>input_sequence_80414
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-------ATGCATGACATCATCACTGGCGGGCCGTCGACTCCAGCAACAGCTGTGCAAGTCATCAAAGGTGTGGTGCCGC
TGGCCAACGACCCCACCACCCACTTCGGTGACATGTATGTCATCGACGACCTGCTGACGGAGGGGCCGGACGCAGCGTCC
CCCGCCGTCGGCAGGGCACAGGGCTTCTTCCAGTTCGCGTCGATGACGGAGTACGCGCTGCTGCTCACTGCCAACTTCGT
GTTCACGGCAGGGAGCCATAACGGGAGCTCTGTGGCCGTGCTCTCAAGGGACGTCATCTTCGATACCGTCAGGGAGCTCC
CGATCGTGGGCGGCACTGGCGGGCTCCGTGGTGCGACCGGGTACGGTCTGCTCCGGACACACTCCGCCAACACCACCACC
AGGAACGCGGTGCTCAAGATTGATATGTACCTGCGCGTGTAG--------------------------------------
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>chr2B_1_TraesCS2B01G067500
TCAGATGCTCTATTTTCAAAAGGAATATTTTTTGTGTTATATAATTTATATTAGGGTGATAAAATCGGCAACCTAGATAT
ACGCATAGGACTTGTAAACTGAAACGTAGGGAGTATTATATATACAGTAAGATTATTTGCAGAGCATAAATAAATAAAAG
CTACTACAGAAAGTACCACGAAATGATCATCACCTAGAAAGTTATGTAAATGTCACTATTCTTAATACTGTTGCTCAAAT
TTCACTTCCATCATTGCCAGTC-------------AGAGAGACGTTGGTGGGCTTATATGTACACTTGTGCCTTAGGCCA
ACTCCAACGTGGCAACCCAAACAGACGTGGATTTTATCCGAGTTGAAGTTGGCCTTAGCTTCTCAGCGGCTCAGCATATA
TATGTGTCTTCCTGGCTCGAGCATGGCGGCTTCATCTGCATCTATCCACCATCTCATTGCATCTCAGGTTGACATAGCCA
GTTCAATCAATTATACTCGGGAACTAGGGCT-ATTCCCTATTCCTT----------------------------------
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-------------------------------------------------------------GTACGAAAAATACAGGGCC
CATTCTTAATGATGTAACTCATCAATAATCATGGCTGCCCAAGTAGTTGACATGCCCAACAGTTG---------------
-ACTTCACATAACTTACATAGATGCCTCCTCATCATTT-GCGCTCTAATTCACCGTCCACCTCATCATGGCTGCCCGTAG
TAGATGCACTATTCAATTATTGTTCTTTTTTTTAATATTAGAAAGATGAGACTCAAATACACCTTTGTGTAAAAATGAAT
GCACTTAACATGGGCGCACGTTCCCGGCTGCTTTGCCGCCGG-GTCCTTTCCAGTTTTCCTATATAAAGGGTACGAGGCA
GAGCGTGTAACCATAGAATCAGCTCATGCACATATGTCCAATACATCCTAGTACAAGCCATGGCCATCAAGCACACCATG
CAGCTCCTACCAGCCTTGGTCTTCGCTCTAGCCCTTGTCCTTAGGGCATCAGCAGATGCAACGGAGACGATCCACCTCAA
GTTCTACATGCATGACATCATCACTGGCGGGCCGTCGACTCCAGCAACAGCTGTGCAAGTCATCAAAGGTGTGGTGCCGC
TGGCCAACGACCCCACCACCCACTTCGGTGACATGTATGTCATCGACGACCTGCTGACGGAGGGGCCGGACGCAGCGTCC
CCCGCCGTCGGCAGGGCACAGGGCTTCTTCCAGTTCGCGTCGATGACGGAGTACGCGCTGCTGCTCACTGCCAACTTCGT
GTTCACGGCAGGGAGCCATAACGGGAGCTCTGTGGCCGTGCTCTCAAGGGACGTCATCTTCGATACCGTCAGGGAGCTCC
CGATCGTGGGCGGCACTGGCGGGCTCCGTGGTGCGACCGGGTACGGTCTGCTCCGGACACACTCCGCCAACACCACCACC
AGGAACGCGGTGCTCAAGATTGATATGTACCTGCGCGTGTAGGTGCAT----ACCATAGGTCTGAACATATTTCCATGCA
TCTGATGGGTGCTTGCATAAAAAAA-CATCCACGATTTGTGTG------TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTTATGGTCTGGGATGTCTTCAGCATGTCAGTGCGTCCGATTTATATGTTTAGGTTCCAGGTCGAAGTGT--TAAT
GCGAGTTCATGATTGATGGAGATTTTTGTTAAAATAAATGAGGTACAACAGTCTCGTTTGTTTGCTGTCATTGAAATTTT
CCTTCACTCTTTGGGAGGAACAAGAGGCCCGATCTTTGAAAACATGGGT-------------GCACAGCCGGAACATCGT
GTATATAGTACGGGGCAATGCAAGAATTTCGG--------------------CCAGATTTGCTTACAAAACCACCCAATT
ATGCGAGATAAAAGGAATAATTAAAGGGCTTTTGAAAACATGGGTGCATTGCACCATTGATGAACAGT------------
-----------AAAATTCTCACATTTTGTGCCTTCAAAGGTGCACAAATTTATTAAGGTGCTTGAATTTTGTATGTCGGA
