>input_sequence_80374
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-----------------------------------------------------------------------ATGGACCAG
CCGAAGAAGCAGCAGCTTACCGCCGCTCCGTCGCCGGCGGCGGCAGCACCGAAGAAGTCCACGTCGACGCTCCTTGACGC
GTTCGAGGTGGACTGCATCAGGCGGGAGCTGGAGAGTCTCCTCCTCAAGCAGAACGCCGGGGAGGGCACGGCATCCAGCA
GCAGCGACGCCGCGGCGGAAATACTCGGCCTCAGCCGCCGCCGCCGCCACAGCAGCAAGAAGACGATCAGTGCCAAGAAC
GCTATACCCGCGCCACCG---------------CCGCCGCCGCGGCCACCACCGGCTGCCAAGAAGCTCTCGGGCGGCCG
GACGCGGCTACATCTGGGGAAGCACGCAGTGAAGCTATGCAGCGGCGCCCTCGCCGTTTCCTCCGCCGTTGAAAACGGCC
GGAGGCCGCGGCGCGCGGGCTATCGGGAGGTCGAGAAGGTGTAG------------------------------------
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>chr7D_1_TraesCS7D01G204800
GCGTCGCCCCATCGGGCCGTAGCGAGCGTGGCACGCGGTCCCTGCTGCCGTCCTGAGGTCTTCCCCACCGTCGCCCCGAC
CCGCGCTGTGCCGTTGCGTCGCCCCTTGA--GG-C-GTAGCACCGCGGCACGCGATCCACTTCGCCGTCCACGCGCGTTG
ACTCCTGTGTGGTATGCGCCGCCCCGTCTTCCTACGAGCGGGAACGCCACCGTCCGCGCCGATCTTCGTCATGCTGTCGG
GTTCTTCCTCGCCTACTTCGAGCACCGTCGGGCTCCAAGCCGTT--GCCGC---CGCCTCCTCCTCAGGCCGC---CGCC
GCTCTTCTTTCCGGTCCACGGCGACTACCTCGACACTGGCTAACCCGACACGACATCGACCACAGCATTCTTCGCACGGC
TACCTCGACCATGGCTACACCACCCTACGCTCTCGGCCACTTCGACAT-CGGCACAAAGGGCTATCATTC-GCTTGAGC-
AACTCGTCGGCTTCTTCTACAGTCAACGCGTCCGCGACGCGACACCGTCCACGA-GCTTCGGGTATGACTGCGGGGGGAT
GTCAGCCTGTCGGCTGCTATTCTCTTCAGTCTGACCGTCCGCGACGCTCCCGTTGTCTGCGACGCTACCGCTACGACTGC
-GGGGGATGTTAGAGATATATTTGGGTTACTTGTATTTGGTAGTCTAGGATTTGTAATCCGTCTCCTACCTTATCTCTAG
GAGAGGCTTCTTGCCCTTCAAGTCTTGTACTCAATATATACTCGCCCTCGAGGCTCAATAATACATTCATCATATTCCGC
AACAATTTCATCAATTCTTCTCTCTCCCTTCTAACAGAGTCAAGTACGCGAAAGTAGATGAAAGGTGAACATACTTGTGG
GTCCACCTTGCCAGAAAACGTCACCTGCTTCCTTTCTTATAGCGGAG----CGAGCAGGCATAGGTACCCACGGGTCTCC
CATCCCTGCGCGAACCAAACTCATCCACGTGAGGCTCTCAATTGCCGGT----------GCGTACGCCGTCATGGACCAG
CCGAAGAAGCAGCAGCTTACCGCCGCTCCGTCGCCGGCGGCGGCAGCACCGAAGAAGTCCACGTCGACGCTCCTTGACGC
GTTCGAGGTGGACTGCATCAGGCGGGAGCTGGAGAGTCTCCTCCTCAAGCAGAACGCCGGGGAGGGCACGGCATCCAGCA
GCAGCGACGCCGCGGCGGAAATACTCGGCCTCAGCCGCCGCCGCCGCCACAGCAGCAAGAAGACGATCAGTGCCAAGAAC
GCTATACCCGCGCCACCG---------------CCGCCGCCGCGGCCACCACCGGCTGCCAAGAAGCTCTCGGGCGGCCG
GACGCGGCTACATCTGGGGAAGCACGCAGTGAAGCTATGCAGCGGCGCCCTCGCCGTTTCCTCCGCCGTTGAAAACGGCC
GGAGGCCGCGGCGCGCGGGCTATCGGGAGGTCGAGAAGGTGTAGCAACCGTGCATGCATGCATGTATGGATCAACGTCTA
CTTTTCCTTGTGCGCGGTTTGTGGAATTCAAATACGAGAGCAGTTGCAGGATTCACCGTGTAATTTGAAGACTTATCTCT
