>input_sequence_80384
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ATGAACTGCGCCAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCGCCGCGC---TCGGGCGCCCCTTCGCCGCCGC
TGCACGCAGAGGTAAGTCTTCACCGCCGACACCAAGGTTCCATACTTCTGTGTTTATTCCACACTGGGTAGCGAGAGGCA
TGTTCGGCCCTGACATTGTCACCGCCGCTCTCTCTTTCAAGAACCAACAATGGCGGCCACCGGCGACCAAGGAGATGGTG
CTCAGGCCAAGCTGGCCTGGATGGAAGTGGCGCCCGCAGAGGGTCTAAAGGAGAGGGTGATCACGAGGAAGGAGGAGAGT
ACAGACTCTAACCGTTTCAGGAGCACAAAGTTTTCTTTGGATGCCAAGAATCCGTTCGACGGCCGGGTGCCCTTCACCGC
CGATTACCACACCGTGCGCAGGCACCCGCCCTCGCACAACTAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr6D_1_TraesCS6D01G160700
TCGTAAATTTAACCAACGAGACCAACTACGACGGGAGCAAAAATTATACCACTATGATCAAACTTAGATCTGAAGAAATA
CGGGCACACTACATTATGAAATGAAGGAGTACTACGTGTTCATGCACTGTACTGCGATCCTTCAAGAGAATGCTAGTACT
CACCACTACGAC--TACGCATCAACGACTCAACGTCCGCCACACCACACACGC----AGGGATTAATCAACGGTTTTCCT
GTTACGTGTTTCTCGGGGCACCGGCCGTATTATA--CTCCCATCGCCATCGGAACCATGACCAAGCTCCAAGCCCCGGC-
-------ACGCACGCACGCATGCATGGGGCTCTGCGATCGGCAT----GCATGCCGTCGCCTTGGTTGCTGAATCCGGAG
GAGGA--------AAAGAAAACACCCTCCTCCCTCGGAGAGCGTCCGCGGTTCACGACATGTTCTTGGGACGCCGCAGCT
TGACAAATGACAACTTGACAAGGGACAGACTTTCGCCCGCGCCCTATAG-AAAACCCAAGTTCGTACCACCTGGAACCAC
TACCAG---TACTAGTAGAGTGAGTGGCAGCCTAGCGGAACAATCAACTTTGACCAATCGTGTGCACGCCGCAACTCCGA
TCTCGCCTTCCCCTATTCCTAGCTT-----GATTAGGCTAGCCATAATTGGGTAACATAAATAGTATCATGCACTTGGAA
CTTGCAAACATGCTTATGTGACAGGCAATTAAAGAAGAGAGAGATGGTTATAATAACATAGGTACATACTGTAACATAAT
AAATGTGATGCTACTATGTGTCATGCATGACAATAAATAAGACTATCTATGATATTAATATATGACACTATGGACTATAG
AGGACTAGTAACATATGCATATGCGTGTTACTAGTCTAAGTTACTCCACACTATGACCAGCCTTAGCTATAAATTAAACT
AGCCCCGTTGTTTCAGCCTTGCTTTCTCCGTTCCTCA---GACTCGTCAGATTTCAGAGTTCGGTAGTGCGGTTA---TT
ACCATGAACTGCGCCAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCGCCGCGC---TCGGGCGCCCCTTCGCCGCCGC
TGCACGCAGAGGTAAGTCTTCACCGCCGACACCAAGGTTCCATACTTCTGTGTTTATTCCACACTGGGTAGCGAGAGGCA
TGTTCGGCCCTGACATTGTCACCGCCGCTCTCTCTTTCAAGAACCAACAATGGCGGCCACCGGCGACCAAGGAGATGGTG
CTCAGGCCAAGCTGGCCTGGATGGAAGTGGCGCCCGCAGAGGGTCTAAAGGAGAGGGTGATCACGAGGAAGGAGGAGAGT
ACAGACTCTAACCGTTTCAGGAGCACAAAGTTTTCTTTGGATGCCAAGAATCCGTTCGACGGCCGGGTGCCCTTCACCGC
CGATTACCACACCGTGCGCAGGCACCCGCCCTCGCACAACTAGGCGGAGCTGACCTCAGTGTACGTACGTACTACTACTG
GCTAGCTAAGCTGGTTGGTTGCCTGGAAATACAG-----TTAGCTTATAGAGTAACAGTAACTACTAAGCTGTATAACAT
TTTCTCATCCTCTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTGCCACTAGTATGTTACTCGTCTCCCTTGTGGCC
TTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAACGATATCCTATACTACTATTACTGCAT
TTGCTATTTTTTCTT------------------------------ACAGT---GTACCGCATAAGCTGTTAATTAACTAT
ACGTACCTTTTTGTA-TGCATTACTGGTTGGTAAGGGTACGTTGTCCTCAC----AAGTAATGCGTTTGTTTGACGTTCC
AGCTGCAATGCAAACAAGGCATCTCCAGTGGCAAGCCACAAATTTTCTTCCGCATCCGTCCGTGGACGTGGACGGG-AGA
ATCAGTCCGCGGACACGAATGCGAGAGGCCGCTATCCAACCGTAACTGCATATATTTCAAACCGCATTTTAACCAAGCGG
ACGAAATTCATGCAAACCGACCGATATTCATCACAGTTCGGATAGAAAATAGCACAAATTATTCATACATACCATGCAAA
TTAAGTCTAGTACAACAATGTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TAATTTGACTAGAACCCAGATGTCCAAC-AAGTTTT-CATGAACGGATAATGTCATTCCACATATACT-CC-CCCCTCAG
CTTCATCTTATAATGTGTGCACGTAAATGGCCGTCCC-TCTGTCTTGTGGTACACCACGGCAGCGAGTGCGGGCTGCATA
TAATGTGTAG-ACCAACATTGAGTGAATGAATCA-TCAACAAGTTGAGTAAGATGAAGTAAAACTTACGATCTCGTCATC
TGCCGCGTGCAATGACCACCTTGCCTCGAGCTGACGAACCACGTCGCAAAACTTGGTGACGCTGATCTGGATAGCGTGCC
AGCGATACGACAACGACCTCACGTTGCATG
>chr6A_110
--------------------------------------------------------------------------------
-----------------------------TACTACGTGTTCATGCACTGTACTGCGATCCTTCAAGAGAATGC---TAGT
CACCGCTACTCCTGTACGCATCAACGACTCGACGTCCGCCACACCACACAC--AGAGAGTGATTAATCAACGGGTTTCCT
GTTACGTGTTCCTCGGGGCACCGGCCGTATTATATACT-CCATCGCCATGGGAACCATGACCAAGCTCCAAGC-------
----------CACGCACGCATGCATGGGGCTCTGCGATCGGCAT----GCATGCCGTCGCCTTGGTTGCTGAATCCGGAG
GAGAAAAAGAGAGAAAGAAAACACCCTCCTCCCTCGGAGAGCGTCTGCGGTTCACGACATGTCCTTGGGACGCCGCAGCT
TGACAAATGACAACTTGACAAGGGACAGACTTTCGCCCGCGCCCAATACAAAAACACAGGTCCGTACCACCTGGAACTAC
TACAAGTAATACTAGTAGAGTGAGTGGCAGCCTAGCGGAACAATCAACTTTGACCAATCGTGTGCACGCCGCAACTCCGA
TCTCGCCTTCCCCTATTCCTAGCTT-----GCTTAGCT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATAAAACT
AGCCCCGTCGTTTCAGCCTTGCTTTCTCCGTTCCTCA---GACTCGTCAGATTTCAGAGTTCGGTAGCGTGGTTG---TT
ACCATGAGCTGCGCGAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCCTTGCCGCCATCG---GCCCCTTCGCCGCCGC
TGCACGCAGAGGTAAGAAAATCTTTACGGCGACCAGAGCAAGG--TTCTGTGTCCATTC---------------------
TGTCCGGCCCTGACATTG---------CTCTCTCTTTCCAGAACCAGCAATGGCGGCCACCGGCGACGAAGCAGATGGCG
CTCAGGCCAAGCTGGCCAGGATGAAAATGGCTCTCGCAGACGGCCAGGAGGAGAGGGTGATCGTGAGGAAGCAGGAGAGT
ACAGACTCTGACAGTTTCACCACCACAAAGTTTTCTTCGAATGCCAAGAATCGGTTCGACGGCCGGGTGCCCTTCACCGC
CGATTACCACACCGTACGCAGGCACCCGCCCTCGCACAACTAGGCGGAGCTCAGCTCAGTGTACGTAC-TACTACTACTG
