>input_sequence_80382
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----------------------------------------ATGCATACCTCGGCGTTAGCAATGGTCACATTCTTCCCTA
TCCTCGCATTCTTGTCAATGATGCAGTTTCTGGGCAGAACAAGAGGAAGACATTTGTCAGACAAGAGTAATACAACGCGA
TGTCTAAATTGATGAGCGGTGAGCTAGGAAGTAAATATGCATGCGTACTGAATCGAAGTATTCTCCCCGATCCCAATCGG
AACCTTTCCTTCGGCCAGCTGGTCGCATCTTTCCATGTCAGTTTCATAGAAATCAGCACCGAGCATTACCGTATCCTGAA
GAAATGGAGAACCACATTTGCTGTT---GTGGAAGGCTATAATGGATCCCTATTTTTGTTTATGATTTTTGCAAGCAAGA
GGCCTAACCTTGAGGTGTACGTTGGAGCCTATCCGAGAACGGATTCCAACGACACTGTGCTCTACCCTGCATTTATCTAA
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>chr5D_1_TraesCS5D01G484600
CTTGATGCTGCTTAGCCAGAACTGAAATCCAGGAGCGTCAGTGTTTGTTGCCCATGCCCAGCATCACAGGTCCCGGAATG
GCGTGGCAGTGCCCAAGTATGAAAACCCATGATGCTACTTTGGATAAATGCAATGCCTGCCTAGTGATAGCACAATTCTT
TTCAAGTGAACTGGTTGGCTTTCATCTTCGAACTTCCTCCCTCCA-----------------------------------
-----------GGATGTGCACACTCCCCAACAAGC---AAAAAAAAACTAAAAGCTGAAATGAATTTTCCAAAATTTCAG
CCCTTTCAGTGGGTGCTGATTTTTTTTAGGGTAGGGTACCGAAATATTTGTAACCTC-AAAATTTCAAGCTAGGTTCAAA
ATAATTTCAAAAGGAATTTAAATTTAATAAAAA------------------ATCAATAGAATTAGGTGAATTTTGATATA
TCGAAAACCAAAATAATTTGTGAAATTCTTCAAATTTGTTAAATTTCACATATTTCGATGAGGTACTGAAGTTTTCTGTT
TTCAAAATTTAAAACCTCGGTTATATTGACAACGCTATTTGAATATTTAAAGCAATTTGGTGATACGACATTGCATGTTT
-GAGAACCAAAGTCATCTCCTATACACAAGGAGCATTTTCAGGGTTGCCACGCATCTTATTGGAAGAGTACAAACGAATT
CTTTATTTCTCTTGCTGGACTGGAGAACCGCC--TTTTCAGCTCATATGACTAATCCATCCGCAATCACCGAGTTCTTCA
GCACAACCGTGATGCCGGACCGGATGTGGAAGCCTTCTGACGCCCTATCTGATTCCTGTACACCCTGCAAAGAACCCAAC
AGCAAACCACATGTTCAGTAATATTCGGAC-GACACCAACTCCGAAGGGCGGTTCACTGGAAATGAAT--------AATA
GCATTTCCAACGAACGCTACACAAATCTTATCAAATTAGAGCAAGATTGGGGGATCATAGCTTGTTGATTCATATTCATT
ATGCGACTGTTCTTGAAGAAACAAGGTGGCAGAGAACATCATGCATACCTCGGCGTTAGCAATGGTCACATTCTTCCCTA
TCCTCGCATTCTTGTCAATGATGCAGTTTCTGGGCAGAACAAGAGGAAGACATTTGTCAGACAAGAGTAATACAACGCGA
TGTCTAAATTGATGAGCGGTGAGCTAGGAAGTAAATATGCATGCGTACTGAATCGAAGTATTCTCCCCGATCCCAATCGG
AACCTTTCCTTCGGCCAGCTGGTCGCATCTTTCCATGTCAGTTTCATAGAAATCAGCACCGAGCATTACCGTATCCTGAA
GAAATGGAGAACCACATTTGCTGTT---GTGGAAGGCTATAATGGATCCCTATTTTTGTTTATGATTTTTGCAAGCAAGA
GGCCTAACCTTGAGGTGTACGTTGGAGCCTATCCGAGAACGGATTCCAACGACACTGTGCTCTACCCTGCATTTATCTAA
GAAACATCCATGGGAAATGATCGAATCAGTGATCTGCAAATGGTATACACACATGTTAGGCGGCACGGCAACCAAATCGA
TT------------TATGAAGAGTAACTGAACACTTATAGTAAGATATTACTCCCTCCGTCCCAAAATTCTTGTCTTAGA
TTTGTCTAGATACGGATGTATCAAGTCATGTTTTAGATACATCCGGATTTAGACAAATCTAAGACAAGAATTTTGGGACG
GAGGGAGTAGTAACTAAGGGTGCAAAGGCAAAGCACGGTGATAATGATGGCACAATCTAATAGAAAGAATTTTGGGCTGT
AAAAATGGTACACACAGAATTTTCAAGAAAAGAATAGTGCAAAATGGGAGTCATACTAGCCCAGAGGCAACACATACCTT
ACTAGTGCTGATCATAGATGGTGGTAGGTTTCTGCGTGATGTGTACATCGGTTTGCTAGCATCATAGAAACTGAACTTTG
AAGGCTGCATAC-------AAAAAGATGATGACATGTTACCAAAGGTTCAGGTTCCCACTTTATTTCTTGCAAAATAAAA
