>input_sequence_80408
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-----------------------------------------ATGGAGCAGGG------CACGACGACGGCGCCGACGCCG
CTACCGGAAGTCGCCAAGGGGACAGGCCAGTGCTTCACCTTTGTTGCCACCGGAGGCTCCGCCTTCTACTTCCTCAAGGG
CCTGCGCAACTCCCCCAAAGGCCGCCGCCTAGCCGGCGGCGCCCAGGCGGTCCTCACGAACGCGCCCCGAATCGGCCGTT
GGGGGGTCTGGCTCGGCGTCGAGGCAGCAATTGATAACGTCCTGGAGCGCGTGAACAAGAAGGACCACCGCTTCAACGCC
ATGATCTCCTTTGGCGCCGCCAGCGCCCTCGTCTCCATGGCCAGGGGGCCACGCGCCGCCGCCCTCTCCGGGATCAAGGG
CGCGGTCTTCGGCGGGCTCGCTGAGATCGTTATGCGCAGGCTTAAAAGCTTGGTGGCCGACCTACCGGAACGGGAGAAGT
GA------------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G086800
GCCCACAGTGGATAACAAATGTATTTTTGAGCACCACTTATATTTTTTTAGGGGAATAACTTGTATCTATTTAACCACGA
AGCATGTGGAATTTAAACGAGCTGCAGATACTGCGGCCCATTTTACACCAGTTCGATTTTTTCGTTTATATTATAGAAAG
TATGTAAATTAGAATCTCAGTACCAAAATAAAAGTTTGAATATTTGTGTGCATAAATATTACATACAAACGAAATAAATT
ATTTTTAAAAAAATGACGTATTATTTAGAAAATAAATATATATTTAAAACAATATTTGTGAGTTACAAAAATATTGTATG
ATTTAAAATAAAAAATAATATTTTTTAGAATTACAATTAAAAATATAGTTATACAAACATTTTAACCATTCACACGTTTG
TATAGTTAATTTAAACCTTAAACTGTTGATATTAATATTAATATTTAATAATTTAAATATAATCCACAGTATAGGTAGCC
CATTTAAGTTCCACATGCATGCACTTTGAGTAGCTATAATGTCCTTATCCGAAGTAAGCATCATAGTGTGATTGGCTCGA
TGGCTAGCCGGCTTGCATGCAAGTTGCTCATCATGTTTTCGATACTGTGGGGCCACTCTTTTTGTTTACTTTTCACTCTC
TCCCAACAGGCGCGACCCACTGGTCCACGTCAACTTATATATAATATATATTTCGAGGGTGTTTCTGAAAAAAAAACTCC
CAGTCCAGTGACTGACAATGGGCCCCACGTGTCTAGTCAGCATTGATTCCACCTACACGCGAGATAAACATTGTATTTGC
ACGTCAAAGTCAAGTTTTTGCACCATTTCAATGTATGCCATAACTTATAGCATTAAAGTGACCGTCTCCGACAAGTTCTA
GCACCATCACTGTAATTGACTCTTATAGTAATAGGTCACCCGATCTCCCGTCGTCGCCAACTTGTAACTCAAGCCGCAGG
CCACCACCGCCACGCCACTTCCAC-ACACCGCCGGAAACCGATGGAGCAGGG------CACGACGACGGCGCCGACGCCG
CTACCGGAAGTCGCCAAGGGGACAGGCCAGTGCTTCACCTTTGTTGCCACCGGAGGCTCCGCCTTCTACTTCCTCAAGGG
CCTGCGCAACTCCCCCAAAGGCCGCCGCCTAGCCGGCGGCGCCCAGGCGGTCCTCACGAACGCGCCCCGAATCGGCCGTT
GGGGGGTCTGGCTCGGCGTCGAGGCAGCAATTGATAACGTCCTGGAGCGCGTGAACAAGAAGGACCACCGCTTCAACGCC
ATGATCTCCTTTGGCGCCGCCAGCGCCCTCGTCTCCATGGCCAGGGGGCCACGCGCCGCCGCCCTCTCCGGGATCAAGGG
CGCGGTCTTCGGCGGGCTCGCTGAGATCGTTATGCGCAGGCTTAAAAGCTTGGTGGCCGACCTACCGGAACGGGAGAAGT
GATCACTGATGCCCTGAGGGTTTTTTGGGCCGCTTTTCCGATCGAGCTTGCCTATTAAAC-TTTTATTACTGCTTGTACT
TTGAAAGTCTGAATATTACTAAAATTGAGGTGCTGTACGTAATTTTTGTTAGTACGCATCA------C---ATACATGGA
TCGTTC-TTTGTTTCTTGAGCCGTTGTTCCCGTTGTTATACTCTTGACTGTCGTC---------------------AAGA
TGCGAGTGCGATCATCGTGAAATCTAGATCCCTGTCCAAAGACACGACATGTTAGCTGCACAGAGCTCTACCGAAACGCG
CAACGAGGAGCAATGACGTAGGAGCTCGGCGCCATCCTCTCCACCCTGCTCCTT----CTCAGCACCGAAGCCTTCATTG