GCTAGCTAAGCTGGTTGGTTGCCTGGAAATACAGTTAAATTAGCTTATAGAGTAACAGTAACTACTAGGCTGTATAACAT
TTTCTCATCCTGTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTACCACTAGTATGCCACTCGTCTCCCTTGTGG-C
TTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAATGATATCCTATACTACTA---CTGCAT
TTGCTGTTTTTTCTTTTCTTACAGTGTACCATATAAGCTGTTCTTACAGT---GTACCGCATAAGCTGTTAATTAACTAT
ATGTACCTTTTTGTA-TGCATTACTAATTGGTAAGGGTACGTTGTCCTCACAAGAAAGTAATGCTTTTGTTTGCCGTTCC
AGCTGCAATGCAAACCCACGTTTAG----GGCAACCCGTAAATTTTCTCCCGCATCCGTCTGTGAA-A------GG-GGA
ATCAATCCACGGACACGGATGCGAGAGACCGTCATTCAACCGTAACCGCATACATTTCAAACCGCATTTTAACTAACCGG
AAAAAATTCAAACAAACCGGCCGATATTTATCAAAGTTCGGATAGAAAATAGTATAAATCATCCATACATACCATGGAAA
TTAAGTCTAGTACAATAGTGTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
TAATTCGACTAGATCCTGGATGTCCAAC-AAGTTTTTTATGAACGGATCATGTCGTTCCACACATACT-CC-CCTTTCAG
CTTCATCCAACAGTGTGTGCACGTAATGGCGTAAATGGTCTATCCTGTGATACACCATCGCATCACATGCAGGCTACATA
TAATGTGTAG-ACCAACCTTGAGTGAATGTATCAATCAACAAGTTGAGCAACATGAAGTAAAACTTACGATCTCG-----
--------------------------------------------------------------------------------
------------------------------
>chr6B_111
--------------------------------------------------------------------------------
------------------------------ACTACGTGTTGATGCACCGTACTGCGATCCTTCAACAGAGTGC---TAGT
CACCACTACTCCTGTACGCATCAACGACTCAACGTCCGCCACACCGCACACAGAGAGAGTGATTAATCAACGGTTTTCCT
GTTACGTGTTCCTCGGGGCATCGGCCGTATTATA--CT-CCATCGCCATCGGAACCATGACCAAGCTCCAAGCTCCGGCA
CGCACGCACGCACGCACGCATGCATGGGGCTCTGCGACCGGCCACCTCGCATGCCGTCGCCTTGATTGCTGAATCCGGAG
AAGAAAAAGAGAGAAAGAAAACACCCTCCTCCCTCGGAGAGCGTCCGCGGTTCACGACATGTTGTTGGGACGCCGCAGCT
TGACAAATGACAACTTGACAAGGGACAGACTTTCGCCCGCGCCCTATAG-AAAA-CCAAGTTCGTACCGCCTGGAACTAC
TACAAAGAACCAG----------------GCCTAGCAGTGCAATCAGCTTTGACCAATCGTGTGCACGCCGCAACTCCGA
TCTCGCCTTCCCCTAGCGAGGCTTAGCTTAGCTTAGCT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATAAAAAT
AGCCCCGTCATTTCATCCTTGCTTTCTCCATTTCAGCCTCGAGTCGTCAGATTTCAGAGTTCGGTAGTGCGGTTACTATT
ACCATGAACTGCGCGAGCCTGCTGCTCCTGCTCTGCGTCCTCCTCCTCGCCGCGC---TCG---GCCCCTTCGCCGCCGC
TGCACGCAGAGGTAAGTCTTCACCGCCGACACCAAGGTTCTATACTTCTGTGTTCATTCCACACTGGGTAGCGAGAGGCA
TGTTCGGCCCTGACATTGTCACCGCCGCTCTCTTTTTTCAGAACCAACAATGGCGGCCACCGGCGACCAAGGAGATAGTG
CTCAGGCCAAGCTGGCCTGGATGGGAATGGCCCCTGCAAAGGGTCTAAAGCAGAGGGTGATCATGAGGAAGCAGGAGAGT
ACAGACTCTAACCGTTTCAGGACCAGAAAGTTTTCCTCGACTGCCAAGAATCCATTCGACGGCCGGTTGCCCTTCACCGC