TCTGGTATCTTTTTCTTTTACGTAATCGTGTCTCCATGATGGTATAATGTGAGTGATCGGTCGATTACGAACAGTGTAAA
TAAATTTCAGATAATTTTTGTCCAATGGTTTGGTGCGGATTTACATGTTCTGTGCTTGCTTTTGCTTT-GAAGATTGGGT
GTGCGATGCGATGCAGCTGCTCTTTTGGAGTTTTTGACC----CCGTCTGGTTGATCCGCTTTTCTCGTAGTACGCGCAA
CGCAAGCGGGTGCAGCTCCCGAAGAGAATCATCTTGGATAGTTGGATTGCTGCGTGCTTTCTTCGCTCGGTGTGCCACCA
TTCCAC-TTTCAAACGGCGACTCTTTTTTTTGAGTACCACTAGAGTCACAATAAAAAAAAAGAGTCATCGCGG--TAGCA
AAAGGCATTTAAGTTCTCTAGTCTTT----TTAGTAGTCTAATTTTGTGCTTGTGACTCTTATTTTTGCTTGTTTTCTAA
CCCCAAATATTTTTCAGTGTGCTGAATTTTAAAAAAAA----TTGCGACGAGAAATTCTTTTTAATTAATAATATTTATT
GGCAC--AAAAAAAACTTG-AATTTTAGTAA-----------G-----------ATTGAGCTCCGTCGTGGAGTCGAGTT
CCTCCGCACGGCAAGTCGGCACCGAGAGTTCTCTTTTGCTGGAAGTCTGAGATCGATCATCCCGTGTTCGGTACGTGTGC
GTGGATGAGAGCAGCCGGTGCTCTCCTCGATCGACGCTATCACGATGCGACGGAGATGGGAGACGGGCTTGCGAAGCATT
TCCCTACGAAGGTGGCATTGAATGAGCCCTCCCGTATGATCGCCGCTCAGGTGTCCGTATCGCGGGTTTGAATTTGGGAG
CCATGCACGGATCGGCCGGTCGATCTGGCTTAGCCTTAGCCACGG
>chr2D_1
GCGTCGCCCCGTCGGGCCGTAACGAGCGTGGCACGTGGTCCCTGCAACCGCCCTAAGGTCTTCCCCGCCGTCGCCCCGAC
TCGCGCGCTGTCACTGCGTCGCCCCTTCA--GG-CCATAGCGCCGCGGCACGCGGTCCACTTCGCCGTCCCCGCGCGTCG
ACTTCTACGTGGTATGCGTCGCGCCGCCTTTGTAGGCGCGGGAACGTCACCGTCTGCGCCGGTCTTCGTCACGCTGTCGG
GCTCTTCCTCGCCTACTTCGAGCACTGTCGCCGTGCTTCTGACCTAGCCGC---CGCCTCCTCCTCAGGCCGCCGCCGCC
GCTCTTCTTCACGGTCCACGGCGACTACCTCGACACCGGCCACCCCGACTCGACATCGACCACAGCGTCCCTCGCACGGC
TACCTCAACAACGGCTACACCACCCTAAGCTCTCGGCTACATCGACAT-CGGCACAAAGGGCTACCGCCTTGCTTGAGCA
ACCTCGTCGGTTTCCACTCCAACCACGACTTCCGCGATGCGTCGACCGT-------------------------------
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>chr1A_1
GCGTCGCCCCGTCGGGCCGTAGCGAGCGTGGCACGCGGTCCCTGCAACCGCCCTGAGGTCTTCTCCGCCATCGCCCCGAC
CCACGCGCTGCCGCTGCGTCACCCCTTTTTGGG-CCATTGCATCGCGGCGCGCGGTCCACTCCGCCGTCCCCGCGCGCCG
ACCTCTACGTGGTATGCGTCGCGTCGCCTCCCTAGGCGCGGGAGCGCCACCGTCCGCGCCGGTCCTCGTCAAGCTGTCGG
GTTCTTCCTCGCCTACTTCGTGCACCGTCGTCGTGCTTCTAACCTAGCCGCCATCGCCGCCTCCTCAGGCCGC---CGCC
GCTCTTCTTCCCGGTCCACGGCGACTACCTCGACACCAGCCACCCCGACTCGACATCGACCACGGTGTCCCTCGCACGGC
TACCTCAACAACGGCTACACCACCCTACGCTATCGGCTACATCGATAT-CGGCACATAGGGCTACCACCTTGTTTGAGCA
AACTCGTCGGTTTCCACTCCAGCCACGACTTCCGCGA-------------------------------------------
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>chr6A_1
GCGTCGCCCCATCAGGCCGTAGCGAGCGTGGCACGCGGTCCCTGCAACCTCCTTAAGGTCTTCCCCGCCGTCGCCTCGAA