ATGTCATCTGTGGACCTTGTGACAAAAAATCAAATTAGTGCTCGAACTTTTGGGCACTCATTTTGTTTTCCTTTTGTCAG
GAGCCCCTCAGG-----TCTCATTTCGCCTTCAAATTTTGCAAGCACCTAAAACATTTTTGCATCTTCAAATCCAATAAG
TTTCATAAAAAAATG----CATTTTGTTCAAATTTTGCTGTTCACCATGGGTGCAATGCAACCAGCTTCGGCTAGAACTT
CTCCATTGATGGTGCTAACAGGCAATAAACTGGAGTTCTCCAC-ATAGTTATGGCAACCTCATCTCTCTTAAGACCTACT
TTGCAC-------------------------------ATTATATCCTCGTCGTACCGTAGTTCATGAATTAGGATTCAGA
AGTCAGAACGAATTACATTGTTGAGGGATATTCTGTTATGCACATCGGAAGCTTGCTAGTCAGGTTAATTTATCAAACTA
AAGGACAGCTGATGTAGATATCTAGGTTAGTG
>chrUn_115
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----------------------------------ATTATATATACAGTAAGATTATTTGCAGAGCGTAAGTAAATAAAAG
CTACTACAAAAAGTAACAAGAAATGATCATCACCTAGAAAGTTGTGTAAATGTCACTATTCCTAATACCGTTGCTCAAAT
TTCACTTCCATCATTGCCAGTCGGGGATAGCAGCCAGAGAGACGTTGGTGGGCTTATATGTGCCCTTGTGCCTTAGGGTG
ACTCCAACGTGGTAACCCAAACAGACGTGGATTTTATCCGAGTGGAAGTTGGCCTTAGCTTCTCAGCGGGTCACC----A
TATGTGTCCTCCTGGCTCGAGCCTGGCGGCTTCATCTGCATCTATCCACCATCTCATTGCATATCAGGTTGACATGGCCA
GTTCAATAAATTAAACAT--GAACTAGGGCT-ATTCCCTATTCCTTGTACTCCCTCCGTTTTTGTTCACTCTGCATATTA
GGTTTGACTAAAGTCAAACTTCATAAAGTTTGACCAAGTTTATAGATAAAATTATGAACATTTACAATAGCAAATCTATA
TGATGTGAAAATGTATACAATGATGAATCTAATGGTATTGATTTGTTATTGTATATGTTAATATTTTTCTATATAAACTT
TATCAAAGTTTAGAAAGTTTGACTATGACCAATGCATGCGGAGGAAATAGAAATGGAGGGAGTACGAAAAATACAGGGCC
CATTCTTCATGATGTAACTCATCAATAATCATGGCTGCCCAAGTAGTT----------------G---------------
-ACTTCACATAACTTACATAGATGCCTCCTCATCATTT-GCGCTCTAATTCACCGTCCACCTTATCATGGCTGCCCAT-G
TAGATGCACTATTCAATTATTGTTCTATGTTTTAATATTAGAAAGATGAGACTCAAATACACCTTTGTGTAAAAATGAAT
GCACTTATCGTGGGCGCACGTTCCCTGCTGCTTTGCCGCC-G-GTCCTTTCCAGTTTGCCTATATAAAGGGTTCGAGCCA
GAGCATGTAAACATAGAATCAACTCATGCACATCTGCCCTATACATCCTAGTACAAGCCATGGCCGTCAAGCACACCATG
CAGCTCCTACCAGCCTTTGTCTTCGCCCTAGCCCTTGTCCTTAGGGCATCAGCAGCAGCAGCGGAGACGATCCACCTCAA
GTTCTACATGCATGACATCGTGACTGGC---------AGCCCAGCAACAGCAGTGCAAGTCATCAAAGGCGTGGTGCCGC
TGGCAAACGACCCCACCACCTACTTCGGCGACATGTATGTCATCGACGACCTGCTGACGGAGGGGCCGGACGCAGCGTCC
CCCGCCGTCGGCAGGGCACAGGGCTTCTTCCAGTTCGCGTCGATGACGGAGTACGCGCTGCTGCTCACTGCCAACTTCGT
GTTCACGGCGGGGAGCCATAACGGGAGCTCTGTGGCCGTGCTCTCAAGGGACGTCATCTTCGATACCGTCAGGGAGCTGC
CGATCGTGGGCGGCACTGGCGGGCTCCGTGGTGCGACCGGGTACGGTCTGCTCCGGACACACTCCGCCAACACCACCACC
AGGAACGCGGTGCTCAAGATTGATATGTACCTGCGCGTGTAGGTGCA----GACCATAGGTCTGAACTTACTTTCATGCA
TCTGGTGGGTGCTTGCATAAAAGAAGCATCGACGATTTGTGTG------TGTGTGTGTGTGTGTGTGT------------
------TATGGCCCGGGATGTCTTCAGCATGTCAGCGCGTCTGATTTTTTTGTTTAGCTTCCTGGTCGAAGTGT--TAAT
GCGAGTTCATGATTGATGGAGATTTTTATTAAAATAAATGAGGTACAACAGTCTCGTTTGTTTTCTGTCGTAGACATTTT
CCTCCACTCTCTGCGAGGCACAAGAGGCCCCATAATTGAACCGGCATGCCGGTGAGGACGTGGCACAGCCTGAACATCGT
GTATATGGTACGGGGCGATGCAAGAATATCGGTTTTTATAGGACGTGCATTTCCAGATTTTCTTACAAAAACCCCTATTT
ATACCAGATAAAAGG---AATTAAAGGGTTTTTGTAAACATGGCTGCAATGCACCATCGATGAACAGCAAAATTAAAAAC
CAAACGATCAAAAAAGTCTGACACTTTGTGCCTTCAAAGATGCACAAATTATTT-AGTTGCTTGAGTTTTATATGTTCGA
ATGACATCTGTGGAACTTCTGATAAAAAATCAAATTAGTGCTCAAACTTTTGAGCACTCATTTTGTTTTCATTTTGTCAG