CGATTACCACAACGTGCGCAGGCACCCGCCCTCGCACAACTAGGCGGACCTCAGCTCAGT----GTACGTACTACTACTG
GCTAGCTAAGCTGGTTGGTTGCTTGGAAATACAG-----TTAGCTTATAGAGTAACAGTAACTACTAAGCTGTATAACAC
TTTCTCATCCTCTCTGTTCTCTCTATTCTTTGGCCCTTCTACGTAGTACCACTAGTATGTTA------------GTGGCC
TTGTCAGCTATGGATTTGCTGACGTTTTGTTAGTACTGGCCACGTCCTAGTAATGATATCCTATA-TACTA---CAGCAT
AAGCTGTTTTTTCTT------------------------------ACAGTGTAGTACTGCATAAGCTGTTAATTAACTG-
-TGTACCAATTTGTATTGCATTACTAATTGGTAAGGGTACGTTGTCCTCACAAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>chr6A_1840
TGCAACATAAGGT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CATCTTCAATGGCAACCCGTAAATTTCCTCCCGCATCCCCCGCGGGTAA------GG-GGG
ACCAGTCCGTGGACACGGATGTGGGAAGACGCCATCCAACCGCAGTGGCAAACATTTCAAACCGCATTTTAACTAACCGG
ACGAAATTCATGCAAAGCGACCGATATTCATCAAAGTTTGGATAGAAAATAGCACAAATCATCCATACATAACATGCAAA
TTAAGTCTAGTACAACAATGTCTTAATTCGACTAGATCCCGGATGTCCAACAAGTTTTTCATGAACGGATCATGTCGTTC
CACACATACTCCTCCTTCACCTTGATCCAACAGTATGTGCACGTAAATGGCCGTCCCTCTGTCCTGTGGTAGACCACGGC
GGCGTTTGCGGACTATATATAATGTGTAGATCAACATTGAGTGAATGAATCAATCAACAAGTTGAGCAAGAGGAAGTAAA
ACTTATGATCTCATCCTCTGCCGCGTGCAGTGGCCACCTTTCCTCGAGTTGACGAACCATGTTTCAAAATTTGATGACAC
TGATCTGGATAGCGTGCCAGCGATATGACAATGGCCTCATGTTACGTGATTGAATGATGTACATGTCGTGGGACGCAATG
TGCTTTCATGCATGAAACTTTTCATGCACTTGCTCTCAGAAGGGCTCCCCTCTACTCCTACCTATGAGATCCACGGATAC
AGCCAGCCACGTATCGTACAACTCATCCTTCATGGTTGAGTAGCTCACCATCCTTCGTACTATAAAAATGACATAACATT
TGAAAATAAGCTCAATGGCATTTGACCGAACACCTTCTGGGCGTGGTATCCGCCATTTTGTGATCTCTTGTTTACTTTAA
TGTGCTAACGAATGGGTTGGCCCAAATACTAAGAACCTTCAATGGCACTTTCCTACCGCCTCGCTTGAAGCGAAAAATGG
TCGTTGGGTTTCACCACCCGTGTTGGAAGTCTGGAACAGGCTAGGCCCATGCATCGTCTTTTCTTTTTTGCAACATAAGG
TCATCTTTAATGGCAACCCGTAAATTTCCTCCCGCATCCCCCGCGGGCAGTGGGGACCAATCCGCGGACACGGATGCGGG
AAGACGCCATCCAACCGTAGTGGCATACATTTCAAACCGCATTTTAACTAACCGGACGAAATTCATGCAAAGCGACCGAT
ATTCATCAAAGTTTGGATAGAAAA-TAGCACAAATCATCCATACATAACATGCAAATTAAGTCTAGTACAACAATGTCT-
TAATTCGACTAGATCCCGGATGTCCAAC-AAGTTTTTCATGAACGAATCATGTCGTTCCACACATATT-CCTCC-TTCAC
CTTCATCCAACGGTATGTGCACGTAAATGGACGTCCC-TCTGTCCTGTGGTAGACCACGTCGGCGTTTGCGGGCTACATA
TAATGTGTAG-ACCAACATTGAGTGAATGAATCAATCAACAAGTTGAGCAAGAGGAAGTAAAACTTATGATCTCGTCCTC
TGCTGCGTGCAGTGGCCACCTTTCCTCGAGTTGACGAACCATGTTGCAAAATTTGATGACACTAATCTGGATAGCATGCC
AGCGATATGACAATGGCCTCATGTTGC---
>chr3D_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGCATCTCCAACAGCAACCTGCAAAATTTCTCCCGCATTCGTCCGCAGACAG-----GGCGGG
