTGTGTCTTTTATGTCAGACTTTTCTGAGATATTATGAAATTTCAGAGTTGAATCAGA
GTTTAAATGGGACGGGA--------------------------------------------TTGTTTGCACTGCAGAAGC
ACATCCGTCATACTGGTTATTTGCGGTGACAGTTCCTTCGGATTCAGTCCGATGCGTG----------------------
-------------------------------------------------------------------CATCCTAGGCAGT
TCAGTACCAGCACAAGGAAGATCCAATGC----CTAACATGAACTTGATTCAGTTTGTTTCAAGTGCAGTTGCTCTCTAG
CTCGCATCT------------CAAACATCCTGGATGCCGCAGATCATGAGCATTCTGGGACACACTCTTACATGAACTTG
TTTGTCTGAACTCTCATTGATGATGGTGAACAACCAAACGAATGTTTAGTTCTGCATGAGAATTAATCTTGTACCTGATT
GCATCCTTGGAGTATTATCATTTTCATAAGAGATCCCTAGCACAGTGAGTGA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>chr2B_852
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CACGTGTACTCGAGGCCCAAATATAAGTAGTCCGGCGGAGCAGAGCAG
GAGGCCTGCT-CCTGGAAAGAAACCCCGAGCAAAAAA-ACCTTATCTTTATCCTATCCCATTCCCAATCCCACCTCCACC
TTCGAGCGAGAGCGAGAGAAGGAAGACGAAGAAGATGCTGCTGGGCTCCTCCTTCGCGTCGCCGTTCACCCAGCTCCACC
TCTCGGCGAGCCCCAATGCGGGGGCGGGGGCGCGGCCGGCGGCGGCGGGGATGGTGCTGCGGATCGAGGCGGCGAAGCAG
CTGACGGGGCGGGTGGTGACGACCAAGGCGAACAAGACGGTGGGGGTGGAGGTGGCGCGGCTGAGGCAGCACCCAAAGTA
CCACCGCCGGGAGAAGATCAAGAAGAAGTACCAGGCGCACGACCCCGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGC
TCGTCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCGTCCCGCCCCGCGACACCCGCCGCAAGGCC
CAGCTCCTCCCGCCCCTCGAGTCTCAGTCCGGCCAAGAATCCGCCGCCGCCGCCGCCGAGGAGACC---GCCGCCTAGTG
ATGCTTCCTGCTTTTGCTTTCCGCCGTTCTCTTCTCTGTTAATTAATCGTCGTCGTTCCCTTTGCTGCTGCT--------
-----CCCTGTAGACTGAACTCCAATACCATTATGTACCACCTGGCTCTGAATTTCGTTTCTTTTTC-----------CA
AGAATTAATCGTG-------TACCTAATTGCATTTTTGGAGTATT-ATCTATTTTCGAAATCCCTGGCACAGAGAGTAAT
TG------TAAACAACCAACCAACCAAACAATCGGTTTCACATTTTGCCATATACGAATCCAATGTCTGCTACTCCAATC
TGCCTT---------------------TCTTTTATGTCAGACTTTCCTGTGAAGTGTGTGTGTTAGAGTTGAGATATCTA
TAAACTTGACAAATCAACAACATTTTTTATGTCAGACTTTCCTATGAAACGGGTGCAAGATTTGCTTGCATTGCAGTAGT
ACATCCTTCCTACTAGTAATCTATGGAGACATTTTCTTCAGATTCAGTCTAATGCATATACTCCCTCCATTCCGAATTAC
TTGTCTCACGTATAATAGTTCTAGATACATCCATTTCAGCGACGAGTAATTTGGAACGGAGGGAGTACATCCTAGGCAAT
TCAGTACCAGCACAAGGAAGCTCCAATGCCAGACTGACATGAACTTGCTTCAGTTTGTCTCAAGTGTGGTTGCTGTCTGG
CTCACATCTGGTGCCTCAACCCAAACATCTTGGATGTCGCCGCTCATGAGCACTCCGGGGGACA----TACATGAACTTG
TTTGTCTGAACTCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>SNPs
------------------------S--S--------S-------------------------------------------
-----------------------------------S--------------------------------------------
-------------------------------------------S---------S------S--SS---------S-----
-----------------------------S--------------S------------------S-S--------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
------------------------------SSSSS-------S-------S-S---S---S-------------------
---------------------------------------------------------------------------S----
----------------------------------------------------------------------------S---
-------------S-----------------S-----------------S------------------------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-----S---------------------------SSSS
S-------S----------------------------S------------------------------------------
--------------S---------------------------------------------S-------------------
--------S--------------S--SS----------------------------------------------------
--------------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S--S---------------------------------------------------SSS--S--------
------------------------------------------------------------------SS-----S------
---------------------------------------------------------------S------------S---
--------------------------------------------------------------------------------
--------------------------------S---------------S--------S-SS-SSSS-S------------
-------------------------------------------------S------------------------------
-----------S--S-------------------------------------------------------------S---
-------------S------------S-----------S-----------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
----------S--S----S-S-------------------------------------------S----S----------
----------------S----------------------S----------------------------------------
--------------------------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_734
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGCG
GAATCGAACGTTGC------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>reverse_2012
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------GCGAGATTGTTTGCACTGCA-------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------
