>input_sequence_80396
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---------------------------------------------------------------------------ATGGA
GGTACTTGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCC
CCAGTCACAAGTGTGACATGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGCAAATTGACTGGAATGACA
CACATTTGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTT
CGCGCTCTCACCACTGGAGCTGCAGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCTGACAGCAGCCATGAAGGGTGCT
CCTTCAAGCGCAGGCGTGGTGCACAGCTGCATCCTTCCCCTTTTGAGAGATCCTACTCCGCCGTGTCTCCGATACCGAGC
CAAGCTGGAGATGGCATGGACCTGAGCTAG--------------------------------------------------
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>chr1A_1_TraesCS1A01G179600
CCAACCCCTCTTCGTCCGGGCCGTTGCAATTGACTCCGCGAGAGGTTGGTGTTCCCTGGCGGAGAGAGAGAG--------
----------GGAGGGAGGGAGAGGGAGGAGAGACCGAAGGCCGCGTTGTTTTTACCTCGTCTCCTCCTCCGCCTTCGAG
CTCTACTGGTATGTATCCTCGCCTCTGCCCTCTATTACGTTCTTTTCTGCGAGGTTTTCGCCTCAGATTTTAGGGGTGTT
TCGACGAGGAGAGAGGGGAGACCGTGAGAGGTTGCTAGGAGGCGTTTGAATGCGATTTTGTCGGTCCGAATCCCTAATTG
GTGTAGGTTTTGGCGCTGTGGTGCGGTTGTTCGTGGTTTTGGTGCGAATTTATCGTGGGCGGTGCGGTAGGTGGGGGTTT
CACCGTTTAGATCTGGTAAA--TTTGTGAACCGGGGAAGGGACAGCTAGGTGTTTGGTTTACCTGCAGGATTAAAAGGGG
TAGGTGCTGACTTGTGAATTAGGTTTTGTTTGTATCTGAGAATTTTATATTGATTTTTTTTGTGGGACTTTGTGGGTTCG
TTCGTAGTTTGATGCCAGGTGGACTGTACTATCCAAATTATTCAATTATAGGTTGTGGTGTTGTGGGATTTTACTGGTTT
TGATCTGCCAAAGGGCCAACGGATTTATAGTGAATCTTGTCAGCAATGTTAGAATTCAGAAATCATAAGTGACCGAGATT
TATCTGTAGAAAATTGTGGTCGAAG---------------ATAAATCTTGCATGCAAATTTAGTGGCAATTTCGTGAGGT
TGCGCCACTTTTAATACTAGTTTTTTCTTGCGTTCGATGCAAAAGTCCTCTCAGATTTACTGCAATTTATTCTATGAACT
AGTTCAGTAATAGCAACAAGAACTGTCACCGCATGGGTCATATGCAAGTGCTTCAAAACAAAATTCTGAAGCAAATTCTT
GTTCTGGGTTGCAGAAACTCCGATCTCAGAAACCAAGAAAAGGGGGTCTGTGAAGAGGTTTCTCACGGCAGAACAATGGA
GGTACTTGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCC
CCAGTCACAAGTGTGACATGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGCAAATTGACTGGAATGACA
CACATTTGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTT
CGCGCTCTCACCACTGGAGCTGCAGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCTGACAGCAGCCATGAAGGGTGCT
CCTTCAAGCGCAGGCGTGGTGCACAGCTGCATCCTTCCCCTTTTGAGAGATCCTACTCCGCCGTGTCTCCGATACCGAGC
CAAGCTGGAGATGGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTTCCCCGGCTACCTTATGCGGATGT
CTACTCCATTTCCCCTTCTTTGACAGGATGGAAACTATAAGAGATTCCTTCTTTATAGACTTATGAAGGGATATGAGACT
CCTTAGAGGCACTAAATAATGTCTATGTAGTATCAATTCAGTTTTATGGGACCTTGTTGTAATCGTAACTTCGATTGAAC
AGCCTATTCTGAATTACTTAGTATTAATCATTTGCTATTACCGTTTAGATTATTTCTCTATAGCGCGGCGCTCTTGTTTG
CTCCAACTTTTCATTATTGTAGCTCCTTTCTTTCTTATGCTCTCTTGAGGTTCATTATCTGCTGCATTTCAGTGCATTCA
AGCTGTGCAAATTTGCTTGACATAGTTGGTGATGTAAATCCGTTGCAGATTACATTATCCTATTTCTTGGGGCGTGAACT
TACTAACTAAATTTCCTTCATAATTAGTGCTTTGCATGGCAGGTTGCTGATCAGGTCTCAGCTATTTATGGTTTGCTCTC
ATATAGCTTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAGGTTATGTTTCTAACATCTATATTGCTTCCTCCTGCTTT
GTTTT-GACTTGCTTCTTTCCTTGACTCCTTTCTGTTTTGCAGGGTGATCCAGGTGCTAACTTTTTTGAAAATATTTTGG
TCTTTATGTGATGTTCCCTTTGTTAAGTTGATTTCATTTGTTCATAGTGTTCACTTGTTTTGTATGCTTGTGCAGGTGAA
TTGGT----GTTCTTTCGCACTTCTTGGTCCATGGGAGGCAGGAGCTATGGAAGATCATTGAGATCCTTTGCAGCAGTAG
AATAGCGAGGTACCATCAAAGTCTTCGGCCGCAGAATGCTTTTCAGGTAACTGTCGGAGCGCTTGTCAGTTTATTTTGAA
GAGATACCGCAAAACTGTTTGCTGCTATCCTTATAATTAGTCTTTTCCAGTGCATTGTG---AACAGAAATCATCAGC
>chr1D_1
CCAACCCCTCTTCGTCCGGGCCGTTGCAATTGACTCCGCGAGAGGTTCCTGTTCCCTGGCGGAGAGAGAGAGAGAGAGAG
AGAGAGAGGGGCAGGGAGGGAGAGGAAGGAGAGACCGAAGGCCGCGGTGTTTTTACCTCGTCTCCTCCTCCGCCTTCGAG
CTCTACTGGTATGTATCCTCGCCTCTGCCCTCTATTACGTTG-TTCTTCCGAGGCTTTCACCTCAAATTTTAGGGGTGTT
TCGACGAGGAGAGAGGGGAGACCGTGGGAGGTTGCCAGGAGGCGTTTGAATGCGATTTTCTCGATCCGAATCCCTAATTG
GCCCAGATTTTGGCGCTGTGGTGCGGTTGTTCGTGGTTTTGGTGTGAATTTATCGTGGGTGGTGCGGTAGGTGGGGGTTT
CACCGTTTAGATCTGGTAAAA--TTGTGAGCCGGGAAAGGGGCAGCTAGGTGTTTGGTTTACCAGCAGGATTAAAAGGGG
CAGGTGCTGACTTGTGAATTAGGTTTTGTTTGTATCTGAGAATTTTATATTGTTTTTTTAAT-----CTTTTTGGATTCG
TTTGTAGTTTGATGCCAGGTGGACTGTACTATCCAAATTATTCAATTATGGGTTGTGGTGTTGTGGGATTTTACTGGCTT
TGGTCTGCCAAAGCGCCAACGGATTTATATTGAATCTTGGCAGTAATGTTAGAATTCAGAAATCATAAGTGACCGAGATT
TATCTGTAGAAAATTGTGGTCAAAGTATTGCAAATCTGTGATATGTCTTGCATGCAAATTTAGTGGCAGTTTCGTGAGGT
TGTGCCACTTTTAATACTAGTTTTTTCTTGTGTTCGATGCAAAAGTCCTCTCAGATTTACTGCAATTTATTCTATGAACT
GGTTCAGTAATAGCAACAAGAACTGTCACCGCGTGGGTCATATGCAAGTGCTTCAAAACAAAATTCTGAAGCAAATTCTT
GTTCTGGGTTGCAGAAACTCCGATCTTAGAAACCAAGAAAAGGGGGTCTGTGAAGAGGTTTCTCGCGGCAGAACAATGGA
GGTACTTGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCC
CCAGTCACAAGTGTGACAAGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGCAAACTGACTGGAATGACG
CACATTTGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTT
CCCGCTCTCACCACTGGAGCTGACGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCCGACAGCA---ATGAAGGGTGCT
CCTTCAAGCGCAGGCGTGGTGCACAGCTCCATCCTTCCCCTTTTGAGAGGTCCTACTCCGCCGTGTCTCCGATACCGAGC
CAAGCTGGAGATGGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTTCCCCGGCTACCTTATGCGGATGT
CTACTCCATTTCCCCTTCTTTGACAGGATGGAAACTATAAGAGCTTCCTTCTTTATAGACTTATGAAGGGATATGAGACT
CCTTAGAGGCACTAAATAATGTCTATGTAGTATCAATTCAGTTTCATGGGACCTTGTTGTAATCGTAACTTCGATTGAAC
AGCCTATTCTGAATTACTTAGTGTTAATCATTTGCTATTACCGTTTAGATTATTTCTCTATAGCGCGGTGCTCTTGTTTG
CTCCAACTTTTCATTATTGTAGCTCCTTTCTTTCTTATGCTCTCTTGAGGTTCACTATCTGCTGCATTTCAGTGCATTCA
AGCTGTGCAAATTTGCTTGACATAGTTGGTGATGTAAATCCGTTGCAGATTACATTATCCTATTTCTCGGGGTGTGAACT
TACTAACTAAATTCCCTTCATAATTAGTGCTTTGCATGGCAGGTTGCTGATCAGGTCTCAGCTATTTATGGTTTGCTCTC
ATATAGCTTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAGGTTATGTTTCTAACATCTATATTGCTTCCTCCTGTTTT
GTTTT-GACTTGCTTCTTTCCTTGACTCCTTTCTGTTTTGCAGGGTGATCCAGGTGCTAACTTTTTTGAAAATATTTTGG
TCTTTGTGTAATGTTCCCTTTGTTAAGTTGATTTCATTTGTTCTGAGTGTTCACTTGTTTTGTATGCTTGTGCAGGTGAA