GCCAATCCACGGACACGGATGCGGAAGGACGACATCCGACCGTAGCCGCATACATTTCAAACCGCATTTTAACTTAGCAG
ACGAAATTCATGCAAAACGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTGAT
GGTCATCAAAGTTCGGATAGATAA-AAGCACAAATCATTCATACATAGCATGCAAATTAAGTCTAGTACAACAATGTCTC
TAACTCAACTAGATCCCGGATGTCCAAC-AAGTTTTTCATGAACGGATCATGTCATTCCACACATACT-CC-CC-TTCAG
CTTCATCCAACAGTGTGTGCGTGTAAATGACCGTTCC-TTTGTCATGTGGTACACCACGGCAGCGCGTGCGGGCTACATA
TAATGTGTAG-ACCAATATTAAGTGAATGAATCAATCAACAAGTTGAGCAAGAGGAAGTAAAACATATAATCTCGTCATC
TGCCGCATGCAATGGCCACCTTGCCTCGAGCTGACGAAGCACGTTGAAAAACTTGATGACGCTGATTTGGATAGCATGCC
AGCGATACGACAACGACCTCACGTTGCGTG
>chr4D_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGCATCTTCAACCGCAACCCGCAAATTTTGTCCCGCATCCGTCCGCGGACAG-----GG-GGG
ACCAGTCCGCAGACACTAATGTCGGAGGACGACATCCAGCACTAGCCCCATATATTTCAAACCGCATTTTAACTAACCGG
ACGAAATTCACGCAAACCGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCGAT
ATTCATCAAATTTCTGATAGAAAA-TAGCACAAATCATCCATACATATCATGCAAATTAAGTCTAGTACAACAATGTCTC
TAATTCGACAAGACCTTGAATGTCCAACAAAGTTTTTCATGAACGGATCATGGCGTTCCACGCATACT-CC-CCCTTCAG
CTTCATCCAACAGTGTGTGAACGTAAATGGCCGTCCC-TCTATCC-ATGGTACACCACGGCGGCACATGCGAGCTACATA
TAATGTGTAG-ACCAACATTGAGTGAACGAATCAATCAACAAGTTGAGCAAGAGGAAGTAAAACTTACGATCTCGTCCTC
TGCTGCGTGCAATGTCCACCTTGCCTCGAGCTGACGAACCACGTTGCGTAACTTGGTGATGCTGACCTGGATAGGGTGTC
AGCGATACGACAACGATCTCACGTTGC---
>chr5A_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGCATCTTCAGCGGCAACACGCAAATTTCCTCCCGCATCGGCCCGCGGACA------GG-GAG
GCCAGTCCACGGACACGAATGTGGTAGGCAGCCATCTAACCATAGTCATATACATTTCAAACCGCATTTTAACTAATCGG
ATGAAATTCATGCAAACCGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCAAG
ATTCATCAAAGTTCAGATAGAAAAATAGCACAAATCATCCATACATACCATGCAAATTAAGTCTAGTACAACAATATCTC
TAATTCGACTAGATCCTGGATATCCAAT-AAG-TTTTTATGAACGGATCATGTCGTCCCACACATACT-CC-GCCTTCAG
CTTCATCTAACAATGTGTGCACGTAAATGGCCGTCCC-TCTATCCTGTGGTACACCACGGCAGCGCGTGCGGGCTACAAA
TAACATGTAG-ATCAACATTGAGTGAATGAGTCAATCAACAAGTTGAGCAAGAGGAAGAAAAACGTGCGATCTCGTCCTC
TGCCGCGTGCAATGGCCACCTTGCCTCGAGCTGACAAACCACATCGCAAGACTTGGTGATGCTGATCTGGATAACGTGCC
AACGAAACGATAAGT-CCTCACGTTGCATG
>chr5D_1849
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GGTATCTCCAACGGCAACCCGCAAATTTCCTCCGGCATCTGTTCGCGGACAG-----GT-GGG
ACCAGTTCGTGGACACGGATGCGGGAGGCCGCCATCCACCCGTAGCCACATACA-TTCAAACCACATTTTAACTAACAAG
ACGAAATTCATACAAACCGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CCGAT