GAGCCCCTTG-----GATCTTATTTCGCCTTCAAATTTTGTAAGCACCTAAAACATTTGTGCATCTTCAAATCCAGTAAG
TTTCATAAAAA--TG----CATTTTGTTTG-ATTTTACTGTTCAACATGGGTGCAATGCAACCAGCTTCAGCTACAACTT
CCCCATTGATGGTGCCAACAGGCAATAAACTGTAGTTCTC-AC-ATATTTATGGCAACCTCATCTTTCTTAAGACCTACT
TTGCTCG-------------------------------TTATATCCTCGTCATACCGCAGTTCATGAATTAGGATTCAGA
AGTCAGAACGAATTACATTGTTGAGGGATATTCTGTTATGCACATTGGATGCCTGCTAGTCAGGTTAGTTTATCAAACTA
AAGGAGCGCTGATGTAGATATCTAGGTTAGTG
>chr2A_466
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------------------------------------------------------------------------------CA
GTTCAATCAATTACACTCGGGCACTGGGGCTCATTCGCTATTCCTT----------------------------------
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-------------------------------------------------------------GTACGAAAAATACAGTGCC
CATTCTTCGTGATGTAACTCATCAATAATCATGGCTGCCCAAGTAGTT----------------GACATGCCCAACAGTT
GACTTCACATCACTTGCATAGATGCCTCCTCATCATTTTGCACTCTACTTCACCGTCCAGCTCATCATTGGCTGTATTTA
TAGTTGCACTATTCAATTATTGTTCTATTTCTTAAGATTAGATACATGATACTCAAGTACACCTTTGTGTAAAAATGAAT
TCACTTATCATGGGCACATGTTCCCGGCTGCTTTGCCGCC-GGGTCCTTTCCAGTTTGCCTATATAAAGGGTTCGAGGCA
GAGCGTATACAGATAGAGTCAATGCACGCACATCTGTCCTATACATCCTAGTACAAACCATGGCCATCAGGCACACCATG
CAGCTCCTACCGGCCTTCATCTTCGCCCTAGCCCTAGTCCTTATGGCGTCAGCTGCGGCAACGGAGACGATCCACCTCAA
GTTCTACATGCATGACATCGTCACCGGCGGGCCATCGAGTCCAGCAACAGCGGTGCAAGTCATCAAAGGTGTGGTGCCGC
TGGCCAACGACCCCACCACCTACTTCGGCGACATGTACGTCATCGACGACCTGCTGACGGAGGGCCCAGACGCGGCGTCC
CCCGCCGTCGGCAGGGCACAGGGGTTCTTCCAGTTCGCGTCGATGACAGAGTACGCGCTGCTGCTCACTGCCAATTTCGT
GTTCACGGCAGGGAGTCAAAACGGCAGCTCCGTGGCCGTACTCTCCAGGGACGTCATCTTCGACAGTGTCAGGGAGTTGC
CGATCGTAGGCGGCACTGGCGGCCTCCGTGGTGCGACTGGGTACGGTCTGCTCCGGACACACTCGGTCAACACCACCACC
AGGAACGCGGTGCTCACGATTGATATGTACCTCCGCGTGTAGGTGCATGCAGACCCTAGGTCTGAACTTACTTTCATGCA
TCTGGTGGGTGCTTGCATAAAAGAAGCATCTACGATTAATTTGTGTCATTGTGTGTGTGTGTGTGTGT------------
------CATGGTCCGGAATGTCTTCAGCATGTCAGTGCGTCCGATTTATTTGTGTAGCTTCCAGGTGTAAGTGTTATAAT
GTGAGTTCATGATTGATGGGGATTTTTATTAAAATAAATGAGGTACAACAGTCTCGTTTGTTTACTGTGGTTGAAATCTT
CGATGT------------------------------------GGCGTGCTGGTGAGGATGTGTCACAGCTGGAATATGGT
GTATATGGTACGGGGCGATGCAAGAATATCGGTTTTTATAGGATGTGCATTTCCACATTTTCTTACAAAACCCCCTATCT
ATGCGAGATAAAAGG---AATTAAAGGGTTTTTGTAAACATGGGTGCATTGTGACAAAAATCAAG---------------
------------AAAGTCTGACACTTTGTGCCTTCAAAAATGCACAAATTTATATAGGTGGTTCAGTTTTATGTGTTGGA
ACGACATCTGTGGAGCTTGTGAC-AAAAATAAAATTACTGCTCAAACATTTGAGCACTCATTTTGTTTTCTTTTTGTCAG
GAGCCCCTCAGCTCAGATATCATTTCGCCTTCGAATTTTGCAAGCACCAAAAACATTTGCGCATCTTTATATCCAGTAAC
TTTCATAATAAAACAAAAACATTTTGTCCG-ATTTCAGTGTTGAAGCTGCGTGCAATGCACCCAGGTTCAGCTACAACTT
CTCCATTAATGGTGCCACCAGGCAATAAAATGGAGTTCTACGCAATATTTGTGGCAACCTCATATTTCTTAAGACCTACT
AGTCCTCTGTTTTTTTAACCAAGATAGTTTGCACGTTATTATATCCTCCTCATAGCG----TCATGAATTAGGATTCAGA
AGTCAGAACGAATTACATTGTTGAGGGATATTTTGTTACGCACATCGGATACTTATTAGTCAGGTTAATTTATCAAACTA
AAGGAGAGCTGACGTAGATATCTAGGTTAGT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------S---S----------