CCGCGTGCCACCGCTGCATTGCCCCTTCGA--G-CCGTAGCATCACGGCGCATGGTCCACTTTGCTGTCCCCGCATGTCG
ACCTCTAGGTGGTATGCGTCGCACCACCTCCCTAGGCGCGGGAACACCATCGTCCGCGCCGGTCTTCATCACACTGTCGG
GTTCTTCCTCGCCTACTTCGAGCACTGTCGCCGCGCTTCTGACCTAGCCAC---CGCCGCCTCCTCAGGCCGC---CGCC
GCTCTTCTTCCCGGTCCACGGCGACTACCTCGACACTGGCCACCCCGACTCGATATCGACCATGGCGTCCCTTGCATGGC
TACCTCAACAACGGCTACACCACCCTACGCTCTGGGCTACATCGACAT-CGGCACAAAGGGCTACCGCCTTGCTTGAGCA
AACTCGTCGGTTTCCACTCCAGCCACGACTTCCGCAATGCGTCAACCGT-------------------------------
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>chr1A_8
-------CCCATCGGGCCGTAGCGAGCGTGGCACGCGGTCCGTGCCGCCGCCCTGAGGTCTTGCCCGCCGTCGCCCCGAC
CGGCGCGTTGCTGCTACGTCGCCCCTTCG--GGTC-GTAGCGCCGTGGCATGCGGTCCGCTTCGCCGTCCACGCGCGTCG
ACTTATGTGTTGTATGCGCCGCGCCGCCTTCCTAGGCATGGGAACGCCACCGTCTGCGCCGGTCTTCGGCACGCTGTCGG
ATTCTTCCTTGCCTACTTCGAGCACCGCCGCCGCGTTCTTGACCTAGCAGC---CGCCACCTCCTCAGGCTGC---CGCT
GCCCTTCTTCTCAATCCATGGCAACTACCTCGACACCGGCCACCCCGACTCGACATCGACCACGGCGTCCCTTGCACGAC
TACCTCGACCACGGCTACACCACTTG-CGCTCTCGGCTACTTTGAAAAACGGCACAAAGGGCTACCGCCTTGCTTGAGCA
ACCTCGTCGGTTTCCACTTCAGTCATGACTTCCGCGATGCGTCAACCGT-------------------------------
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>chr7D_320
CGGC----------------------------------------------------------------------------
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--------------TCCATGGCGACTCCCTCGACACCGGCTACCCCGACTCGACATCGACCACGGCGTTCTTCGCACGGC
TACCTTGACCACGGCTACACCACCCTACGCTCTCGGTTACATCGACAT-CGGCACAAAGGGCTATCATCC-GCTTGAGC-
AACTCGTCGGCTTCCTCTACAGTCAACGCATCCGCGACGCGACACCGTCCACGACGCTCCCGCTAGGACTGCGGGGGGAT
GTCAGTCCGTCGGCTGCTATTCTCTCCAGTCTGACCGTCCGCGACGCTGCTGTTGTTCGCAACGCTACCGCTATGACTGC
GGGGGGATGTTAGAGATATATTTGGGATACTTGTATTTGGTAGTCTAGGATTTGTAATCCGTCTCCTACCTTATCTCCAG
GAGAGGCGTCTTGCCCTCCAAGTCTTGTACTCAATATATACTCGCCCTCGAGGCTCAATAATACATCCATCATATTCCGC
AACAATTCCATCAATCCTT-TCTCTCCCTTCTAACA--------------------------------------------
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>chr6B_320
CGGC----------------------------------------------------------------------------
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--------------TCCACGGCGACTTCCTCGACACCGGCAACCCCGACTCGACATCGACCACGGCATTCTTCGCACGGC
TACCTCGATCACGGCTCCACCACCATATGCTCTCGGCTACATCGACAT-CGGCACAAAGGGTTATCATCC-GCTTGAGC-
AACTCGTCGGATTCCTCTACAGTCAACGCGCCCGCGACGCGACACCGTCCACGACGCTCCCGCTAGGACTGTGGGGGGAT