TTGGT----GTTCTTTCGCTCTTCTTGGTCCATGGGAGGCAGGAGCTATGGAAGATCATTGAGATCCTTTGCAGCAGTGG
AATAGCAAGGTACCATCAAATTCTTCGGCCGCAGAATGCTTTTCAGGTAACTGTCGGAGCGCTTGTCAGTTTATTTTGAA
GAGAGACCGCAAAACTGTTTGCTCCTATCCTTACAATTAGTCTTTTCCAGTGCATTGTGCACAACAGAAATCATCAGC
>chr1B_1
CCAACCCCTCTTCGTCCGGGCCGTTGCAATTGACTCCGCGAGAGGTTCCTGTTCCCTGGCGGAGAGAGAGAG--------
----------GCAGGGAGGGAGAGGAAGGAGAGACCGAAGGCCGCGGTGTTTTTACCCCGTCTCTTCCTCCGCCTTCGAG
CTTTACTGGTATGTATCCTCGCCTTTGCCCTCTATTACGTTG-TTCCTCCGAGGTTTTCGCTTCAGATTTTAGGGGCGTT
TCGACGAGGAGAAAGGGGAGACCGTGAGAGGTTGCTAGGAGGCGTTTGAATGCGATTTTGTCGGTCCAAATCCCTAATTG
GCGTAGATTTTGGCGCTGTGGTGCGGTTGTTCGTGGTTTTGGTGCGAATTTATCGTGGGTGGTGCGGTAGGTGGGGGTTT
CACCGTTTAGATCTGGTAAAAATTTGTGAACCGGGAACGGGGCAGCTAGGTGTTTGGTTTACCAGCAGG-TTAAAAGGGG
TAGGTGCTGACTTGTGAATTAGGTTTTGTTTGTATCTGAGAATTTTATATTG-TTTTTTAAT-----CCTTTTGGATTCG
TTTGTAGTTTGGTGCCAGGTGGACTGTACTATCCAAATTATTCAATTA--GGTTGTGGTGTTGTGGGATTTTACTGGCTT
TGGTCTGCCAAAGCGCCAACGGATTTATAGTGAATCTTGTCAGTAATGTTAGAATTCAGAAATCATAAGTAACCGAGATT
TATCTGTAGAAAATTGTGGTCAAAGTATTGCAAATCTGTGATAAATCTTGCATGTAAATTTAGTGGCAATTTCGTGAGGT
TGCGCCACTTTTAATACTAGTTTTTTCTTGTGTTCGATGCAAAAGTACTCTCAGATTTACTGCAATTTATTCTAGGAA-T
GGTTCGGTAATAGCAGCAAGAACTGTCACCGCGTGGGTCATATGCAAGTGCTTCAAAACAAAATTCTGAAGCAAATTCTT
GTTCTGGGTTGCAGAAACTCCGATCTCAGAAACCAAGAAAAGGGGATCTGTGAAGAGGTTTCTCGCGGCAGAACAATGGA
GGTACTTGGCAAATCTGTGATTGCTGAGCCCAGCAATGTGATTTTCTTGTCCACTATTCTGAACACAGAAGGGGAAATCC
CCAGTCACAAGTGTGACAAGAGGTGCCAGAATGAGCACATCTTTGGAAACATGTACCGCTGTAAACTGACTGGAATGACA
CATATTTGTGACAAAAACTGTAACCAGAGGATCCTCTATGACAACCACAACTCGCTTTGCCGAGTGAGTGGGCAGTTGTT
CCCGCTCTCGCCACTGGAGCTGCAGGCAGTGAGGGGGATTCGGAGGAAGCATGAAGCTGACAGC---CATGAAGGGTGCT
CCTTCAAGCGCAGGCGTGGTGCACAGCTGCATCCTTCCCCTTTTGAGAGGTCCTACTCCGCCGTGTCTCCGATACCGAGC
CAAGCTGGAGATGGCATGGACCTGAGCTAGAGCTAACGAGACTTCCATCTTTTCTTGCCCCGGCTACCTTATGCGGATGT
CTACTCCATTTCCCCTTCTTTGACACGATGGAAACTATAAGAGCTTCCTTCTTTATAGACTTATGAAGGGATATGAGACT
CCTTAGAGGCACTAAATAATGTCTATGTAGTATCAATTCAGTTTCATGGGACCTTGTTGTAATCGTAACTTCGATTGAAC
AGCCTATTCTGAATTACTTAGTGTTAATCATTTGCTATTACCGTTTAGATTATTTCTCTATAGTGCGGTGCTCTTGTTTC
CTCCAACTTTTCATTATTGTAGCTCCTTTCTTTCTTATGCTCTCTTGAGGTTCATTATCTGCTGCATTTAAGTGCATTCA
AGCTGTGCAAATTTGCTTGACATAGTTGGTGATGTATATCCGTTGCAGA---CATTATCGTATTTCTTGGGGCGTGAACT
TACTAACTAAATTTCCTTCATAATTAGTGCTTTGCATGGCAGGTTGCTGATCAGGTCTCAGCTATTTATGGTTTGCTCTC
ATATAGCTTATTTGTTTCAGTTAAATGTTTTCTTCTTTGCAGGTTATGTTTCTAACATCTATATTGCTTCCTCCTGTTTT
GTTTTTGACTTGCTTCTTTCCTTGACCCCTTTCTGTTTTGCAGGGTGATCCAGGTGCTAACTTTTTTGAAAATATTTTGG
TCTTTATGTAATGTTCCCTTTGTTAAGTTGATTTCGTTTGTTCTGAGTGTTCACTTGTCTTTTATGCTTGTGCAGGTGAA
TTGGTGTTCGTTCTTTCGCTCTTCTTGGTCCATGGGAGGCAGGAGCTATGGAAGATCATTGAAATCCTTTGCAGCAGTGG
AATAGCAATGTACCATCAAAGTCTTCGGCTGCAGAATGCTTTTCAGGTAACCGTCCGAGCGCTTGTCAGTTTATTTTGAA
GATAGACCGCAAAACTGTTTGCTGCTATACTTACA-TTAGTCTTTTCCAGTGCATTGTGCACAACAGAAATCATCAGC