AACTTCCATGGAATTA---GCATTGACTTC--------------------------------------------------
----------------------------------------TATACACGACCCACACCAGATGCAAATATTTGCCCAAAGC
CATCGTTTT-AGTTGTTTGGCGCACGGAAGAAGTGGCCGTAAT---------GCCAGGCATC----AGCATGTGCACACA
--------TGCATGATCCACACACCGCACAATCAGCAAAAACTAGCACCTCGATGTCGAGGGCATCTGCCAAACGCAGTT
CCCTAATGGCTTTGAGAAGGTCTGCCGGCAACTTCAGCCGGTAGTCGTGCCAATGTTTCTACAATGAGACTCTTAACATG
TCACATCTGAACTTTGGTGTCATTACCCTGATCCTTGGTTGAGGCAACGGATATTCGACACTTTAGACCGATCACGGTGA
TTAATGTGATCCAGCGGATACTTTCTAAGGTGTGTGTGGCGTCGTGGTTTGCCCCGGTGGTGGAACGCGTTTCTCGCCCC
TATCAATTCACTTTTCTAAAAGGTCGTCATATTCATGGTGGGATTCTGGT--------------------------TCTT
CATGGGATTTGGTCATGAGGTTAAGTAAAGGCGTG----TTAAGTTAGACTTTCAAAAGGCATACGATCACATTAACGGG
CCCTTTCTTCTTTTAGTTTTTGAGCGAAGGGGGTTTGAGGAAGGCTGGTGCTCGTGGATCATG
>chr2B_911
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------------------------------ATAGGTCACGCGATATCTCGTCGTCGCCAACTTATAACTCAAGCCGCCGG
CCACCACCGCCACGCCACTTCCA-TACACCGCCGGAAACCGATGGAGCAGGG------CACCAACACGGCGCCGGCGCCG
CTACCGCAAGTCGCCAAGGAGACAGGCCATGGCATCGCCGTTATCGCCGCTGGAGGCTCCGCCTTCTACTTCCTCAAGGG
CCTGCGCAACTCCCCCAAAGGCGGCCGCCTAGCCGCCGCCGCCCAGGCGGTCCGCACAAACGCGTCCCGAATCGGCGGCT
GGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAACAAGAAGGACGACCGCTTCAACACC
ATGATCTCCTGTGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGTCCACGCGCCGCCGCCCTCTCCGGGATCAAGGG
CGCCGTCTTCGGTGGGCTCGCAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTACCGGAACCGGAGAAGT
GATCAATGGTGCTGTGAGGGTTTTTCCGGCTGCTTTTCCGATCGAGCTTGCCCACTAAAC-TTTTATTACTGCTTGTACT
CTGAAAGTCTGAATGTTACTAAAATTTAGGCGCTGTACGTAATTTTTGTTAATACGCATTACTACATCTACATACATGGA
TCGTTTTTTTGTTTCTTGAGCCGTTGTTCCCGTTGTT-----------------C---------------------AAGA
TGCGAGTGCGATCATAGTATAATCTAGAGCCC------------------------------------------------
-AACGAGGAG--ATGATGTAGGAGCTCGGCGGCATCATCTTCAGTCTCCACCGTACTCCTCAGCACCGAAGCCTTCTTTG
AACTTGCATGGAATTATTACAATTGACTATGCGGATCACTGATATTCATCGGTCAATTCTTCCTCCATGTTCCTAAAAAA
GTTCACGTCCATATCAGTTATCGTTCTTGGCATAC--AGTTATACACGACCCACACCGGATGCAAATATTGGCCCAAAGC
CATCG-TTC-AGTTGTTTGGCGCATGGAAGAAGTGGCCGTACAAACCGTCAGGCCGGGCATCGATCAGCATGTGCACACA
TCCATACATGCATGATCCACACACCCCACAATCGGCAAAAACTAGCACATCCATGTCGAGGGCATCTGCCAAACACAGTT
CCCTAATGGCTTTGAGAAGGTCTGCGGGCAACTTCAGCCGGTAGTCGTGCCAATGTTTCTACAATGAGACT----ACATG
TCACATCTGAACTTTGGTGTCATTACCCTGATCCTTGGTTGAGGCAACGGATATTCGACACTTTAGACCGATCACGGTGA
TTAAAGTGATCTAGCGGATTCTTTTGAAGGTGTGTGTGGCT---TGGTTTGCCCCGGTGGTGGAACACCTTTCTCGCCCC
TATGAGTCCACTTTTCTATAAGGTCGTCATGTTCATGGTGGGATCCATGGAAAAAAAATCATGGTGGGATTCTGGCTCTT