ATTCATCAAAGTTCGGATAA-AAAATAGCAAAAAACATCCATGCATAGCATGCAAATTAAGTCTAGTACAACAATGTCTC
TAATTCGACTAGATCCCGGTTGTCCAAC-AAGTTTTTCATGAACGGATCATGTCATTCCACACATACT-CC-CCCTTCAG
CTTCATCCAACAGTGTGTGCACGTAAATGGACGTCCC-TCAATTATGTGGTACACCACGGTAGAGCGTGTGGGCTACATA
TAATGTGTGG-ACCAACATTGGGTGAATGAATCACTCAACAAGTTGAGCAAGAGGAAGTAAACCTTACGATCTCGTCCTC
TGCCACGTGCAATGGCCACCTTGCCTCGAGCTGTCAAACCACGTCACAAAACTTGATGACGTTGATCTAGATAGCGTGTC
AGCGGTACGACAACGACCTCATGTTG----
>chr1D_1850
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCATCTCCAACAGCGACCCACAAA-TTCCTCCCGCATCCGTCGGCGGATA------GG-GGG
ACCAGTCCGCGGACACGGATGCAGGAGGCCGTCATCCAACCGTAGCCGCATACATTTCAAACTGTATTTTAACTAACTAG
ATGAAATTCATGCAAACCGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCGAT
ATTTATCAAAGTTCGGATAG-GAAATAGCACAAATCATTCATACATACCATGCAAATTAAGTTTAGTACAACAATGTCTC
TAATTCGATTAGATCCCGGATGTCCAAC-AAGTTTTTTATGAACGGATCATGTCGTTCCACACATACT-CC-CC-TTCAA
CTTCATCCAACAGTGTGTGCACATAAATGGACGTCCC-TCTCTCATATGGTACACCACGGCAGCGCGTGCGGGCTACATA
GATTGTGTAC-ACCAACATTGAGTGAC----TCAATCAACAAGTTGAGCAAGAGGAAGTAAAACTTATGACCTCGTCCTC
GGCCACGTGCAATAGCCACCTTGTCTCGAGCTGACGAACCACGTCGCAAAACTCAGTGACACTGATCTGGATAGCGTGCC
AGCGATACGACAACGACCACACGTTG----
>chr5B_1911
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ATCAGTCCGAGAACACAGATACGGGAGACAACCATCCAACACTAGCAGTATACATTTCAAACCGTATTTTAACTAATCGG
ACGAAATTCATTCAAACCGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCGAT
ATTCATCAAAGTTCTGATAG-AAAATAGCACAAATCATTCACACATGGCATGCAAATTAAGTCTAGTACAACAAGGTCTT
AAATTAGACTAGATCCCAGATGTCCAAC-AAGTTTTTCAGGAACGGATAATGTCCTCCCACACATACTTTC-CC-TTCAG
CTTCATCCAACAGTGTATGCACGTAAATGGCCGTCCC-GCTGGCCTGTCGTACACCACGACGGCGCGTGCGGGCTACATA
TAATGTGTAGAACCAACATTGAGTGAATGAATCGACCAACAAGTTGAGCAAGAGGAAGTAAAACTTACGATCTCATCCTC
TGCCGCGTGCAATGGCTACCTTGCCTCGAGCTGACGAGCCATGTTGCAAAATTTGATGACACTGATCTGGATAGCGTGCC
AGCGATACGTCAACGACCTCATGTTG----
>chr6A_1913
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CAGTCTGCGGACACGGTCATGGGAGACCACCACCCAACCGTAAACGCATACATTTCAAACCACATTTTAACTAACCGG
GTGAAATTCATGCAAATCGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCGAT
ATTCATCAAAGTCCGAATAG-AAAATAGCACAAATCATCCATACATACCATGTAAATTAAGTCTAGTACAACAATGTCTC
TAATTCGACTAGATTTCGGATATCCAAC-AAGTTT--CATCAACGGGTCATGTCATTTCACACATACTCCC-CC-TTCAG
CTTCATCCAACAGTATGTGCACGTAAATGGTCGTCCC-TCTGTCCTGTGGTACACCACGGCAACACGTGTGGGCTACATA
TAATGTATAG-ACCAACATTGAGTGAATGAAACAATCAACGAGTTGAGCAAGAGGAAGTAAAACTTACGATCTCGCCCTC