>SNPs
-----------------------------------------------SS-------------------------------
-----------S-------------S--------------------S---------------------------------
-----------------------------------------SS--S--S-------------------------------
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-S----S----------------------------------------------------S--------------------
-----------------------------------S-----S---------------------S----------------
----------------------------------------------------S------SSSSSSSS----S---S----
--S----------------------------------------------S---------------------------S--
--S----------S-----------------------------S------------------------------------
---------------------S----------------------------------------------------------
------------------------------S-------------------------------------------------
S-------------------------------S-----------------------------------------------
----------------------------------------------------------------S---------------
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------------------S----------------------------------------------S--------------
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-S---------------------------------------------------------------SS-------------
-------------------------------------------------S------------------------------
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-------------------------------------------S------------------------------------
--------------------------------------------S-----------------------------------
----------------------S---------------------------------------------S-----------
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----------------------------------------------------------------------------S---
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---------S---------------------------------SS-----------------------------------
-------------------S----------------------------------------------------------S-
------S-------------------------------------------------------------------------
----S----------------------------S--------------------------------------------
>forward_563
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---------------------------------------------------------------GGGACTTTGTGGGTTCG
TTC-----------------------------------------------------------------------------
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>reverse_1749
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--------------------------------------------------------------------CGCTCTTGTTTG
CTCCAACT------------------------------------------------------------------------
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