>input_sequence_80409
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----------------------------------------------ATGGGCCGTTGGTTGAAGCCAGATGTACGTGCAA
GACCGTTCG-----------------------------------------------------------------------
--------------------------ATTACTTCAGAGTTATTTTTGTATCTTGCC--------TTAACGATCCTGGTGG
TGGTGCAGGTTTACCCGCTGATCGGCGCCATGTCGCTGGTGACGGGGATGTGCATCTTCCAGCTCACCCGGAACGTCTTC
CTCAACCCGGACGTCAGGTGAGGCCTCCAAGCCGCCCCGATCGATCGATCGGATCATTTCGAATTTCGATGCATGCATGT
GGTTAACCGTTTTGCTCTCTT-----GCTTTGTTCAGGGTGAGCAAGAGCAACCGGCAGAGCGCGGTGCCGGAGAACGAG
GAGGAGGGCGAGAGGTACAGCCAGCACGCCTTCCGCCGCTTCGTCAGCGCGCACCGCCCGGAGGTCTTCCCCGCCATCAA
CCGCTTCTTCTCTGGGTTCAGCGCCAAGTGA-------------------------------------------------
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>chr2A_1_TraesCS2A01G174600
TGTCTAGACAGGTGGTGGAGTGGTTTCCACCACCTTCTAGATTGGGGGGAAACTGGGTCCGAAAATAGAGAGAAATTGGG
TTTCCACCTCCTGGCCTTTTTTTTGGTTGCATCTATACCAATATAAAAAGATCCAAATGGGCAGATCCAAACCATCCCGA
CCATCAAATCATGTTATCTAACGGTTCAAATCGCTCCAATGTTGAGCACCAAACACGTTTAACGCTCTAATTACCCATCA
CTGGCATTGGTTATAAACATATTTTGACTCAACGCTATCCCTTGAAATCTGGCATGTAATTAATATCCTATCATTTCCAT
GTAAAAATAATTGATATCTTACCAAATACCATCGTGCAACAGATATATCTTACCTAATATAAATGTGCATTATACGTACA
TTATTACTAGTCAACGTAAATTTCACGCCACGCCGTAATGCC-GTATCAATGTATCATTAATGTTCAAAACCAGATTCGC
TCCCATGGTTTCAGAGATCCAGGCGTATCTATCTGTATCCTCGTCTCCACCGAATGCGAGGAAGACGCCAGTTTTGACTA
TGGAAATGCTACGCACGTACGTACGTGCCCATCGACCGAAACGAAAGAGATACGATGACGACGCATAGGCAGTGCGGCAA
CGTTGACCCGGCCTGGCATCGGCCGCGGGAGAGAGGCGGGCGGGCTGACCTGACACGGGAACTGTTCAACCTTTGACGAA
CGAGCTCCAAAAACCGCAGGCCGCTCATGGTTTCTCGATAGATCCCGCGCTCGCCCACAGAAATCGGTCGTCCGAGGCGT
CGTCGCAGCCCCCTCTCCTCGCTGGACGCCGCCCCACGTACGCACGGCATGTAT-GTATGTATGTATATATATCTCTGCA
TACAAACAACGGGCAAACCATTGGCCGGGAAGAAGAACACGAGGGAAAAGAAGATAGCAGCAGCGTCTTT---CATCAGA
GTTTAGATC-ATCGCAGAGCGCAACGCTAGGCCAGGCGACGACGACATGGGCCGTTGGTTGAAGCCAGATGTACGTGCAA
GACCGTTCG-----------------------------------------------------------------------
--------------------------ATTACTTCAGAGTTATTTTTGTATCTTGCC--------TTAACGATCCTGGTGG
TGGTGCAGGTTTACCCGCTGATCGGCGCCATGTCGCTGGTGACGGGGATGTGCATCTTCCAGCTCACCCGGAACGTCTTC
CTCAACCCGGACGTCAGGTGAGGCCTCCAAGCCGCCCCGATCGATCGATCGGATCATTTCGAATTTCGATGCATGCATGT
GGTTAACCGTTTTGCTCTCTT-----GCTTTGTTCAGGGTGAGCAAGAGCAACCGGCAGAGCGCGGTGCCGGAGAACGAG
GAGGAGGGCGAGAGGTACAGCCAGCACGCCTTCCGCCGCTTCGTCAGCGCGCACCGCCCGGAGGTCTTCCCCGCCATCAA
CCGCTTCTTCTCTGGGTTCAGCGCCAAGTGATGTGTC--------------------------CATTGCATGTGTGTGTA
CGTGTGTCGCGTGTGAATATGTTGGTTCGTGATTGTGTCATTAGCGTGGAGGCATGCCATGGATATGTGCTCCTAGACAC
GCCTCAGGTGAATAAATGGTGTGTTGGAAATATAAGAGCAGCTCTAGAAGAGTT------GCCATAATTTGAATCGTGGT
CCGCTGGCTATATGGACTGCGTTTCATAATAATTTGAATTTGAAGGCTGTCGGCTTGTGCGCAAATACAAAATCACCAAA
CGGCATTT---------TTTTTATCTGCTCTCCTGATTTTAGTTTCAATTCAAGTAGCAATTTTCTTTTGCAGCCAAACA
GCTCATAATTGTCACCAAATGCGATAGACATAATTAGCAACTACTATATGTTAGTGGCCAAAAGTCGTATTATTACATAT
ATTTTTACGACTTGAAATATCGTTAAGCGGCATTTTCAAAATATACAATGCCCCTAATCGACATTGCAAACTACTACTAC