GTCAGCCTGTCGGCTGCTATTCTCTCCAGTCTGACCGTCCGCGACGCTCCTGTTGTCTGCGACGCTACCGCTACGACTGC
GAGGGGATGTTAGAGATATATTTGGGATACATGTATTTGGTAGTCTAGGATTTGTAATCCGTCTCCTACCTTATCTCTAA
GAGAGGCGTCTTGCCCTCCAAGTCTTATACTCAATATATACTCGCCCTCGAGGCTCAATAATACATCCATTATATTCAAC
AACAATTCCACCAAACCTC-TCTCTCCCTTCTAACA--------------------------------------------
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>chr7B_820
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------------------------------------GAGTCAAGTACGCGAAAGTAGATGAAAGGTGAACAAACTTGTGG
GTCCACCTTGTCAGAAAACGTCACCTGCTTCCCTTCTTATAGGAGAACGTACGAGCAGGCATCGGTACCCACGGGTCTCC
CATCCCTGCGCGAACCAAACTCATACACGTGAGGCTCTCAATTGCCGCGGGCTCCCGGCGCGTACGCCGTCATGGACCAG
CCGAAGAAGCAGCAGCCTACCGCCGCTCCGTCGCGGGCGGCGGCAGCACCGAAGAAGTCGACGTCGACGCTGCTTGACGC
GTTCGAGGTGGACTGCATCAGGCGGGAGCTGGAGAGTCTCCTCCTCAAGCAGAACGCCGGCGAGGGCACCGCATCCAGCA
GCAGCGACGCCGCGGCCGAAATACTCGGCCTCAGCCGCCGCCGCCGCCACAGCAGCAAGAAGACGATCAGTTCCAAGAAC
GCTAGACCCGTGCCGCCGCCGCCGCCGCCACCACC------------ACCACCACCGGCCAAGAAGCTCTCGGGCGGCCG
GACGCGACTACATCTGGGGAAGCACGCAATGAAGCTATGCAGCGGCGCCCTGGCCGTTTCCTCCGCCGCTGAAAACAGCC
GGAGGCCGCGGCGCGCGGGCTACCGGGAGGTGGAGAAGGTGTAGCAACCGTGCATGCATGTAT----GGATCAACGTCTA
CTTTTCCTTGTGCGCGGTTTGTGGAATTCAAATACGAAAGCTGTTGCAGGATTCACCGTGTAATTTGAGCATCTATTATA
T--------TTTATCCTTTACGTAATCGTGTCTCCATGATGGCATAATGTGAGTGATCGGTCGATTGCGAACAGTGCAAA
TAAATTTCAGATAAATTTTGTTCAATGGTTTGGCGAGGATTTACATATTCTGTGTTTGCTTTTGCTTTTGAAGATTGGAT
GTGCGATGCGAGGCAGCTGCTCTTTTGGAGTTTTTGATC----CCCTCTTGTTGATCGGCTTTTCTCGTAGTACGCGCAA
CGCAAGCGGGTGCAGCTCCCGAAGAGAATCATCTTGGATAGTTGGATTGCTGCGTGCTTTCTTCGTTCTGTGTGCCATCA
TTCCAATTTTCAAACGGCGGCGTTGTAAAAAATATTT------------------------------TTCGCGGTTAGCA
AAAGACATTTAAGTTTTCTAGACTTT----TTAGTATTTTAATTATGTGCTTGTGACTCCTTTTTTGCTAG---TTTTAA
ACCCAATTATTTTCCAGTAGGCAGAATTTTTTTATATTTTTTTTGCGGGAAGAAATTCCATTTTATTAGA---ATTTATT
GGCAC--AAAAAAACTTGAAAATTTCAGCGGCAATATTTACTG-----------ATTCAGCTCCATCGTGCAGTCGAGTT
CCTCCGCACGGCAAGTCGGCACCGAGAGTTCTCTTTTGCTGGAAGTCTGAGAC----CATCCCGTGTTCGGTACGTGTGC
GTGGATGAGAGCAGCCGGAGCTCTTGTCGATCGACGCTATCACGATGCGACGGAGATGGGAAACGGGCTCCCGAAGCATT
TCCCTACGAAGGTGGCATTGAATGAGCTCTCCCGTATGATCGCCGCTCAGGTGTCCGTATCGCGAGTTTGAATTTGGGAG
CCATGCACGGTTCGGCCGGTCGATCTGTCCCAGCCTTCACCACGG
>chr7A_820
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------------------------------------GAGTCAAGTACGCGAAAGTAGATGAAAGGTGAACAAACTTGTGG