--------S------S--S------------------------S-----------------S------S-----------
-------------------------------------------------------------S-S-------------SSS
------------S------------------------------S-------------------------S---S-SSSS-
--------S-------------S---------------------------------------S------------S----
-------------S------------------------------------------------------------------
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-------S----------------------------------------SSSSSSSSSSSSSSSS----------------
----------------------------------------------------------------------------S-S-
--------------------------S-----------------------------------------------------
-------S--------------------------------S----------------S--------------S-------
----------S----------S-----------S-----S----------------------------------------
-----------------S--------S----------------------------SS-----------------------
-------------------S-------------S----S------------S----------------------------
--------------------S-------S---------------------------------------------------
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------------------------------------------------------------------------------S-
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-------------------------------------------------------------------S--S--S------
----S-----------------S-------S-------------------------------------SSSSSSSSSSSS
SSSSSS-------S-----------------------------------S-------S----------------------
---------------------------S-----------------------------------S-----S----------
----------S--S----S-----------S--SS-----SSSSS-S-S-------------------------------
------S---------S----------S--------------------------------S-----------S--S-S--
---------------SSS----------S-----S----------------------S---------S------------
---------------S---S---S---------------S--------------S----------S----S-----S---
---S----------S----------------------------S--------S-----------------S---------
-----------S----------------------------------------------S----------------S----
-----------------------------SS-----S-------S------------------------S----S-----
---------------S-------------------------------S-----------------S--------------
----S----------------------------------------------S-----S----------------------
-------------------------------------------------S------------------------------
-----S--------------------------
>forward_398
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----------------------------------------------------------CTTCTCAGCGGCTCAGCATA--
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>reverse_2087
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------AGTACGGGGCAATGCAAGAA------------------------------------------------------
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