GTTTA-TTGCTTGTTCATACGTATTATGACC-----ATTAGTACATTGTATTTATCTCTTTTGTAGAGTGCTCTCTATGA
TTCTTGCACCTTGTAAAGTGTCAGTGT------------------------------------ATATATCTACTGCCTCA
CTGGGCCATACCAATAAACAGTGATACTGCATAAGAGTAACTATTAACACCTTACATTGAATAAGACTAACACCAGAACC
AATAACATAGTGGTGTAGGAAAAGAAGGGCAAAGACTGTAAGAGGATAACGAAATAAAGAGGCAGCTCGCCATTAGTTTT
CACAGACTACCCATACCTGTTCAGCAAGGGCAAGATTTGCTTCGAAGAAGGATTTGATAGTTCCAATATCTTCCCAGTAA
TCATTGAAAAGATATGCCTAAAGTTTTAAATATTAGATACCAGCGACATCATGTGGAAGTCAGCGTA-AAAAAACATCAT
ATGAAAGTTCAGGTTTACGGAA
>chr5B_7
GCTGCT-----TTAGCCAGAACTGAAATCCAGAAGCGTGAGTGTTTGCTGCCCATGCCCAGCATCACAGGTC--------
-----GCAGTGCCCAAGTATGAAA-CCCATGATGCTACTTTGGATAAATGCAATGCCTGCCTAGTGACAGCACAACTCTT
TTCAAGTGAACTGATTGGCTTTCCTCTTCGAACTTCCTCCCTCCACCCCACCAGCACCACAGGAGGATGCCACGGCCAAA
GGCTTTACGGTGGATGTGCACAC--------AAGCGAAAAAAAAAAACTAAAAGCTGAAATGAAATTTCTGAAATTTCGG
CACTTTCAGTGGATACCGGTTTTTTTTAGGGTAGGGTACTGAAATATTCGTAACCTC-CAAATTTCAAGCTAGGTTCAAA
CT-----------------AATTTCAAAACAAATTTAAATTTAGTAAAAAGATCAATAGAATTAGGTGAATTTTGATAGA
TCGAATTCCAAAAGAAAATATCCG-------AAATTTGTCAAATTTCACATACTTCGGTGACATACGGAAGTTTTCTGTT
TTCAAAATTTAAAACCTCGGTCATCTTGACAATGCTATTTGAAATTTTAAAGCAATTCGGTGACACGACATTGCATGTTT
-GAGAACCAAAGCCATCTCGTATACACAAGGAGCATTTTCAGGGTTGCCACGCATCTTATTGGAAGAGTACAAACGAATT
CTTTATTTCTCTTGCTGGACTGGAGAACCGCCTTTTTTCAGCTCATATGACTAATCCATCCGCGATCACCGAGTTCTTCA
GCACAACCGTGATGCCGGACCGGATGTGGAAGCCTTCTGACGCCCTGTCTGCTTCCTGCACACCCTGTAGAGAACCCAAC
AGCAAACCACATGTTCAGTAATATTCGGACAGACACCAACTCCGAAGGGCGGTTCACTGGAAATGAAT--------AGTA
GCATTTCAGGCGAACGCTAGAAAAATCTTATCAGATGAGAGCAACATTGGGGGATCATAGCTTGTTGATTCATATTCATT
ATGCGACTGTTCTTGAAGAAACAAGGTGGCAGAGAACATCATGCATACCTCAGCGTTAGCAATGGTCACATTCTTCCCTA
TCCTCGCATTCTTGTCAATGATGCAGTTTCTGGGCAGAACAAGAGGGAGACATTTGTCAGACAAGAGTAATACAACGCGA
TGTCTAAATTGGCGAGCGGTGTGCTAGGAAGTGTATATGCGTGCGTACTGAATTGAAGTGTTCTCCCCGATCCCAATCGG
AACCTTTCCTTCGGCCAGCTGGTCGCCTCTTTCCATGTCAGTTTCATAGAAATCAGCACCGAGCATTACCGTATCCTGAA
GAAATGGAGAACCACATTTGCTGTTATTGTGGAAGGCTATAATGGATCCCTATTGGTGTTTATGCTTTTTGCAAGCAAGA
GGCCTGACCTTGAGGTGTACGTTGGAGCCTATTCGAGAACGGATTCCAACGACACTGTGCTCTACCCTGCATTTATCCAA
GAAACATCCATGGGAAATGATTGAATCAGTGATCTGCAAATGGTAT--ACACATGTTAGGTGGCACGGCAACCAAATCGA
TTCTGTAGAGTAACTCTGAAGAGTAACTGAACACTTATAGTAAGATATTA------------------------------
--------------------------------------------------------------------------------
---------GTAACTAAGGGTGCAAAGGCAAAGCACCGCGATAATGATGACACAATGTAAC-GAAAGAACTTTGGGTAGT
GAAAATGGTACACACAGAATTTTCAATAAAATAATACTGCAAAATGGGAGTCATACTAGCCCAGAGGCAACACATACCTT
ACTACCGCTGATCATAGATGGTGGTAGGTTTCTCCGTGATGTGTACATCGGTTTGCTAGCATCATAGAAGCTGAACTTTG
AAGGCTGCATAGTTGAATG-AAAAGACGATCACATGTTACAAAAGGTTCAGGTTTTTACTTTATTTCTTGCAAAATAAAA
GTTTA-TTGCTTG---ATACGTATTATGTTATCACTATTAGTACATTGCATTTATCTCTTTTGTAGAGTGCTCTATGAAG
TTCTTGCACCTTGTAAAGTGTCAGTGT------------------------------------ATATATCTACTGCCTCA
CTGGGCCATATCAATAAAGAGTGATATTGCATACGAGTAACTATTAACACCATACATTGAATAAAACTAACACCAGAACC