AACCGCATGCAATGGCCACCTTGCCTCGAGCTGACGAACCACGTCGCAAAACTTGGTGACGCTGATCTAGATAGCGTGTC
AGCGATACGACAACGACCTCACGTTGCATG
>SNPs
-SSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------SSS--S-
---------SS----------------------------------------SS------S--------------------
----------S---------------------------S----------------------------------S------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---S----------------------------------------------------------------------------
-------------------------------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----
--------S-----------------------------------------------------------------------
--------------S----------------------------------------------SSS----------------
----------------------------------------S-------------S-------------------------
--------------------------------------S-----------------------------------------
--------------------------S----S-------------------------------S-------S--------
----------------------S--------------S-S----------------------------------------
---------------------------------------------------S-S--------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-----------------------------------------------------S-----------------SSS------
-----S--------------------------------------------------------------------------
-S-----------------------SS-------------------------------------S--------S------
---------------SS-----------------S-------------S------------------SSSSSSS---S--
--------------------------------S-------------S--------------------------S------
---------------------------------S-------------------------S--S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----S-------S------------------------------------------------S------------S----
--------S-S---------------------------------S--------------------S---------S----
------------------------------------------------S-------------------------------
--------------S-----------------------------------------------------------------
------------------------------
>forward_34
--------------AACGAGACCAACTACGACGG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>reverse_1988
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GTGGACGGGAGAA
TCAGTCC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