GTCCACCTTGTCAGAAAACGTCACCTGCTTCCCTTCTTATAGCAGAATGTGCAGGCA------------------TCTCC
CACCCCTGCGCGAACCAAACTCATACACGTGAGGCACTCAGTTGCCGCGGGCTCCCGGCGCGTACGCCGTCATGGACCAG
CCGAAGAAGCAGCAGCCCAGCGCCGCCCCGTCGCGGGCGGCGCCAGCACCGAAGAAGTCGACGTCGACGCTCCTTGACGC
GTTCGAGGTGGACTGCATCAGGCGGGAGCTGGAGAGTCTCCTCCTCAAGCAGAACGCCGGCGAGGGCTCGGCATCCAGCA
GCAGCGACGCCGCGGCGGAAATACTCGGCCTCAGTCGTCCCCGTCGCCACAGCAACAAGAAGACGATCAGTGCCAAGAAC
GCTATACCCGCGCCGCCG---------------CC------------ACCACCACCTGCCAAGAAGCTCTCGGGCGGCGG
GGCGCGGCTACGTCTGGGGAAGCACGCAGTGAAGCTATGCAGCGGCGCCCTGGCCGTTTCCCCCGCCGTTGAAAACGGCC
GGAGGCCGCGGCGCGCGGGCTACCGGGAGGTGGAGAAGGTGTAGCAACCGTGCATGCATGTAT----GGATCGACGTCTA
CTTTCCCTTGTGCGCGGTTTGTGGAATTCAAATACGAAAGCAGCTTCAAGATTCACCGTGTAATTTGAGTATCGTAT---
-----TATCTTTGTCCTTTACGTAATCGCGTCTCCATGATGGCATAATGTGAGTGATCGGTCGATTACGAACAGTGCAAA
TAAATTTCAGATAAATTTTGTTCAATGGTTTGGTGTGGATTTACATGTTCTGTGCTTGCTTTTGCTTTTGAAGATTGGGT
GTGCGATGCGAGGCAGCTGCTCTTTTGCAGTTTTTGACCCCGGCCGTCTGGTTGATCAGCTTTTCTCGTAGTACGCGCAA
CGCAAGCGGGTGCAGCTCCCGAAGAGAATCATCTTGGATAGTCGGATTGCTGCGTGCTTTCTTCGTTCTGTGTGCCATCA
TTCCAATTTTCAAACGGCGGCGTTCTAAAACATATAT------------------------------TCGCGG--TAGCA
AAAGCCATTTAAGTTCTCTAGTCTTTAATTTTAGTATTTTAATTCTGTGCTTCTGATCTTTTTCTTGCTTG---TTTCAA
ACCCAATTATTTTCCAGTGCGCAGATTTT---AAAAAA----ATGCGGTGAGAAATTCTTTTTAATTAAA---ATTTATT
GGCAGAAAAGAAGACTTGAAAATTTTAGTGGCAACTTTGCGCTCTCTTTGTAACATTTAGCTCCGTCGTGCAGTCGAGTT
CCTCCGCACGGCAAGTCGGCACCGAGAGTTCTCTTTTGCTGGAAGTCTGAGATCGATCATCACGTGTTCGGTACGTGTGC
GTGGATGAGAGCAGCCGGAGCTCTTGTCGATCGACGCTATCACGATGCGACGGAGATGGGAGACGGGCTCCCGAAGCATT
TCCCTACGAAGGTGGCATTGAATGAGCCCTCCCGTATGGTCGCCGCTCAGGTGTCCGTATCGCGGGTTTGAATTCGGGAG
CCATGCACGGATCGGCCGGTTGCTCTGGCTCAGCCTTCGCCACGG
>SNPs
---------------------------------------------S----S---------------S-------------
------SS-----S-------------S--------------------------S-----------------------S-
---S------------------S---S-------S-S------------------------S---------S--------
------------------------------SSS-S-SSSSSSSS------------------------------------
---------S--------------------------------S------S------------------------------
-----------S-------------------------S------------------------------S-----------
--------------S-------------------------------------------S-S-S--S--------------
-------------------------S------------------------S-----------------------------