AATAACATAGTGGTGTAGGAAAAGAAGGGCAAAGACTGTAAAAG----ACAAAATAAAGAGGCAGCTTGCCATTAGTTTG
CACATACTACCCATACCTGTTCAGCAAGGGCAAGATTTGCTTCGAAGAAGGATTTAATAGTTCCAATATCTTCCCAGTAA
TCATTGAAAAGATATGCCTGAAGTGTTAAATATAAGATACCGGTAACATCATATGGAAGT--------------------
----------------------
>chr5A_7
------GCTGCTTAGCCAGAACTGAAATCCAGTAGCGTGAGTGTTTGCTGCCCATGCCCAGCATCACAGGTGCCAGAATG
GCGTGGCAGTGCGCAAGTATGAAAACCCATGATGCTACTTTGGATAAATGCAATGCCTGCTTAGTGATAGCACAACTCTT
TTCAAGTGAACCGATTGGCTTTCCTCTTCGAACTTCCTCCCTCCACCCCACCAGCACCACAGGAGGATGCCACGGCCAAA
GGCTTTGCGGTGGATGTGCACAC--------AAGC---AAAAAAAGACTAAAAGC-----TGAAATTTCTGAAATTTCGG
CACTTTCAGTGGGTACCGATTTTTTTTAGGGTAGGGTACCAAACTATTTGTAACCTCAAAAATTCCAAGCTAGGTTCAAA
CA-----------------AAATTTAATAAAAA------------------GTCAATAGAATTAGGTGAATTTTGATAGA
TCTAAATCCAAAAGAAAATATCTG-------AAATTTGTTAAATTTCACATATTTCAGTGACATACGGAAGTTTTCTGTT
TTCAAAATTTAAAACCTCAGTCATGTTGATAACACTACTTGAATTTTTAAAGCAATTCGGTGACATGACATTGCATGTTT
CGAGAACCAAAGTCATCTCGTATACACAAGGAGCATTTTCAGGGTTCCCACGCATCTTATTGGAAGACTACAAACGAATT
CTTTATTTCTCTTGCTGAACTGGAGAGACTC--TTTTTCAGCTCATATGACTAATCCATCCTCAATCACTGAGTTCTTCA
GCACAACCGTGATGCCGGACCGGATGTGGAAGCCTTCTGACGCCCTGTCTCCTTCCTGTACACCCTGCAAAGAACCCAAC
AGCAAACCACATGTTCAGTAGTATTCGGAC-GACACCAACTCCGGAGGGTGGTTCACTAGAAATGATCAAATGAACAGTA
GCATTTCAGACGAACGCTACAAAAATCTTATCAAATGAGAGCAACATTGGGGGATCATAGCTTATTGATACATATTCATT
ATGCGACTGTTCTTGAAGAAACAAGGTGGCAGAGAACATCATGCATACCTCGGCATTAGCAATGGTCACATTCTTCCCTA
TCCTCGCATTCTTATCAATGATGCAGTTTCTGGGCAGAGCAAGAGGGAGACATTTGTCAGACAAGAGTAATACAACACGA
TTTCTAAGCTGGCGAGCGGTGAGCTAGGAAGTATATATGCGTGCGTACTGAATCGAAGTGTTCTCCCCGATCCCAATCGG
AACCTTTCCTTCGGCCAGCTGGTCGCCTCTTTCCATGTCAGTTTCATAGAAATCAGCACCGAGCATTACCGTATCCTGAA
GAAATGGAGAACCACATTTGCTGTTATTGTGGAAGGCTATAATGGATCCCTATTGGTGTTTATGCTTTTTGCAAGCAAGA
GGCCTGACCTTGAGGTGTACGTTGGAGCCTATTCGAGAACGGATTCCAACGACACTGTGCTCTACCCTGCATTTATCCAA
GAAACATCCATGGGAAATGATCGAATCAGTGATCTGCAAATGGTAT--ACACATGTTAGGCGGCACGGCAACCAAATCGA
TT------------TCTGAAGAGTAACTGAACACTTATAGTAAGATATTG------------------------------
--------------------------------------------------------------------------------
---------GTAACTAAGGGTGCAAAGGTAAAGCACGGTGATAATGATGGCACAATGTAATAGAAAGAATTTTGGGCTGT
AAAAATGGCACATGCAGAA-TTTCAAGAAAAGAATAGTGCAAAATGGGAGTCATACTAGCCCAGAGGCAACACATACCTT
ACTAGTGCTGATCATAGATGGTGGTAGGTTTCTGCGTGATGTGTACATCGGTTTGCTAGCATCATAGAAGCTGAACTTTG
AAGGCTGCATATTTTCACGAAAAAGATGATCACATGTTACGAAAGGTTCAGATTCCCACTTTATTTCTTGCAGAATAAAA
GTTTTTTTGCTTGTTCATACGTATTATGACC-----ATTAGTACATTGTATTTATCTCTTTTGTAGAGTGCTCTCTGTAA
TTCTTGCACCTTGTAAAGTGTCAGTCAGTGTATATATCTACTGCCTCATTCGCAAAAAAATAAATATATCTACTGCCTCA
CTGGGCCATACCAATAAACAGTGATACTGCATAAGAGTAACTATTAACACCTTACACTGAATAAAACTAACACCAGAACC
AATAACATAGTGGTGTAGGAAAAGAAGGGCAAAGACTGTAAAAGGATAACGAAATAAAGAGGCAGCTCGCCATTAGTTTG
CACAGACTACCCATACCTGTTCAGCAAGGGCAAGATTTGCTTCAAAGAAGGATTTGATAGTTCCAATATCTTCCCAGTAA