CGTGAGATTTGATCATGAGGTTACATAAAGGCGTATTCCTTAAGTTAGACTTCGAAAAGCCATACAATCACATTAATGAA
TCCTTCCTTCATTTAGTTTTTTAGTGGAGGGGGTTTGAGGAAGGCTGGTGCTCGTGGATCATG
>chr2A_922
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-----------------------------------------GATATCCCGTCGTCGCCAAGTTGTCACTCAAGCCGCAGG
CCACCACCGCGACGCCACTTCCACTACACCGGCGGAAACCGATGGAGCAGGGCACGAGCACGACGACGGCGCCGACGCCG
CTACCGGAACTCGCCAAGGAGACAGGCAATTGCATCGCCGTTGTCGCCGCTGGAGGCTCCGCCTTCTACTTCCTCAAGGG
CCTGCGCAACTCCCCCAAAGGCGGCCGCCTGGCCGGCGCCGCCCAGGCGGTCCGCACAAACGCGCCCCGGATCGGTGGGT
GGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAAC---AAGGACGACCGCTTCAACACC
ATGATCTCATGTGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGGCCACGCGCCGCCGCCCTCGCCGGGATCAAGGG
CGCCATCTTCGGTGGGCTCGCAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTACCGGAACCGGAGAAGT
GATCGTTGGTGCCGTGAGGGTTTCTCGGTCTGCTTTTCCGGTCGAGCTTGCCTATTGAACTTTTTGTTACGGCTTGTACT
CTGAAAGTCTGAATATCACTAAAATTTAGGGGCTGTATGTAATTTTTGTTAGTACGCATTA------CTATATACATGGA
TCGTTC-TTTGTTTCTTGAGCCGTTGTTCCCGTTGTT-----------------CTACTCTTGACTGTT----GTCAAGA
TGCGAGTGCGATCATCGTGAAATCTAGA----------------------------------------------------
-------------------------TCGGCGCCATCCTCTCCACCCTGCTCCTT----CTCAGCACCGAAGCCTACATTG
AACTTCCATGGAACTA---GAATTGACT----------------------------------------------------
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>chr2D_922
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-----------------------------------------GATATCCCGTCGTCGCCAAGTTATCACTCAAGCCGCAGG
CCACCACCGCCACGCCACTTCCGC-ACACCGCCGGAAACCGATGGAGCAGGG------CACGACGACGGCGCCGACGCCG
CTACCGGAACTCGCCAAGGAGACAGGCAATTGCATCGCCGTTGTCGCCGCTGGAGGCTGCGCCTTCTACTTCCTCAAGGG
CCTGCGCAACTCCCCCACAGGTGGCCGCCTAGCCGGCGCCGCCCAGGCGGTCCGCGCAAACGCGCCGCGAATCGGCGGCT
GGGGGGTCTGGCTCGGCGCCCAGGCAGCAATTGACAGCGCCCTGGAGCGCGTGAAC---AAGGACGACCGCTTCAACACC
ATGATCTCATATGGCGCCGCCAGCGCCCTCGTCTCCGTGCTCCGGGGGCCACGCGCCGCCGCCTTCTCCGGGATCAAGGG
CGCCGTCTTCGGTGGGCTCGTAGAGATCGCTATACGCGGCCTTAAACGCTTCGAGGCCGACCTACCGGAACCGGAGAAGT
GATCAATGGTGCCCTGAGGGTTTTTCCGGCTGCCTTTCCGATCGAGCTTGCCTATTGAACTTTTTGTTACTGCTTGTACT
CTGAAAGTCTGAATGTTACTAAAATCTAGTCGCTGTACGTAATTTTTGTTAGTACGCATTA------CTACATACATGGA
TCGTTC-TTTGTTTCTTGAGCTGTTGTTCCCGTTGTT-----------------CTACTCGTGACTCTCATCAGTCAAGA
TGCGAGTGCGATCATCGTATAATCTAGAGCCC------------------------------------------------
-AACGAGGAG--ATGATGTAGGAGCTCGGCGGCATCATCTCCAGTCTCCACCGTACTCCTCAGCATCGAAGCCTTCTTTG
AACTTCCATGGAATTATTAGAATTGACTATGCGGATCACTGATATTCATCGGTCAATTCTTCCTCCATGTTCCTAAAAAA
GTTCACGTCCAGATCAGTTGTCGTTCTTGGCATATATAGTTATACACGATCCACACCGGATGCAAATATTGGCCCAAAGC