--------------------------S-----------------------------------------------------
-------S---------S------------------------------------------------S-------------
-------S-------S---S---------------------------------------------------S--------
----------S---------------------S----------S--S---------------S-----------------
------------------------S----------------------SS-------------------------------
----------------S-----------------S------------------------S--------------------
------------------------------------------------------------S-------------------
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--------------S--------------------SSSSSSSSSSSS------SS-------------------------
---------------------------------------------------S----------------------------
----------------------S--------S----------------------------S--SSSS-------------
-------------------------------------S------------------------------SS-SS---SSSS
-SSSS-------S--S--------------------------S---------------------------------S---
--------------S------S-------------S--------------------------------------------
-----------S---------------------------------------------S----------------------
-----------------------------------------------------------------S--S--------S--
-----S-------------S-SS-S-SSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
----S-------------------------------S-S-----S----------------S----SSS-SSSS--S---
S-----S------S-----S--S-------SS---------------SS--------------------SSSS-------
--------------SS-SS----------SS--------------------------S------------S---------
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------------------S-----SS-------------------------------------------SS---------
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------------------------------S------S-------
>forward_891
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-----------------------------------------------------------------------TACTTGTGG
GTCCACCTTGC---------------------------------------------------------------------
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>reverse_2190
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-----------------------------AAGATTGAGCTCCGTCGTGG-------------------------------
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