TCATTGAAAAGATATGCCTGAAGTGTTAAATATTAGATACCGGCGACATCATATGGAAGTCGGCGTAGAAAAAACATCAT
ATGGAAGTTAAGGTTTACAGAA
>SNPs
SS--S---------------------------S-----S--------S--------------------------S-----
---------------------------------------------------------------------------S----
-------------S---------S--------------------------------------------------------
-----------------------SSSSSSSS---------------------------------S----SS-------S-
-S------------S-S---------------------------------------------------------------
S-SSSSSSSSSSSSSSSSS-----------------------------------------------------------S-
------S------S--SS-S-SSSSSSSSSS--------------------------S---SS---S-------------
---------------------S--S-------------------S------------S-----S----------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S----S----------------------------
-----------------------------------------------------------------------------S--
-------SS------------S--------------S-------S-----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S---------------------------------
-----------SS--------------------S------S------------------S--------------------
--------------------------S-----------------------------------------------------
------------------------------------------------------SS--------S---------------
-----S--------------------------S--------------------------------------------S--
----------------------------------------------SS--------------------------------
---------------S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------------------------------------------S-----------------------
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---------------------------------------------------------------------S----------
-----------S------------------S---------S---------------------------------------
----------------------------------------------------------------------------S-S-
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----------------------------------------------------------------S---------------
-----------------------------------------S-------------------------------------S
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-------------------S----S----------------S----------S--------S------------------
---S-----S--------S---
>forward_265
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-----CCTCCAGGATGTGCACACTC-------------------------------------------------------
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>reverse_1752
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-----------------------------------------------------------------------TTTGGGACG
GAGGGAGTAGT---------------------------------------------------------------------
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