CATCG-TTCTAGTTGTTTGGCGCACGGAAGAAGTGGCCGTACAAACCGTCAGGCCGGGCATC----AGCATGTGCACACA
GCCACACATGCATGATCTACACACCGCACAATCGGCAAAAACTAGCACATCGATGTCGAGGGCATCTGCCAAACGCAGTT
CCCTAATGGCTTTGAGAAGGTCTGCCGGCAACTTCAGCCGGCAGTCGTGCCAATGTTTCTACTATGAGACTCTTAACATG
TCACATCTGAACTTTGGTGTCATTACCCTGATCCTTGGTTGAGGCAACGGATATTCGACACTTTAGACCGATCACGGTGA
TTAAAGTGATCTAGCGGATTCTTTCGAAGGTGTGTGTGGCT---TGGTTTGCCCCGGTGGTGGAACACCTTTCTCGCCCC
TATCAGTCCACTTTTCTAAAAGGTCGTCATATTCATGGTGGGAT------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----S-----------------------------------
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-------------------S---------S---S--S--S----S---S-S-----------------------------
----------------------S---------------S--------------S---S------------------S-S-
------------------S-S-------------S-S--S-------------------------S-----------S--
----------S-------------------------S--SS-S-------------------------------------
---S--------S--------S-------S---S---S-S------S----S-S-----------------S--------
-----S--S----------------S----S-------------------------------------------------
S-------------------------S---S----------------------------S--------------------
-------------------------------------SSSSSSSSSSSSSSSSS--------------------------
----------------------------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---------SS----S---------------------------------------------------------------
--------------------S-------SS--------------------------------------------------
---------------------------------------------------------S------------S---------
-----S--S--------------------------------SS------------S------------------------
---------------------------------S--------------S-------------------------------
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----S------S-------S-----S--------------SSSS----------------------S-S-----------
-----S-S------------------------------------S-SS-S------------------------------
-S--S------S-----------SS---------S-----------------SS-----S-----S----------S-SS
S----S----S----------S--S-S------------------------------------
>forward_877
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---------------------------------------------------------GTGACCGTCTCCGACAAGTT---
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>reverse_1740
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-----------------------------------------------------------ACAGAGCTCTACCGAAACGC-
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