CTTCACTACGCCGTTTCCACCGCCGCCTAGTCATTGTCCTCCTCATCGGTACACAGTCAAACGTAGTCTGAGAGATCTCG
CCTCCCGTGTCGCTCTCACGGGCGGCTCGGGATAAACCCCAGCCGCCGCCGACAGCCACCCTCGCCTCCCCCCTCCTCCT
CCCGCCGCCGCCGGAGGGCGTCCCCGGGCAAGACGGCTCTCCCTCCTCTTCTCCAGGCGTGGCGGCGCGGGACGCTGGCC
GGCGACGGGGACTCGCGGGCGGTCGGGGGCGCGCACCGGCAATGGTGGCGCAGTGCGCCGGCGCGAGCGGCGCGGAGGTG
TGGGCAGCTGGGTCTCCAAGGATCCGACGCCGCTCTGCCCAGGGGAGCTCCAGATTCCGCTCCCTTCGAACAGCGGCCCG
TTCCCTTGGCCGGCGGTCCCTGCGGCCGCGACTGGGGGCTGGTGGCGTAGGCGGGTGTGGTGGTCAGCGCAGCGTGGTGA
GCAGGCCATGGCGGTGCCTGGTGACTGCCATG
>chr2B_414
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-------------ACGTAAATATCACGCCACGCCGTATCAAATGTATCAATGTATCA-TAATGTTCAAAACCAGATTTGC
TCCCATGGTTTCAGAGATCCAGGC----CTATCTGTATTCTCGTCCCCATCGAATGCCAGGAAAACGCCAGTTTTGACTA
TGGAAATGCTACGTACGAACGTACGTGCCCATCGACCGAAACGAAAGAGATACGATGACGACGCATAGGTAGTGCGGCAA
CGTTGACCCGGCCTGGAATCGGCCGCGGGAGAGAAGCGGGCGGGCTGACCTGACACGGGAACTGTTCAACCTTTGACGAG
CGAGCTCCAAAAACAGCAGGCGGCTCATGGTTTCTCGATATATCCCGGGCTCGCCCACAGAAATCGGTCTTCCGAGACGT
CGTCGCAGCCT---------GCTGGGCACCGCCCCATGTACGCATGGTGTTGGCG---TGTATGTATATATATCTCTGCA
TACAG----CGGGCAAACCATTGGCCGGGAAGAAGAACACAGGAGAAAAGGTGATAGCAGCAGTGTCTTC---CA---GA
GTTTAGATC-ATCGCGAAGCGCAACGCTAGGCCAGGCGA---CGACATGGGCCGTTGGTTGAAGCCAGATGTACGTGCAA
GATCGTTTTACTCACATGAAATTTTGTCATGGTTCTTGTGAATTTGGTGTGCTCTGTTTTTGTATGCACATTTTTGCCTT
GTCAATAATTAGTG-----CTATAGTATTGCTTCAGCATG-TTTTTGTATCTTGCATGCGTTAATTAACAAAATTC-TGG
TGCTGCAGGTTTACCCGCTGATCGGCGCGATGTCGCTGGTGACGGGGATGTGCGTCTTCCAGCTCACCCGGAACGTCTTC
CTCAACCCAGACGTCAGGTGAGGTCTCCAAGCTACCCCGATCGATCGGATC-----------ATTTCGATGCATGCATAT
GGTTAACTGTTTTGCTCTCTT-----GTTT-----AGGGTGAGCAAGAGCAACCGGCAGAGCGCGGTGCTGGAGAACGCG
GAGGAGGGCGAGAGGTACAGCCAGCACGCCTTCCGCCGCTTCGTCAGCGCGCACCGCCCGGAGGTCTTCCCCGCCATCAA
CCGCTTCTTCTCAGGGTTCGCCGGCAAGTGATG-----------------------------------------------
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>chr2D_458
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----------------------------------------------------------TAATGTTCAAAACCAGATTTGC
TCCCATGGTTTCAGCGATCCAGGC----CTATCTGTATTCTCGTCTTCATCGAATGCCAGGAAGACGCCAGTTTTGACTA
TGGAAATGCGACGTACGTACGTACGTACCCATCGACCGAAACGAAAGAGATACGATGACGACGCATAGGTAGTGCGACAA
CGTTGACCCGGCTTGCCATCGGCCGCGGGAGAGAGGCGGGCGGGCTGACCTGACACGGGAACTGTTCAACCTTTGACGAG
CGAGCTCCAAAAACAGCAGGCCGCTCATGGTTTCTCGATAGATCCCGGGGTCGCCCACAGAAATCCGTCTCCCGAGACGC
CGTCGCAGCCT---------GCTGATCCTGCTCGATCGCCTCGCTGGACACTCACGTATGTATGTATATATATCTCTGGA
TACAAT----GGGCAAACCATTGGCAGGGAAGAGGAAAG-------------------AGCAGCGTCTTTCATCA---GA
GTTTAGATCAATCGCGAAGCGCAACGCTAGGCCAGGCGA---CGACATGGGCCGTTGGTTGAAGCCAGATGTACGTGCAA
GATCGTTTTACTGATATGCAATTTTGTC-----------------------------------ATGCACAGTTTTGCCTT
GTTAATTAGTACGAGTACTCTATAGTATTGCTTCAGGATG-TTTTTGTATCTTGCACGCGTTGATTAAAGATCCTGGC--
-GCTGCAGGTTTACCCGCTGATCGGCGCGATGTCGCTGGTGACGGGGATGTGCGTCTTCCAGCTCACCCGGAACGTCTTC
CTCAACCCAGACGTCAGGTGAGGCCTCCAAGCCACCCCGATCG-TCGATCGGATCAC-------TTCGATGCATGCATGT
GGTTAACTCTTTTGCTCTCTTGTTTTGTTT-----AGGGTGAGCAAGAGCAACCGGCAGAGCGCGGTGCTGGAGAACGCG
GAGGAGGGCGAGAGGTACAGCCAGCACGCCTTCCGCCGCTTCGTCAGCGCGCACCGCCCGGAGGTCTTCCCTGCCATCAA
CCGCTTCTTCTCAGGGTTCAGCGCCAAGTGATGATGGGTTCCATCGAACCGGCCGGCCGGGTGCAGTGCTTCTGTGTGTA
CGTGTGTCGCGTGTGGATATGTTA----GTGATTGTGTCATTAGCGTGGAGGCGTCCCATGGATATGTACC---AGACAT
GCCTCAAGTGAATAAATGGTTTGGGC-AAATATAAGAGCAACTCTAGAAGAGCTGAACAAGCCATAATTTGAATCGTGAC
CCGCTGGCTATATGGAGTGCGCTTCATAATACTTTGAAGGCTGACAGGCCTCTGCGCA----AAATACAAAATCGCCGAA
CGGCAGCCATCATCGTCTTTTTATTTGCTCTCATGATTTTAGTTTCAATTCAAGCAGCAATTTTCTTTTGCAGCCAAACA
GTTCATAATTGTCATCAAACACGATAGACATAATTAGCAACTACTATATGCTATTGGCCAAAAATCGTCGCATTACATAT
ATTTTACGACTTTGAAATATCGTTAAGCGGCATTTTCAAAATATACAATGTCCCTAATCGACATCGCAAACTACTACTAC
CTCCGCTACGCCGTCTCCACCGCCGCCTAGTTGTTGTCCTCCTCATC---------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS--------S---------------SSSSS---------------S-------------------S--
------------------------SSSS----------S----------S-------S----------------------
-------------S-------------------------------------------------------S----------
-------------------------------------------------------------------------------S
--------------S--------------------------------S---------------------S------S---
----------SSSSSSSSSS-----S-S----------------S--SS-S-SS--------------------------
-----SSSS-------------------------------SS-S------SS-----------------------SSS--
---------------SS----------------------SSS--------------------------------------
--S----SS-----------------------------------------------------------------------
-----------------------------S------SS-SS--------------S------------------------
--S-------------------------S------------------------S--------------------------
--------S------------------------S----------------------SSSSSS------------------
-------S-------------------S--SSSSS----------------------------------S--------S-
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------------S--------------------SSSS----------------------------S---S-S--------
---------------S-------SSSSS-------------------------S-S------------S-SSSS-----S
------S-------------S--SSSS-------------S-----------S-------------------------SS
----------------S----S---------S------SSSSS-SSSSSSSSSSSSSSSSSS------------S--S--
-----SSS----------------S-------S---------------------S-------------------------
-S------------S----SS-----------------------------S--S---------S----SSS---------
-----SSSSSS---------------------------------------S-------------S---------------
--S-S---------S----------------SS--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_157
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---------------------------------------------------------TGGGCAGATCCAAACCATCC---
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>reverse_2276
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-----------------------------------GCTCTCCCTCCTCTTCTCCA-------------------------
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